These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1159 fasta sequence [TTGCATCATGCGTCCTCACTTGGCCTGCCTCCCTCCACGCTCCTCCGTCTCCTACCCCTTTCTCGCCTTCCCCAACTTTATCCTCGCTCACTTTCCATCTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATCGTGTTGCGCTGATAATTGTGTGCTGGGCACTGTCAATTTGACCGAGACAT] [+] EMBL AK061189 [TTGCATCATGCGTCCTCACTTGGCCTGCCTCCCTCCACGCTCCTCCGTCTCCTACCCCTTTCTCGCCTTCCCCAACTTTATCCTCGCTCACTTTCCATCTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATCG ] [+] EMBL AK099311 [ CTCGCCTTCCCCAACTTTATCCTCGCTCACTTTCCATCTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCGTGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATCG ] [+] EMBL AK104115 [ CTCGCTCACTTTCCATCTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCCGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATC ] [+] EMBL AK058690 [ CTCACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCCATCGTGTTGCGCTGATAATTGTGTGCTGGGCACTGTCAATTTGACCGAGACAT] [+] EMBL CF324824 [ ACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTT ] [+] EMBL CF326306 [ ACACGACGGCCACACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCC ] [+] EMBL AU076274 [ ACTGACGAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAG GGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGAC ] [+] EMBL BF430661 [ TACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCGAGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGGTCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAGCCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTGGCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTGGTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGGATCATCGGCCTTGCACTCCTTACCATTCAGTCTA ] [+] EMBL AU076275 [ GCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGNCAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAGTCTATCCTGCCGACATTGTTCGNGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAG CTTCGGGCTACAGCTCGGGCTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAGAGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTTGTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGGATTGTGTATTGACGACAACGAATTCaaaaa ] consensusID : consensus_12103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 107 fasta sequence [CGAGCTACGCCANTGTCCTGCGCCCGCACGTCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCNGTGCCACCTACGCCGCCCGGGCAGCATGCG] [+] EMBL D43535 [CGAGCTACGCCANTGTCCTGCGCCCGCACGTCTCGTCGACGAGGACTCCGCGCGGGCCTCGTCGTCCCGCGGGCGCNGTGCCACCTACGCCGCCCGGGCAGCATGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12103#0 TTGCATCATGCGTCCTCACTTGGCCTGCCTCCCTCCACGCTCCTCCGTCTCCTACCCCTT 60 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 TCTCGCCTTCCCCAACTTTATCCTCGCTCACTTTCCATCTCACACGACGGCCACACTGAC 120 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 GAGTAGTAGACGGTGAACAGCCTACAGGGAGGAGGCATGGGGGTAGCCGTGACAATGGCG 180 consensus_12103#1 ----------------------------------------------------------CG 2 ** consensus_12103#0 AGCTACGCCGCCGTCCTGCGCCCGCACGCCTCGTCGACGAGGACTCCGCGCGGGCCTCGT 240 consensus_12103#1 AGCTACGCCANTGTCCTGCGCCCGCACGTCTCGTCGACGAGGACTCCGCGCGGGCCTCGT 62 ********* **************** ******************************* consensus_12103#0 CGTCCCGCGGGCGCGGTGCCACCTACGCCGCGCCGGGCAGCGCTGCGAGCTACTACGCGG 300 consensus_12103#1 CGTCCCGCGGGCGCNGTGCCACCTACGCCGC-CCGGGCAGCA-TGCG------------- 107 ************** **************** ********* **** consensus_12103#0 TCTCCTCCGGCTGTCGCTGCCACTCCACCTCCGCGGGAGCGGGTGCAGCAGCAGCAGCAG 360 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 CCGGGTGACGGCCAGACGACGACGCGGCTCTACTCGCTGGCGCCGTGCCCGCTCCTGCTG 420 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 GCGGCGCTGCTGCCGGGGGCCGAGCCGGTGCGCGCCGTGTTCGAGCCGTTCGTCGAGCTG 480 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 GTCAAGACGTGGGGCCTCCCCGGCTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCC 540 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 GTGGTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCG 600 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 GATGACCCTGAAGAGAAGGCCAAGGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATG 660 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 TTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTCTTCTCACGTCAGACAAA 720 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 CCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATT 780 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 CAGTCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTC 840 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 CTCGGCAGCGGCATCATGACCCTGTTTCTAATCCACGCAGCCTTCGGGCTACAGCTCGGG 900 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 CTCAGCTTCTAATCCTCAGCCACAACATCTGGGGTTTGCTTCTCTGTGATTAGCTCTCAG 960 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 AGGCATCCCTGTTACACACATCGAAGAGAAATGAAACACAGAGAGAGTTTTCTCTCTCTT 1020 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 GTTTTCCCTTTGTTTCTTTTCACCCTGCGAATGTTGACAATAATGTAGACCTGGTGTTGG 1080 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 ATTGTGTATTGACGACAACGAATTCCATCGTGTTGCGCTGATAATTGTGTGCTGGGCACT 1140 consensus_12103#1 ------------------------------------------------------------ consensus_12103#0 GTCAATTTGACCGAGACAT 1159 consensus_12103#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||