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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1047 fasta sequence
[GCGAAAAAATTCGCACGAACCCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGCCGCCACTTCTCTCCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCCTTGACATACCAGAAAGTTCCTAGGCCTGTTCTTGCGGAGGCCATCAACATTGAGGGTCTTGCATTGGACAAGTTCCTGGAGCACCATATTGCAAACTCCGGTTGGGTGATCGAGAAGGGTGCACGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAACTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTGGGCGCATCTGTTTTCTCTGCTGTGATGTACTGCGTTTTGATATGCCTGTTTTAGCTAAACAAGTCAATTCTAGTGACGATCCGAGCGTCATATCTGCCTAGTTATGTTTATGTAAGCATTCTGCCATGATATTACATTGTTGGCAAGATATTTTATC]
[+] EMBL C26795 [GCGAAAAAATTCGCACGAACCCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGCCGCCACTTCTCTNCTCTCCTCCTNTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGNATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGTTGGNGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGNGAACCCCTACAANCCCGNCATTCTCAACGACCTCGAGGNNTTCGTNAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGT ]
[+] EMBL AK073293 [ CCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGCCGCCACTTCTCTCCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCCTTGACATACCAGAAAGTTCCTAGGCCTGTTCTTGCGGAGGCCATCAACATTGAGGGTCTTGCATTGGACAAGTTCCTGGAGCACCATATTGCAAACTCCGGTTGGGTGATCGAGAAGGGTGCACGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAATTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTGGGCGCATCTGTTTTCTCTGCTGTGATGTACTGCGTTTTGATATGCCTGTTTTAGCTAAACAAGTCAATTCTAGTGACGATCCGAGCGTCATATCTGCCTAGTTATGTTTATGTAAGCATTCTGCCATGATATTACATTGTTGGCAAGATATTTTATC]
[+] EMBL AK120235 [ CCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGCCGCCACTTCTCTCCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCGCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCCTTGACATACCAGAAAGTTCCTAGGCCTGTTCTTGCGGAGGCCATCAACATTGAGGGTCTTGCATTGGACAAGTTCCTGGAGCACCACATTGCAAACTCCGGTTGGGTGATCGAGAAGGGTGCACGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAACTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTGGGCGCATCTGTTTTCTCTGCTGTGATGTACTGCGTTTTGATATGCCTGTTTTAGCTAAACAAGTC ]
[+] EMBL CF339338 [ CCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATTCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAAGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCC ]
[+] EMBL CF328195 [ CCTCTCCTCCTCTCGCCGCTCCC GGGTTTCGCGCGATATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCT ]
[+] EMBL CF317758 [ TCGCCGCTCCC GGGTTTCGCGCGAGATCTACTCTATCATGCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGACCAGGCGGCGGAGAGCTGCACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCCTCAACGATCATGTTTCCAACCAAACATAT ]
[+] EMBL CA999965 [ CAGGGTTTCGCGCGAGATCTACTCTAGCATTCGCGTGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTAAGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGCATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGGAGACTGCTAGGTTCCGTCAATTTTGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATCCTATGCGATACATGTGCTCTCCTTGACATACCAGAAAGTTCCTAGGCCTGTTCTTGCGGAGGCCATCAACATTGAGGGTCTTGCATTGGACAAGTTCCTGGAGCACCATATTCCAAACTCCGGTTGGGTGATCGAGAAGGGTGCACGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAACTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTGGGCGCATCTGTTTTC ]
[+] EMBL CA757418 [ GGGTTTCGCGCGAGATCTACTCTAGCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGGTGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCTTCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTCGTCTGTACCAGTTCGAACCAGAAAGGTTGAGT ]
[-] EMBL CF337210 [ AAGGGTGCACGATCTCAGCTGATTGTCCTCCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAACTGAGATTTTGCAT ]
consensusID : consensus_12129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence
[AGTTCTCTCTCACTACCTGGGAGACTGCTAGGTTCCGTCAATTTTGGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATTCCTATGCGATACATGTGCYCTYCTTGACATACAGAAAGTTCTAAGGCTGTTCTTGCCGAAGGCCAWWYCACCATGAAGGGTCYTGCMATTGRMCARGTTCCTKGRRSMMCMAWTATGGCAAMMCYCCGGTTKGGTTAG]
[+] EMBL AA752650 [AGTTCTCTCTCACTACCTGGGAGACTGCTAGGTTCCGTCAATTTTGGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGTTCCAGGTTTTGAGCAGGCAATCCAATTCCTATGCGATACATGTGCYCTYCTTGACATACAGAAAGTTCTAAGGCTGTTCTTGCCGAAGGCCAWWYCACCATGAAGGGTCYTGCMATTGRMCARGTTCCTKGRRSMMCMAWTATGGCAAMMCYCCGGTTKGGTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12129#0 GCGAAAAAATTCGCACGAACCCGAAAACCCTTTTCTCCATCGCCTCCCCCTCCGCCGCGC 60
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 CGCCACTTCTCTCCTCTCCTCCTCTCGCCGCTCCCAGGGTTTCGCGCGAGATCTACTCTA 120
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 GCATTCGGGCGTTAGGGTTCCCCGAGATGGCGAGCGAGCAGGCGGCGGAGAGCTACACGG 180
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 TGGAGGAGCTCGTCGCCGTGAACCCCTACAACCCCGACATCCTCAACGACCTCGAGGGCT 240
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 TCGTCAACGATCAGGTTTCCAACCAAACATATAACTTGGATGCAAATCTTAGTCTTCTTC 300
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 GTCTGTACCAGTTCGAACCAGAAAGGTTGAGTGTGCAGATTGTATCTCGCATATTGATTA 360
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 AGGCTCTCATGGCAATGCCAGGCCCGGACTTCAGCCTATGCTTATTCTTAATTCCAGAGC 420
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 ATGTGCAAATGGAGGAACAGTTCAAGACGTTGATAGTTCTCTCTCACTACCTGG-AGACT 479
consensus_12129#1 ----------------------------------AGTTCTCTCTCACTACCTGGGAGACT 26
******************** *****
consensus_12129#0 GCTAGGTTCCGTCAATTTTGGG-ATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGT 538
consensus_12129#1 GCTAGGTTCCGTCAATTTTGGGGATGAGGCGTCGAAGAACCGCAACATATTGGATGTTGT 86
********************** *************************************
consensus_12129#0 TCCAGGTTTTGAGCAGGCAATCCAAT-CCTATGCGATACATGTGCTCTCCTTGACATACC 597
consensus_12129#1 TCCAGGTTTTGAGCAGGCAATCCAATTCCTATGCGATACATGTGCYCTYCTTGACATAC- 145
************************** ****************** ** **********
consensus_12129#0 AGAAAGTTCCTAGGCCTGTTCTTGC-GGAGGCCAT--CAACATTGAGGGTCTTGCA-TTG 653
consensus_12129#1 AGAAAGTTCTAAGGC-TGTTCTTGCCGAAGGCCAWWYCACCATGAAGGGTCYTGCMATTG 204
********* **** ********* * ****** ** *** ****** *** ***
consensus_12129#0 GACAAGTTCCTGGAGCACCA--TATTGCAAAC-TCCGGTTGGGTGATCGAGAAGGGTGCA 710
consensus_12129#1 RMCARGTTCCTKGRRSMMCMAWTATGGCAAMMCYCCGGTTKGGTTAG------------- 251
** ****** * * *** **** ****** *** *
consensus_12129#0 CGATCTCAGCTGATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAAC 770
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 ACAGCTGAAACTGTTCCGTTCGAGCATGTAACTCGCATATTCCCTGTCCTTAGCTGAGTC 830
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 AACAACCAGACCAACTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAAGATACTCTG 890
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 GGCGCATCTGTTTTCTCTGCTGTGATGTACTGCGTTTTGATATGCCTGTTTTAGCTAAAC 950
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 AAGTCAATTCTAGTGACGATCCGAGCGTCATATCTGCCTAGTTATGTTTATGTAAGCATT 1010
consensus_12129#1 ------------------------------------------------------------
consensus_12129#0 CTGCCATGATATTACATTGTTGGCAAGATATTTTATC 1047
consensus_12129#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||