These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2891 fasta sequence [CACTCCTCCCCTCTTCCACCCTCCCCCCACCTCGTCGCCTCGCCGTCTCCACCCCCAAAACCCTAGCCGCCGCCGCGCTCCTCCTCCTCCGCCGCCGCCCGGCGCCGCCCGCGGCCATGGATCTCCTCCGCTCGCACCTCCACAAGGTCCGCATCCCGGAGCCCGGCAGCCGCATCCACAAGGACGAGTGCTGCGTCTCCTTCGACACCCCGAGGTCGGAGGGTGGGCTGTACGTCGACATGACCTCGTTCCTGGGGTTCGGGAGGGAGCACGTGGCGTGGAACTACGAGAAGAGTGGGAACCCCGTGTACCTCCACATCGTGCAGCGCCGGAAGCCGGAGCCCGACGACGAGGCGGATCGCCCGCTGAAGAAGCCCACGCTACTCGCCATCGGAGTGGAGGGAGGTTTCACTGATCAAGAACCCGAATACGATGAGGCTTTTGAAATTGTTATCTTGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGACAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT-GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG-----CAGACGTTTTCTCATACCCAGAAGATGATAGCGT-TGAAGATCCACTATTAGCGCAG-CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCCCTGGTTATACTGGCCTTGTAAATCTTGGAAATAGTTGCTATATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAATGACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAACACCGGAAACCATGAGCTGAATCCTTTTACAGGGTTCAAATTCTTCATTGAGGAGCGTCTTCAATGCCCTTCTGGAAAAGTCTCCTATAACAAACGTTCTGACTACATTCTTTCTTTGAACATACCGTTACATGAAGCTACTAACAAAGAGCAGCTAGAAGCATTTCATGAGAAGAAAGCTGCAATGGATTTGGATGGAAAGGAAGTGTCTAATGAGGAAATTGTGAGGCCTAGAGTCCCACTGGAGGCATGCTTAGCAAGTTTTTCAGGCGCGGAGGAAGTGCCTGAATTTTACAGCACTGCATTGAATTCAAAGACAACAGCAATTAAGACTGCTGGCTTTAAAACATTTCCTGATTACCTGGTGTTGCAGATGCGCAAGTTTGTAATGGAAGCAGGATGGGTGCCAAAGAAACTAGATGTATACGTAGATGTGCCAGATATAATTGATATCTCGCACATGCGCAGCGAAGGCATACAGCCTGGTGAAGAGCTACTACCTGAAGGAGCTTCTGGTGATAACAAAGCTGAACCTGTTCATCCTGTTGCCAGTGAGGACATTGTATCTCAGCTGGCAAGCATGGGGTTCAATTATCTTCATTGCCAGAAAGCTGCTATTAGTACATCAAACACAGGAGTTGAGGAGGCGATGAGTTGGCTTCTCTCACACATGGATGATCCAGATATCAACGATCCAATATCTAAAGATTCACAGGCTGCTGAACAAACTGTTGATGAAACTAGCGTTCAAACTCTTGTTTCCTTCGGATTTCAAGAAGATGTTGCTCGAAAGGCCTTGGCAGCTTCTGGTGGAAATATCGAGAGAGCAACAGACTGGATTTTTAGCCACCCTGAGGCTTTTAGCTCAGTACCTACTGATTCTTCAACAAG-CAATATGG-AAGATGATGATGCACACATACCAGATGGAAGTGGCAGATA-CAAATTGATGGCGTTTGTGAGCCATATGGGCACCTCTACCCATTGTGGGCACTACGTTGCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATACCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGC--GGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCTTCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCATGAAAACTTTGGACTGGCTCAACTTTTTACATATGAAATGGAAAACAAAAGGCAAGGGACGGTCCCTGATGCCGCATAAAAAATTTGCACATTGTAGCAGAGCGCTGGGTGTTAAAAGATTGGT] [+] EMBL AK103230 [CACTCCTCCCCTCTTCCACCCTCCCCCCACCTCGTCGCCTCGCCGTCTCCACCCCCAAAACCCTAGCCGCCGCCGCGCTCCTCCTCCTCCGCCGCCGCCCGGCGCCGCCCGCGGCCATGGATCTCCTCCGCTCGCACCTCCACAAGGTCCGCATCCCGGAGCCCGGCAGCCGCATCCACAAGGACGAGTGCTGCGTCTCCTTCGACACCCCGAGGTCGGAGGGTGGGCTGTACGTCGACATGACCTCGTTCCTGGGGTTCGGGAGGGAGCACGTGGCGTGGAACTACGAGAAGAGTGGGAACCCCGTGTACCTCCACATCGTGCAGCGCCGGAAGCCGGAGCCCGACGACGAGGCGGATCGCCCGCTGAAGAAGCCCACGCTACTCGCCATCGGAGTGGAGGGAGGTTTCACTGATCAAGAACCCGAATACGATGAGGCTTTTGAAATTGTTATCTTGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGACAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAGATCCACTATTAGCGCAG CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCCCTGGTTATACTGGCCTTGTAAATCTTGGAAATAGTTGCTATATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAATGACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAACACCGGAAACCATGAGCTGAATCCTTTTACAGGGTTCAAATTCTTCATTGAGGAGCGTCTTCAATGCCCTTCTGGAAAAGTCTCCTATAACAAACGTTCTGACTACATTCTTTCTTTGAACATACCGTTACATGAAGCTACTAACAAAGAGCAGCTAGAAGCATTTCATGAGAAGAAAGCTGCAATGGATTTGGATGGAAAGGAAGTGTCTAATGAGGAAATTGTGAGGCCTAGAGTCCCACTGGAGGCATGCTTAGCAAGTTTTTCAGGCGCGGAGGAAGTGCCTGAATTTTACAGCACTGCATTGAATTCAAAGACAACAGCAATTAAGACTGCTGGCTTTAAAACATTTCCTGATTACCTGGTGTTGCAGATGCGCAAGTTTGTAATGGAAGCAGGATGGGTGCCAAAGAAACTAGATGTATACGTAGATGTGCCAGATATAATTGATATCTCGCACATGCGCAGCGAAGGCATACAGCCTGGTGAAGAGCTACTACCTGAAGGAGCTTCTGGTGATAACAAAGCTGAACCTGTTCATCCTGTTGCCAGTGAGGACATTGTATCTCAGCTGGCAAGCATGGGGTTCAATTATCTTCATTGCCAGAAAGCTGCTATTAGTACATCAAACACAGGAGTTGAGGAGGCGATGAGTTGGCTTCTCTCACACATGGATGATCCAGATATCAACGATCCAATATCTAAAGATTCACAGGCTGCTGAACAAACTGTTGATGAAACTAGCGTTCAAACTCTTGTTTCCTTCGGATTTCAAGAAGATGTTGCTCGAAAGGCCTTGGCAGCTTCTGGTGGAAATATCGAGAGAGCAACAGACTGGATTTTTAGCCACCCTGAGGCTTTTAGCTCAGTACCTACTGATTCTTCAACAAG CAATATGG AAGATGATGATGCACACATACCAGATGGAAGTGGCAGATA CAAATTGATGGCGTTTGTGAGCCATATGGGCACCTCTACCCATTGTGGGCACTACGTTGCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATACCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGC GGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCTTCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCATGAAAACTTTGGACTGGCTCAACTTTTTACATATGAAATGGAAAACAAAAGGCAAGGGACGGTCCCTGATGCCGCATATATATTTTGCACATTGTAGCAGAGCGCTGGGTGTTAAAAGATTGGT] [+] EMBL CF306358 [ ACGAGTGCTGCGTCTCCTTCGACACCCCGAGGTCGGAGGGTGGGCTGTACGTCGACATGACCTCGTTCCTGGGGTTCGGGAGGGAGCACGTGGCGTGGAACTACGAGAAGAGTGGGAACCCCGTGTACCTCCACATCGTGCAGCGCCGGAAGCCGGAGCCCGACGACGAGGCGGATCGCCCGCTGAAGAAGCCCACGCTACTCGCCATCGGAGTGGAGGGAGGTTTCACTGATCAAGAACCCGAATACGATGAGGCTTTTGAAATTGTTATCTTGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGACAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGTGGGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCT ] [+] EMBL CF306233 [ GCCATCGGAGTGGAGGGAGGTTTCACTGATCAAGAACCCGAATACGATGAGGCTTTTGAAATTGTTATCTTGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGACAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGCTCAGACGTTTTCTCATACCCAGAAGATGATAGCGTNTGAAGATCCACTATTAGCGCAG CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGA ] [+] EMBL OSS13586A [ ACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGNTCTGAAGCAGCTAGATAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAG TCCACTATTAGCGCAG ATTTGTCACATTTTGGTATTGATTTNTCTTCACTCCAAAAGACCGAGATGACTACTGCTG AAGAGAGCTTTATCACAA ] [+] EMBL OSS12351A [ ACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATGCTATGGATCTGAAGCAGCTAGATAATGGTGTCATTGTGCCACCTACAGGATGGAAGTGCAGCAAGTGTGATAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTACGAACAGACTAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAGATCCACTATTAGCG AGATTTTTGTCACATTTTGG ] [+] EMBL CB627195 [ GATAACCCTGAAAATCTCTGGTTAAATTTAACTGATGGCATGATCCTATGTGGGAGGCGGCTTTGGGATGGAAGT GGGGGGAATAATCATGCTATTGAACACTTCGAACAGACCAAATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTGGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAGATCCACTATTATCGCAG CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGATAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCCCTGGTTATACTGGCCTTGTAAATCTTGGAAATAGTTGCTATATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGCTACTTTGAGAAGCATAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAATGACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGATGCAACAGGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAACACCGGAAACCATGA ] [+] EMBL CF303078 [ AATATCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAG CAGACGTTTTCTCATACCCAGAAGATGATAGCGT TGAAGATCCACTATTAGCGCAG CATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCCCTGGTTATACTGGCCTTGTAAATCTTGGAAATAGTTGCTATATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAATGACAAAGTTGGCTCATGGAATGCTCTCTGGCAAATACTCTGTGCCAAATCAGGAGGGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCAT ] [-] EMBL CB627196 [ GTTCAATTATCTTCATTGCCAGAAAGCTGCTATTAGTACATCAAACACAGGAGTTGAGGAGGCGATGAATTGGCTTCTCTCACACATGGATGATTCAGATATCAACGATCCAATATCTAAAGATTCACAGGCTGCTGAACAAACTGTTGATGAAACTAGCGTTCAAACTCTTGTTTCCTTCGGATTTCAAGAAGATGTTGCTCGAAAGGCCTTGGCAGCTTCTGGTGGAAATATCGAGAGAGCAACAGACTGGATTTTTAGCCACCCTGAGGCTTCTAGCTCAGTACCTACTGATTCTTCAACAAG CAATATGG AAGATGATGATGCACACATACCAGATGGAAGTGGCAGATA CAAATTGATGGCGTTTGTGAGCCATATGGGCACCTCTACCCATTGTGGGCACTACGTTGCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATACCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGCGGGGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCATCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCA ] [+] EMBL AU032695 [ CTCGAAAGCCCTTGGCAGCTTCTGGTGG AATNTCGAGAGNGCAACAGACTGGATTTTTNGCCNCCCTGAGGCTTTTAGCTCAGTACCTACTGATTCTTCAACAAG CAATATGG AAGATGATGATGCACACATACCAGATGGAAGTGGCAGATA CAAATTGATNGCGTTTGTGAGCCATATGGGCACCTCTACCCATTGTGGGC CTACGTTNCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATNCCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGC GGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCTTCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCATGAAAACTTTGGACTGGCTCAACTTTTTACATATGAAATGGAAAACAAAAGGCAAGGGACGGTCCCTGATGCCGCATAAAAAA ] [+] EMBL AU108292 [ cCAACAAGCCAATATGGAAAGATGATGATGCCCACATACCAGATGGAAGTGCCAGANACCAAATTGATGGCGTTTNTGAGCCATATGGGCACCTCTACCCATTGTGGGCA TACGTTNCCCATGTCCTCAAAGACGGGAGGTGGGTAATATTCAATGATAGTAAGGTTGCTGCCTCTGTCGACTTGCCCAAGGATATGGGATACCTGTATTTCTTTCAAAGGATATAAAGCATTAGCAGCTGAAAGACTTCACAGGCAAGAAATACATTCGCTCGCTGACTTGAGTCTTAGTTATGGGCACCTATGATCAAAAGCACGGC GGATAGTCGGTGAACTTGCATGCAGATGGACTTAGAGCGAGTGTTGGTCACATCCTGTCGTGCTGACTTTAGACTGATCGATCAGCTGGGATATCACTTTGTTCCATGGCATTATGCATTGGCACATTCAATTCTTCTTTGTCGATCTATCATCTTAGCGTTAACATTCTGCCATGAAAACTTTGGACTGGCTCAACTTTTTACATATGAAATGGAAAACAAAAGGCAAGGGACGGTCCCTGATGCCGCATAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||