These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2647 fasta sequence [CGCAACATTCTCATTTCTCTCTCTCGTCCCCGCCCCACCCCCACCCACCACACCACACCCCCGTCTCCGCGCGAAAATTCCCACGCCACGCGCGCTGGAAGAGAGGGAAGGCTTTTCCTCCGTTCTCCGCCCACGCGCCGTCATCGCTGCCCGCCTTTCTTCCTCCGCTTTGTTTGGGCCGGAGCGGGGGGCGCACCGGCGCCGGCGACGTCTCTCTTCCGAATCGGGAGGCGGGAGCCAGTTCATGGAATCTGGTGGAATTGATGCTCAAGTCAGAGCAATCGAGCAGCGCACAAGATTGGAGATTCCTATACGTGATTGAGATTGCAAATGTGGCGCCTGTTCAATGAGTTGTGGGATGTTCTAGGATCTGGGTTTTTCTCATCGAGGTTTCTTTAATCCAGCTCAAATCTATTTACACCTCATCCGTTTGCACCGAGATCATCTCTGTGTGTGTGGTCACCGTGAGATTAGGAGGAGATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGCTCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCACGGAGGCAGAGAGGGCCCGGCTTCAGGGTTCATGCCTCCATGGCCCTCAACCTTGGAACCGAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATCGTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACTGGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTCTCGGCCACCACCTCGGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGACAAAGACAGCTTCGTCCTCCTCGGACGCCAAACCGGAGCAGCAAGAGAAGCCTCGTGATCATCAGCCGTCGCAAGAAGTGTCCACCAAGCAGGATGATAAGGCTGAAAATGACACGAAGGCAACAGCCACATCTGGGCCTCTCGAGTTCTCCTTCCATCCTGATGAGCAAACCTTGAGGCTGCAGAGGGCGTGTTCCAGCCCTGTTCCTTTCCCAAGCAACAAGAACATGCTGGTGGCTGATGCTGCAGCACGTAGCTCATCTCTCAAGGTTGCCGGCGAGGGGCCGAAGCCGAAGCCGAAGCAGAGAGCAAGGTCCCCTCCCCTGCGTCGTGACGTTCCTGAGCTGTTCAAGGAGGCCAAATCGTCAAGCAAGAGGTTTTCCACACCGCCACCGCGCCGGAAGCCTTCGTCTCCACCGGCGCCGAGTAGGAGCCCTCCTCATGTCTTTGCCACGGCGAGAGCGCATGGCAAGCCGAAGCATAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAAGTGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAGTCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACCTGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGTCACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAGCCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA-CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACA-CTGGACAATATGCCATGCTTAAACTTGCAA-GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA-TGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAAACATTTGCTTAGCTTTGCTACTGACATTTTCTTCTTTTTGTTTCGTCTGTTACACTGTTTGATACAAGTGACAGAAATGTCTCTATGCAATTCCTTGAAAAAAAAAAATAAAAAAAAAAGCGGGCCGN] [+] EMBL AK102467 [CGCAACATTCTCATTTCTCTCTCTCGTCCCCGCCCCACCCCCACCCACCACACCACACCCCCGTCTCCGCGCGAAAATTCCCACGCCACGCGCGCTGGAAGAGAGGGAAGGCTTTTCCTCCGTTCTCCGCCCACGCGCCGTCATCGCTGCCCGCCTTTCTTCCTCCGCTTTGTTTGGGCCGGAGCGGGGGGCGCACCGGCGCCGGCGACGTCTCTCTTCCGAATCGGGAGGCGGGAGCCAGTTCATGGAATCTGGTGGAATTGATGCTCAAGTCAGAGCAATCGAGCAGCGCACAAGATTGGAGATTCCTATACGTGATTGAGATTGCAAATGTGGCGCCTGTTCAATGAGTTGTGGGATGTTCTAGGATCTGGGTTTTTCTCATCGAGGTTTCTTTAATCCAGCTCAAATCTATTTACACCTCATCCGTTTGCACCGAGATCATCTCTGTGTGTGTGGTCACCGTGAGATTAGGAGGAGATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGCTCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCACGGAGGCAGAGAGGGCCCGGCTTCAGGGTTCATGCCTCCATGGCCCTCAACCTTGGAACCGAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATCGTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACTGGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTCTCGGCCACCACCTCGGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGACAAAGACAGCTTCGTCCTCCTCGGACGCCAAACCGGAGCAGCAAGAGAAGCCTCGTGATCATCAGCCGTCGCAAGAAGTGTCCACCAAGCAGGATGATAAGGCTGAAAATGACACGAAGGCAACAGCCACATCTGGGCCTCTCGAGTTCTCCTTCCATCCTGATGAGCAAACCTTGAGGCTGCAGAGGGCGTGTTCCAGCCCTGTTCCTTTCCCAAGCAACAAGAACATGCTGGTGGCTGATGCTGCAGCACGTAGCTCATCTCTCAAGGTTGCCGGCGAGGGGCCGAAGCCGAAGCCGAAGCAGAGAGCAAGGTCCCCTCCCCTGCGTCGTGACGTTCCTGAGCTGTTCAAGGAGGCCAAATCGTCAAGCAAGAGGTTTTCCACACCGCCACCGCGCCGGAAGCCTTCGTCTCCACCGGCGCCGAGTAGGAGCCCTCCTCATGTCTTTGCCACGGCGAGAGCGCATGGCAAGCCGAAGCATAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAAGTGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAGTCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACCTGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGTCACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAGCCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTCCGCCACCAAAATTGATGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAAACATTTGCTTAGCTTTGCTAGTGACATTTTCTTCTTTTTGTTTCGTCTGTTACACTGTTTGATACAAGTGACAGAAATGTCTCTATGCAATTCCTTGA ] [+] EMBL CB634969 [ CCCACGCCACGCGCGCCGGAAGAGAGGGAAGGCTTTTCCTCCGTTCTCCGCCCACGCGCCGTCATCGTTGCCCGCCTTTCTTCCTCCGCTTTGTTTGGGCCGGAGCGGGGGGCGCACCGGCGCCGGCGACGTCTCTCTTCCGAATCGGGAGGCGGGAGCCAGTTCATGGAATCTGGTGGAATTGATGCTCAAGTCAGAGCAATCGAGCAGCGCACAAGATTGGAGATTCCTATACGTGATTGAGATTGCAAATGTGGCGCCTGTTCAATGAGTTGTGGGATGTTCTAGGATCTGGGTTTTTCTCATCGAGGTTTCTTTAATCCAGCTCAAATCTATTTACACCTCATCCGTTTGCACCGAGATCATCTCTGTGTGTGTGGTCACCGTGAGATTAGGAGGAGATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGCTCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCACGGAGGCAGAGAGGGCCCGG TTCAGGGTTCATG CTCCATGG CCTCAA CTTGGAACCGAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATCGTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACCGGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTNTCGGCCACCACCTCAGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGACAAA ] [+] EMBL CB625398 [ CACCGGC CCCTTAAGGAGCCCTCCTCATGCCTTTGCCACGGCGAGAGCGCTTGGCAAGCCGAAGCATAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAAATGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAGTCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACCTGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGTCACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAGCCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAG ] [-] EMBL CB625397 [ CGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAA ] [+] EMBL CB685049 [ tcccttGGATCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTCCGCCACCAAAATTGATGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTC ] [+] EMBL C91887 [ TGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAAGGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTC ] [+] EMBL CA765987 [ TTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAAACATTTGCTTAGCTTTGCTACTGACATTTTCTTCTTTTTGGTTCGTCTGGTACACTGGTTGATACAAGTGACAGAAATGTCTCTATGCAATTCCTTGAAAAAAAAAAATAAAAAAAAAAGCGGGCCGN] [+] EMBL BI812710 [ GAACCGAGAGCCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGACCAATGTT GGCCTCGCAACCAGATAAAAGGCCTGAATTCT GCAAATAGTACAGATATTGGACAAGTTTAAGCCGGTTCTTGATAAAGATGGAACACCTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCAGTGATCTCTCTGGACCTCCGCCACC AAATTGCTGTAGTTAATCCTCTCCCTTCC AACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAAACATTTGCTTAGCTTTGCTACTGACATTTTCTTCTTTTTGTTTCGTCTGTTACACTGTTTGATACAAGTGACAGAAATGTCTCTATGCcaaaaaaaa ] consensusID : consensus_12192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [TTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACACTGGACAATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCATGGCGATTTTATAGCACAGTAAACATTTGCTTAAAATATAAAG] [-] EMBL CB634970 [TTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACACTGGACAATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCATGGCGATTTTATAGCACAGTAAACATTTGCTTAAAATATAAAG] consensusID : consensus_12192#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [GAAAGTTGATGTTTACAGCTTTGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCACGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCCATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGCGGTTCTTGATAAAGATGGAACACCTGGACATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAATTGCTGTAGTTAATCCTCTCCCTTCCAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTAAAAAAAAAAA] [+] EMBL BI813456 [GAAAGTTGATGTTTACAGCTTTGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCACGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCCATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGCGGTTCTTGATAAAGATGGAACACCTGGACATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAATTGCTGTAGTTAATCCTCTCCCTTCCAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12192#0 CGCAACATTCTCATTTCTCTCTCTCGTCCCCGCCCCACCCCCACCCACCACACCACACCC 60 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 CCGTCTCCGCGCGAAAATTCCCACGCCACGCGCGCTGGAAGAGAGGGAAGGCTTTTCCTC 120 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 CGTTCTCCGCCCACGCGCCGTCATCGCTGCCCGCCTTTCTTCCTCCGCTTTGTTTGGGCC 180 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GGAGCGGGGGGCGCACCGGCGCCGGCGACGTCTCTCTTCCGAATCGGGAGGCGGGAGCCA 240 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GTTCATGGAATCTGGTGGAATTGATGCTCAAGTCAGAGCAATCGAGCAGCGCACAAGATT 300 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GGAGATTCCTATACGTGATTGAGATTGCAAATGTGGCGCCTGTTCAATGAGTTGTGGGAT 360 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GTTCTAGGATCTGGGTTTTTCTCATCGAGGTTTCTTTAATCCAGCTCAAATCTATTTACA 420 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 CCTCATCCGTTTGCACCGAGATCATCTCTGTGTGTGTGGTCACCGTGAGATTAGGAGGAG 480 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 ATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGC 540 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 TCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCA 600 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 CGGAGGCAGAGAGGGCCCGGCTTCAGGGTTCATGCCTCCATGGCCCTCAACCTTGGAACC 660 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATC 720 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACT 780 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTCTCGGCCACCACCTC 840 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGAC 900 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 AAAGACAGCTTCGTCCTCCTCGGACGCCAAACCGGAGCAGCAAGAGAAGCCTCGTGATCA 960 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 TCAGCCGTCGCAAGAAGTGTCCACCAAGCAGGATGATAAGGCTGAAAATGACACGAAGGC 1020 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 AACAGCCACATCTGGGCCTCTCGAGTTCTCCTTCCATCCTGATGAGCAAACCTTGAGGCT 1080 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GCAGAGGGCGTGTTCCAGCCCTGTTCCTTTCCCAAGCAACAAGAACATGCTGGTGGCTGA 1140 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 TGCTGCAGCACGTAGCTCATCTCTCAAGGTTGCCGGCGAGGGGCCGAAGCCGAAGCCGAA 1200 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GCAGAGAGCAAGGTCCCCTCCCCTGCGTCGTGACGTTCCTGAGCTGTTCAAGGAGGCCAA 1260 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 ATCGTCAAGCAAGAGGTTTTCCACACCGCCACCGCGCCGGAAGCCTTCGTCTCCACCGGC 1320 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GCCGAGTAGGAGCCCTCCTCATGTCTTTGCCACGGCGAGAGCGCATGGCAAGCCGAAGCA 1380 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 TAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAA 1440 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GTGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAG 1500 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 TCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACC 1560 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 TGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGT 1620 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 CACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAG 1680 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 CCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCT 1740 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATAT 1800 consensus_12192#1 ------------------------------------------TTCAATTGGTTTGGATAT 18 consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 TGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGA 1860 consensus_12192#1 TGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGA 78 consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGA 1920 consensus_12192#1 GAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGA 138 consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 AGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGA 1980 consensus_12192#1 AGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGA 198 consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTT 2040 consensus_12192#1 GATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTT 258 consensus_12192#2 ---------------------------GAAAGTTGATGTTTACAGCTTTG-CCTTATCTT 32 ** ******************* ********* consensus_12192#0 ATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTT 2100 consensus_12192#1 ATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTT 318 consensus_12192#2 ATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTT 92 ************************************************************ consensus_12192#0 TGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCA-GTAGCTGCCCTGCGCCACTAC 2159 consensus_12192#1 TGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCA-GTAGCTGCCCTGCGCCACTAC 377 consensus_12192#2 T-CTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCACGTAGCTGCCCTGCGCCACTAC 151 * ************************************ ********************* consensus_12192#0 GGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAA 2219 consensus_12192#1 GGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAA 437 consensus_12192#2 GGCTTCTAATTGAGCCATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAA 211 *************** ******************************************** consensus_12192#0 TAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACACTGGACAATA 2279 consensus_12192#1 TAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACACTGGACAATA 497 consensus_12192#2 TAGTACAGATATTGGACAAGTTTAAG-CGGTTCTTGATAAAGATGGAACACCTGGACATA 270 ************************** ******* **************** * *** consensus_12192#0 TGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCC 2339 consensus_12192#1 TGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCC 557 consensus_12192#2 TGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCC 330 ************************************************************ consensus_12192#0 AGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGT 2399 consensus_12192#1 AGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGT 617 consensus_12192#2 AGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAA-TTGCTGTAGT 389 ************************************************* ********** consensus_12192#0 TAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTT 2459 consensus_12192#1 TAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTT 677 consensus_12192#2 TAATCCTCTCCCTTCCAA-CTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCA-TTT 447 ****************** ************************************* *** consensus_12192#0 TTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAA 2519 consensus_12192#1 TTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCATGGCGATTTTATAGCACAGTAA 737 consensus_12192#2 TTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTAAAAAAAAAAA---------- 497 ************************************* * * * consensus_12192#0 ACATTTGCTTAGCTTTGCTACTGACATTTTCTTCTTTTTGTTTCGTCTGTTACACTGTTT 2579 consensus_12192#1 ACATTTGCTTAAAATATAAAG--------------------------------------- 758 consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 GATACAAGTGACAGAAATGTCTCTATGCAATTCCTTGAAAAAAAAAAATAAAAAAAAAAG 2639 consensus_12192#1 ------------------------------------------------------------ consensus_12192#2 ------------------------------------------------------------ consensus_12192#0 CGGGCCGN 2647 consensus_12192#1 -------- consensus_12192#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||