These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1046 fasta sequence [CCTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA-TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGAAGAGAGCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGTTATGTAATCTATTGTGTTTTTGGTCGGTTTGAACCCACANTTACCTTCTTGCTGTNAATGCTGCATCATTAAGCAAGNCTGCAAATTTGACGNTCGAGTTCAAAAAAAAAAAAAANANNAAAAAAAAAAAAAGGGCGGNCCCCA] [+] EMBL CF313357 [CCTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGA TTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAA ] [+] EMBL CF296558 [CCTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCCTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTG ] [+] EMBL AK065132 [ CTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGAAGAGAGCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGTTATGTAATCTATTGTGTTTTTGGTCG ] [+] EMBL CB666651 [ CTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAAGACATGCT ] [+] EMBL AU065490 [ CTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAG GNGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTTGCTCTGATTTTTGCACACACCGNAAAATATTCCGGATGAGCCTCCGTTTTTGAATGTCAAAAGTGTACGAGGGATTGAATCAG AGATCTTGCATCTTTG AAGAAAAG TTTAGCAAGngcact ] [+] EMBL BP184915 [ acgAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTATGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAA ] [-] EMBL CB666652 [ AAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCCCTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGAAGAGAGCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGAGGGTGCGTAATTTACT ] [-] EMBL CF296559 [ CAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGAAGAGAGCAAAAAT TTTTAGGGAAGCACAATG GGTTATATAATA TATAGGT AAGCCT CCAaaaaa ] [+] EMBL OSS10801A [ GCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGNTATGNAATCTATTGTGTTTTTGGNCGGTTTGAACCCACANTTACCTTCTTGCTGTNAATGCTGCATCATTAAGCAAGNCTGCAAATTTGACGNTCGAGTTCAAAAAAAAAAAAAANANNAAAAAAAAAAAAAGGGCGGNCCCCA] consensusID : consensus_12169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [AGGGGGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGGGAGATCGTTTTGAAGCTGAATTGGCGCTACAGTGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAGGGCATGCAATGAAAGGAGCAAGTACCCCTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTCGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAGACCATAGAAGAGGACACTTTGAGCAAAAATGTTTTAGGGAAGCTCAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTGCCTGCTGGTGAGTACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGTTATGTAAAAAAAAAAAAAA] [-] EMBL CA760088 [AGGGGGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGGGAGATCGTTTTGAAGCTGAATTGGCGCTACAGTGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAGGGCATGCAATGAAAGGAGCAAGTACCCCTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTCGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAGACCATAGAAGAGGACACTTTGAGCAAAAATGTTTTAGGGAAGCTCAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTGCCTGCTGGTGAGTACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGTTATGTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12169#0 CCTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAG 60 consensus_12169#1 ------------------------------------------------------------ consensus_12169#0 CACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTC 120 consensus_12169#1 ------------------------------------------------------------ consensus_12169#0 GGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATATCCGGATGA 180 consensus_12169#1 ------------------------------------------------------------ consensus_12169#0 GCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTT 240 consensus_12169#1 ------------------------------------------------------------ consensus_12169#0 GAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCT 300 consensus_12169#1 ------------------------------------------------------------ consensus_12169#0 TGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGA 360 consensus_12169#1 ----AGGGGGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGA 56 * *************************************************** consensus_12169#0 ATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTAC 420 consensus_12169#1 ATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTAC 116 ************************************************************ consensus_12169#0 TGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGC 480 consensus_12169#1 TGTAGAGAGCTTTCTGGCTTGGGGAGATCGTTTTGAAGCTGAATTGGCGCTACAGTGTGC 176 ********************** ******************************** **** consensus_12169#0 CAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACA 540 consensus_12169#1 CAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACA 236 ************************************************************ consensus_12169#0 GTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGA 600 consensus_12169#1 GTATTTTGAAAGTGGAGGGCATGCAATGAAAGGAGCAAGTACCCCTGCTGACGAAGAGGA 296 **************** ***** ******************** **************** consensus_12169#0 GGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCT 660 consensus_12169#1 GGAAGAAGAGGAAGACATCGACTTCGATGAAGACTTCGATGATGACGAAGAGGACATGCT 356 ************************ *********************************** consensus_12169#0 TGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGA 720 consensus_12169#1 TGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAGACCATAGA 416 *************************************************** ******** consensus_12169#0 AGAG---------AGCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAG 771 consensus_12169#1 AGAGGACACTTTGAGCAAAAATGTTTTAGGGAAGCTCAATGTGGTTATATAATATTATAG 476 **** ********************** ************************ consensus_12169#0 GTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTT 831 consensus_12169#1 GTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTT-GCCTGCTGGTGAGTACCTT 535 **************************************** ******** *** ****** consensus_12169#0 CGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTA 891 consensus_12169#1 CGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTA 595 ************************************************************ consensus_12169#0 ATTTACTTCGTTATGTAATCTATTGTGTTTTTGGTCGGTTTGAACCCACANTTACCTTCT 951 consensus_12169#1 ATTTACTTCGTTATGTAAAAAAAAAAAAAA------------------------------ 625 ****************** * consensus_12169#0 TGCTGTNAATGCTGCATCATTAAGCAAGNCTGCAAATTTGACGNTCGAGTTCAAAAAAAA 1011 consensus_12169#1 ------------------------------------------------------------ consensus_12169#0 AAAAAANANNAAAAAAAAAAAAAGGGCGGNCCCCA 1046 consensus_12169#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||