These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1842 fasta sequence [CGCTTCTCCACTCCTCCCTCGCCGCCCTCTCGGCCGCGCCGCCGTCCTCCCGCCGCCGCAGGGCCTTCTTCCATCACTCCTGCCGCCCGCTCCCTTCGTCGGCGGCGGCGGCGGCCAAGGCGTTGCGCGCGTCGGCTGCCCCCGCCGTCGACGAGGAGGCCCCCGCATCCCCGCCTCCATCAGATCTTGGCAAGGGAGTGGAGAACTTGGTGATCATAGGCTCTGGCCCGGCGGGGTACACTGCCGCGATTTACGCCGCTCGGGCGAACCTCAAGCCCGTCGTGTTCGAAGGCTACCAGGTTGGTGGCGTTCCTGGTGAGCAGCTGATGACCACCACCGAGGTGGAGAATTTCCCTGGGTTTCCGGATGGCGTCACTGGGCCTGATCTCATGGACAAAATGCGGAAGCAAGCGGAGCGGTGGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAGAGCAGACCGTTTGTTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATTGCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGAGGTATCAGTGCATGTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAGTTCTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGAAGCTATATATTTGACCAAATATGCACGTCACGTTCATTTACTTGTTCGAAAGGATCAGCTACGAGCATCCAAAGCTATGCAGGACCGGTTGATTATGGCGAATGTTTCAGAGTACTCAACAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCAGCAATCCCAAAGGCCAGATGTCTGGTATTCAACTGAAGAGAACCGACACGGGAGAGGAATCAGTTCTTGAGGTGAAAGGTCTATTCTATGGCATAGGACACACTCCAAACAGTCAGTTGTTACAAGGTCAAATTGATCTTGACGATGCTGGTTATATTTTGGTTGAAGAAGGCACAGCAAAAACATCAGTTGATGGTGTATTTGCTGCTGGTGATGTGCAGGATCATGAATGGAGGCAAGCCGTTACTGCAGCTGGATCCGGATGTGTAGCCGCTTTGTCGGTGGAAAGATACTTAGTTGCCAACGACCTTCTTGTTGAATTTCACCAGCCTGTTCGCGAAGAAAAGGAGAAGGAGATTACAGATAGAGATGTCGAGATGGGCTTTGACATTTCTCACACAAAGCATAGGGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATATACTTCTCCAACATGTGGTCCTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATAGATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGCTCAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAATTTTCAGATGGGCCGGGTGTAGTGCGGTTCAAGAGGAAATTAGCCGGTCGCTCCTATTGAATTCAATCAATGTAACAGAATATATTCTTTTGCTGTACAACAACGTATTGGTCGTTGTCTTGACACCGTGCAAACTCCTCCC-TGACAATATATACGTCTTAAAGATTTAAAAAAA] [+] EMBL AK068311 [CGCTTCTCCACTCCTCCCTCGCCGCCCTCTCGGCCGCGCCGCCGTCCTCCCGCCGCCGCAGGGCCTTCTTCCATCACTCCTGCCGCCCGCTCCCTTCGTCGGCGGCGGCGGCGGCCAAGGCGTTGCGCGCGTCGGCTGCCCCCGCCGTCGACGAGGAGGCCCCCGCATCCCCGCCTCCATCAGATCTTGGCAAGGGAGTGGAGAACTTGGTGATCATAGGCTCTGGCCCGGCGGGGTACACTGCCGCGATTTACGCCGCTCGGGCGAACCTCAAGCCCGTCGTGTTCGAAGGCTACCAGGTTGGTGGCGTTCCTGGTGAGCAGCTGATGACCACCACCGAGGTGGAGAATTTCCCTGGGTTTCCGGATGGCGTCACTGGGCCTGATCTCATGGACAAAATGCGGAAGCAAGCGGAGCGGTGGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAGAGCAGACCGTTTGTTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATTGCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGAGGTATCAGTGCATGTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAGTTCTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGAAGCTATATATTTGACCAAATATGCACGTCACGTTCATTTACTTGTTCGAAAGGATCAGCTACGAGCATCCAAAGCTATGCAGGACCGGTTGATTATGGCGAATGTTTCAGAGTACTCAACAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCAGCAATCCCAAAGGCCAGATGTCTGGTATTCAACTGAAGAGAACCGACACGGGAGAGGAATCAGTTCTTGAGGTGAAAGGTCTATTCTATGGCATAGGACACACTCCAAACAGTCAGTTGTTACAAGGTCAAATTGATCTTGACGATGCTGGTTATATTTTGGTTGAAGAAGGCACAGCAAAAACATCAGTTGATGGTGTATTTGCTGCTGGTGATGTGCAGGATCATGAATGGAGGCAAGCCGTTACTGCAGCTGGATCCGGATGTGTAGCCGCTTTGTCGGTGGAAAGATACTTAGTTGCCAACGACCTTCTTGTTGAATTTCACCAGCCTGTTCGCGAAGAAAAGGAGAAGGAGATTACAGATAGAGATGTCGAGATGGGCTTTGACATTTCTCACACAAAGCATAGGGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATATACTTCTCCAACATGTGGTCCTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATAGATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGCTCAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACGGTGGTGGCCAATTTTTGGTCAAAAATTTTCAGATGGGCCGGGTGTAGTGCGGTTCAAGAGGAAATTAGCCGGTCGCTCCTATTGAATTCAATCAATGTAACAGAATATATTCTTTTGCTGTACAACAACGTATTGGTCGTTGTCTTGACACCGTGCAAACTCCTCCC TGACAATATATACGTCTTA ] [-] EMBL CB676821 [ ATGGAGGCAAGCCGTTACTGCAGCTGGATCCGGATGTGTAGCCGCTTTGTCGGTGGAAAGATACTTAGTTGCCAACGACCTTCTTGTTGAATTTCACCAGCCTGTTCGCGAAGAAAAGGAGAAGGAGATTACAGATAGAGATGTCGAGATGGGCTTTGACATTTCTCACACAAAGCATAGGGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATATACTTCTCCAACATGTGGTCCTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATAGATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGCTCAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAATTTTCAGATGGGCCGGGTGTAGTGCGGTTCAAGAGGAAATTAGCCGGTCGCTCCTATTGAATTCAATCAATGTAACAGAATATATTCTTTTGCTGTACAACAACGTATTGGTCGTTGTCTTGACACCGTGCAAACTCCTCCCATGACAATATATACGTCTTAAAG ] [+] EMBL AU100658 [ GCCAACGACCTTCTTGTTGAATTTCACCAGCCTGTTCGCGAAGAAAAGGAGAAGGAGATTACAGATAGAGATGTCGAGATGGGCTTTGACATTTCTCACACAAAGCATAGGGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATATACTTCTCCAACATGTGGTCCTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATAGATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGCTCAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAATTTTCAGATGGGCCGGGTGTAGTGCGGTTCAAGAGGAAATTAGCCGGTCGCTCCTATTGAATTCAATCAATGTAACAGAATATATTCTTTTGCTGTACAACAACGTATTGGTCGTTGTCTTGACACCGTGCAAACTCCTCCC TGACAATATATACGTCTTAAAGATTTAAAAAAA] consensusID : consensus_12198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1665 fasta sequence [CCCTCTCCTCTACTCCACACCCTCCGCTTCTCCACTCCTCCCTCGCGATGGCGGTCACGCGCCTCGCCGTGGCCGCCGCCCTCTCGGCCAAGGCGTTGCGCGCGTCGGCTGCCCCCGCCGTCGACGAGGAGGCCCCCGCATCCCCGCCTCCATCAGATCTTGGCAAGGGAGTGGAGAACTTGGTGATCATAGGCTCTGGCCCGGCGGGGTACACTGCCGCGATTTACGCCGCTCGGGCGAACCTCAAGCCCGTCGTGTTCGAAGGCTACCAGGTTGGTGGCGTTCCTGGTGGGCAGCTGATGACCACCACCGAGGTGGAGAATTTCCCTGGGTTTCCGGATGGCGTCACTGGGCCTGATCTCATGGACAAAATGCGGAAGCAAGCGGAGCGGTGGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAGAGCAGACCGTTTGTTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATTGCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGAGGTATCAGTGCATGTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAGTTCTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGAAGCTATATATTTGACCAAATATGCACGTCACGTTCATTTACTTGTTCGAAAGGA-TCAGCTACGAGCATCCAAAGCTATGCAGGACCGAGTACTCAACAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCAGCAATCCCAAAGGCCAGATGTCTGGTATTCAACTGAAGAGAACCGACACGGGAGAGGAATCAGTTCTTGAGGTGAAAGGTCTATTCTATGGCATAGGACACAC-TCCAAACAGTCAGTTGTTACAAGGTCAAA-TTGATCTTGAC-GATGCTGGTTATATTTTGGTTGAAGAAGGCACAGCAAAAACATCAGTTGATGGTGTATTTGCTGCTGGTGATGTGCAGGATCATGAATGGAGGCAAGCCGTTACTGCAGCTGGATCCGGATGTGTAGCCGCTTTGTCGGTGGAAAGATACTTAGTTGCCAACGACCTTCTTGTTGAATTTCACCAGCCTGTTCGCGAAGAAAAGGAGAAGGAGATTACAGATAGAGATGTCGAGATGGGCTTTGACATTTCTCACACAAAGCATAGGGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATATACTTCTCCAACATGTGGTCCTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATAGATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGCTCAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAA-TTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAATTTTCAGATGGGCCGGGTGTAGTGCGGTTCAAGAGGAAATTAGCCGGT] [+] EMBL OSA582621 [CCCTCTCCTCTACTCCACACCCTCCGCTTCTCCACTCCTCCCTCGCGATGGCGGTCACGCGCCTCGCCGTGGCCGCCGCCCTCTCGGCCAAGGCGTTGCGCGCGTCGGCTGCCCCCGCCGTCGACGAGGAGGCCCCCGCATCCCCGCCTCCATCAGATCTTGGCAAGGGAGTGGAGAACTTGGTGATCATAGGCTCTGGCCCGGCGGGGTACACTGCCGCGATTTACGCCGCTCGGGCGAACCTCAAGCCCGTCGTGTTCGAAGGCTACCAGGTTGGTGGCGTTCCTGGTGGGCAGCTGATGACCACCACCGAGGTGGAGAATTTCCCTGGGTTTCCGGATGGCGTCACTGGGCCTGATCTCATGGACAAAATGCGGAAGCAAGCGGAGCGGTGGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAGAGCAGACCGTTTGTTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATTGCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGAGGTATCAGTGCATGTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAGTTCTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGAAGCTATATATTTGACCAAATATGCACGTCACGTTCATTTACTTGTTCGAAAGGA TCAGCTACGAGCATCCAAAGCTATGCAGGACCGAGTACTCAACAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCAGCAATCCCAAAGGCCAGATGTCTGGTATTCAACTGAAGAGAACCGACACGGGAGAGGAATCAGTTCTTGAGGTGAAAGGTCTATTCTATGGCATAGGACACAC TCCAAACAGTCAGTTGTTACAAGGTCAAA TTGATCTTGAC GATGCTGGTTATATTTTGGTTGAAGAAGGCACAGCAAAAACATCAGTTGATGGTGTATTTGCTGCTGGTGATGTGCAGGATCATGAATGGAGGCAAGCCGTTACTGCAGCTGGATCCGGATGTGTAGCCGCTTTGTCGGTGGAAAGATACTTAGTTGCCAACGACCTTCTTGTTGAATTTCACCAGCCTGTTCGCGAAGAAAAGGAGAAGGAGATTACAGATAGAGATGTCGAGATGGGCTTTGACATTTCTCACACAAAGCATAGGGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATATACTTCTCCAACATGTGGTCCTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATAGATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGCTCAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAA TTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAATTTTCAGATGGGCCGGGTGTAGTGCGGTTCAAGAGGAAATTAGCCGGT] [+] EMBL C26099 [ CATAGTGTAATCATTGCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGAGGTATCAGTGCATGTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAGTTCTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGAAGCTATATATTTGACCAAATATGCACGTCACGTTCATTTACTTGTTCGAAAGGA TCAGCTACGAGCATCCAAAGCTATGCAGGACCGAGTACTCAACAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCAGCAATCCCAAAGGCCAGATGTCTGGTATTCAACTGAAGNGAACCGACACGGGAGANGAATCAGTTCTTGAGGTGAAAGGTCTATTCTATGGCATAGGGCACACTTCCAAACAGTCAGTTGTT CAAGGNCAAATTTGATCTTGACGGTTGCTGGGTA ] [+] EMBL CB684688 [ AAGGACTC TCTACGAGCATCCAAAGCTATGCAGGACCGAGTACTCAACAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCAGCAATCCCAAAGGCCAGATGTCTGGTATTCAACTGAAGAGAACCGACACGGGAGAGGAATCAGTTCTTGAGGTGAAAGGTCTATTCTATGGCATAGGACACAC TCCAAACAGTCAGTTGTTACAAGGTCAAA TTGATCTTGAC GATGCTGGTTATATTTTGGTTGAAGAAGGCACAGCAAAAACATCAGTTGATGGTGTATTTGCTGCTGGTGATGTGCAGGATCATGAATGGAGGCAAGCCGTTACTGCAGCTGGATCCGGATGTGTAGCCGCTTTGTCGGTGGAAAGATACTTAGTTGCCAACGACCTTCTTGTTGAATTTCACCAGCCTGTTCGCGAAGAAAAGGAGAAGGAGATTACAGATAGAGATGTCGAGATGGGCTTTGACATTTCTCACACAAAGCATAGGGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATATACTTCTCCAACATGTGGTCCTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATAGATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGCTCAAGACTGTCTCTGGTGTTAAAATGAAGAAGG ATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAATTTTTAAAGTGTAATAGTCTTCTTTTGCCCATAC ] [+] EMBL CF325861 [ CAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATATACTTCTCCAACATGTGGTCCTTGCAGAACCTTATATTCTATTCTAAGCAAGGTTATATATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGCTCAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAA TTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTT ] consensusID : consensus_12198#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1034 fasta sequence [ACTCCACACCCTCCGCTTCTCCACTCCTCCCTCGCGATGGCGGTCACGCGCCTCGCCGTGGCCGCCGCCCTCTCGGCCGCGCCGCCGTCCTCCCGCCGCCGCAGGGCCTTCTTCCATCACTCCTGCCGCCCGCTCCCTTCGTCGGCGGCGGCGGCGGCCAAGGCGTTGCGCGCGTCGGCTGCCCCCGCCGTCGACGAGGAGGCCCCCGCATCCCCGCCTCCATCAGATCTTGGCAAGGGAGTGGAGAACTTGGTGATCATAGGCTCTGGCCCGGCGGGGTACACTGCCGCGATTTACGCCGCTCGGGCGAACCTCAAGCCCGTCGTGTTCGAAGGCTACCAGGTTGGTGGCGTTCCTGGTGGGCAGCTGATGACCACCACCGAGGTGGAGAATTTCCCTGGGTTTCCGGATGGCGTCACTGGGCCTGATCTCATGGACAAAATGCGGAAGCAAGCGGAGCGGTGGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAGAGCAGACCGTTTGTTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATTGCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGAGGTATCAGTGCATGTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAGTTCTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGAAGCTATATATTTGACCNAATATGCACGTCACGTTCATTTACTTGTTCGAAAGGATCAGCTACGAGCATCCAAAGCTATGCAGGACCGAGTACTCAGCAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCAGCAATCCCAAAGGCCAGATGTCTGGTATTCAACTGAAGAGNACTGACACGGGANNNNAATCAGTTCTTGAGGTGAAAGGTCTATTCTATGGCATNNNACACACTCNNNNCAGTCAGTTGTT-CNNNNTCAAATTGATCTTGANNATGCTGGTNATATTTTGGTT] [+] EMBL CB676820 [ACTCCACACCCTCCGCTTCTCCACTCCTCCCTCGCGATGGCGGTCACGCGCCTCGCCGTGGCCGCCGCCCTCTCGGCCGCGCCGCCGTCCTCCCGCCGCCGCAGGGCCTTCTTCCATCACTCCTGCCGCCCGCTCCCTTCGTCGGCGGCGGCGGCGGCCAAGGCGTTGCGCGCGTCGGCTGCCCCCGCCGTCGACGAGGAGGCCCCCGCATCCCCGCCTCCATCAGATCTTGGCAAGGGAGTGGAGAACTTGGTGATCATAGGCTCTGGCCCGGCGGGGTACACTGCCGCGATTTACGCCGCTCGGGCGAACCTCAAGCCCGTCGTGTTCGAAGGCTACCAGGTTGGTGGCGTTCCTGGTGGGCAGCTGATGACCACCACCGAGGTGGAGAATTTCCCTGGGTTTCCGGATGGCGTCACTGGGCCTGATCTCATGGACAAAATGCGGAAGCAAGCGGAGCGGTGGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAGAGCAGACCGTTTGTTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATTGCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGAGGTATCAGTGCATGTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAGTTCTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGAAGCTATATATTTGACCNAATATGCACGTCACGTTCATTTACTTGTTCGAAAGGATCAGCTACGAGCATCCAAAGCTATGCAGGACCG ] [+] EMBL CF196485 [ GGACAAAATGCGGAAGCAAGCGGAGCGGTGGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAGAGCAGACCGTTTGTTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATTGCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGAGGTATCAGTGCATGCGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAGTTCTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGAAGCTATATATTTGACCAAATATGCACGTCACGTTCATTTACTTGTTCGAAAGGATCAGCTACGAGCATCCAAAGCTATGCAGGACCGAGTACTCAGCAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCAGCAATCCCAAAGGCCAGATGTCTGGTATTCAACTGAAGAGNACTGACACGGGANNNNAATCAGTTCTTGAGGTGAAAGGTCTATTCTATGGCATNNNACACACTCNNNNCAGTCAGTTGTTACNNNNTCAAATTGATCTTGANNATGCTGGTNATATTTTGGTT] consensusID : consensus_12198#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [CCCAACGGCGCCGCGGAGCNAAGGATCCAGAAATAGCAGAAGCTGCAGGCATCATGGGNACACCATGNGNTCAATTTTTTAAAAATAAAGAAATGCTCAGGNCTGTCTCTGGTGNTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAATTTTCAGATGGGCCGGGTGTAGTGCGGTTCAAGAGGAAATTAGCCGGTCGCTCCTATTGAATTCAATCAATGTAACAGAATATATTCTTTTGCTGTACAACAACGTATTGGTCGTTGTCTTGACACCGTGCAAACTCCTCCCTGACAATA] [+] EMBL AA752031 [CCCAACGGCGCCGCGGAGCNAAGGATCCAGAAATAGCAGAAGCTGCAGGCATCATGGGNACACCATGNGNTCAATTTTTTAAAAATAAAGAAATGCTCAGGNCTGTCTCTGGTGNTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATACGATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAATTTTCAGATGGGCCGGGTGTAGTGCGGTTCAAGAGGAAATTAGCCGGTCGCTCCTATTGAATTCAATCAATGTAACAGAATATATTCTTTTGCTGTACAACAACGTATTGGTCGTTGTCTTGACACCGTGCAAACTCCTCCCTGACAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12198#0 CGCTTCTCCACTCCTCCCTCGCCGCCCTCTCGGCCGCGCCGCCGTCCTCCCGCCGCCGCA 60 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 GGGCCTTCTTCCATCACTCCTGCCGCCCGCTCCCTTCGTCGGCGGCGGCGGCGGCCAAGG 120 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 CGTTGCGCGCGTCGGCTGCCCCCGCCGTCGACGAGGAGGCCCCCGCATCCCCGCCTCCAT 180 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 CAGATCTTGGCAAGGGAGTGGAGAACTTGGTGATCATAGGCTCTGGCCCGGCGGGGTACA 240 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 CTGCCGCGATTTACGCCGCTCGGGCGAACCTCAAGCCCGTCGTGTTCGAAGGCTACCAGG 300 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 TTGGTGGCGTTCCTGGTGAGCAGCTGATGACCACCACCGAGGTGGAGAATTTCCCTGGGT 360 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 TTCCGGATGGCGTCACTGGGCCTGATCTCATGGACAAAATGCGGAAGCAAGCGGAGCGGT 420 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 GGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAGAGCAGACCGTTTG 480 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 TTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATTGCTACTGGTGCTG 540 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 CTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGAGGTATCAGTGCAT 600 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 GTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAGTTCTTGCAGTTGTTGGAG 660 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 GTGGTGATACAGCTACAGAGGAAGCTATATATTTGACCAAATATGCACGTCACGTTCATT 720 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 TACTTGTTCGAAAGGATCAGCTACGAGCATCCAAAGCTATGCAGGACCGGTTGATTATGG 780 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 CGAATGTTTCAGAGTACTCAACAATCCCAACATAACAGTACATTTCAATACAGAAGCTGT 840 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------------------------------ consensus_12198#2 -----------------------------ACTCCACACCCTCCGCTTCTCCACTCCTCCC 31 consensus_12198#0 GGATGTTGTCAGCAATCCCAAAGGCCAGATGTCTGGTATTCAACTGAAGAGAACCGACAC 900 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ------------------------------------CCCTCTCCTCTACTCCACACCCTC 24 consensus_12198#2 TCGCGATGGCGGTCACGCGCCTCGCCGTGGCCGCCGCCCTCTCGGCCGCGCCGCCGTCCT 91 consensus_12198#0 GGGAGAGGAATCAGTTCTTGAGGTGAAAGGTCTATTCTATGGCATAGGACACACTCCAAA 960 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 CGCTTCTCCAC----TCCTCCCTCGCGATGGCGGTCACGCGCCTCGCCGTGGCCGCCGCC 80 consensus_12198#2 CCCGCCGCCGCAGGGCCTTCTTCCATCACTCCTGCCGCCCGCTCC-CTTCGTCGGCGGCG 150 consensus_12198#0 CAGTCAGTTGTTACAAGGTCAAATTGATCTTGACGATGCTGGTTATATTTTGGTTGAAGA 1020 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 CTCTCGGCCAAGGCGTTGCGCGCGTCGGCTGCCCCCGCCGTCGACGAGGAGGCCCCCGCA 140 consensus_12198#2 GCGGCGGCCAAGGCGTTGCGCGCGTCGGCTGCCCCCGCCGTCGACGAGGAGGCCCCCGCA 210 consensus_12198#0 AGGCACAGCAAAAACATCAGTTGATGGTGTATTTGCTGCTGGTGATGTGCAGGATCATGA 1080 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 TCCCCGCCTCCATCAGATCTTGGCAAGGGAGTGGAGAACTTGGTGATCATAGGCTCTGGC 200 consensus_12198#2 TCCCCGCCTCCATCAGATCTTGGCAAGGGAGTGGAGAACTTGGTGATCATAGGCTCTGGC 270 consensus_12198#0 ATGGAGGCAAGCCGTTACTGCAGCTGGATCCGGATGTGTAGCCGCTTTGTCGGTGGAAAG 1140 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 CCGGCGGGGTACACTGCCGCGATTTACGCCGCTCGGGCGAACCTCAAGCCCGTCGTGTTC 260 consensus_12198#2 CCGGCGGGGTACACTGCCGCGATTTACGCCGCTCGGGCGAACCTCAAGCCCGTCGTGTTC 330 consensus_12198#0 ATACTTAGTTGCCAACGACCTTCTTGTTGAATTTCACCAGCCTGTTCGCGAAGAAAAGGA 1200 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 GAAGGCTACCAGGTTGGTGGCGTTCCTGGTGGGCAGCTGATGACCACCACCGAGGTGGAG 320 consensus_12198#2 GAAGGCTACCAGGTTGGTGGCGTTCCTGGTGGGCAGCTGATGACCACCACCGAGGTGGAG 390 consensus_12198#0 GAAGGAGATTACAGATAGAGATGTCGAGATGGGCTTTGACATTTCTCACACAAAGCATAG 1260 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 AATTTCCCTGGGTTTCCGGATGGCGTCACTGGGCCTGATCTCATGGACAAAATGCGGAAG 380 consensus_12198#2 AATTTCCCTGGGTTTCCGGATGGCGTCACTGGGCCTGATCTCATGGACAAAATGCGGAAG 450 consensus_12198#0 GGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATA 1320 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 CAAGCGGAGCGGTGGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAG 440 consensus_12198#2 CAAGCGGAGCGGTGGGGTGCTGAGCTTCACCAGGAGGATGTTGAGTTTGTGAATGTGAAG 510 consensus_12198#0 TACTTCTCCAACATGTGGTCCTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATAGA 1380 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 AGCAGACCGTTTGTTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATT 500 consensus_12198#2 AGCAGACCGTTTGTTATTCGTAGCAGTGATCGTGAGGTGAAATGCCATAGTGTAATCATT 570 consensus_12198#0 TGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGC 1440 consensus_12198#3 ----------------------CCCAACGGCGCCG-CGGAGCNAAGGATCCAGAAATAGC 37 consensus_12198#1 GCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGA 560 consensus_12198#2 GCTACTGGTGCTGCTGCTAAGCGCCTTCGATTACCTCGTGAAGATGAATTTTGGAGTAGA 630 ** * * ** * * *** consensus_12198#0 AGAAGC--TGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATG 1498 consensus_12198#3 AGAAGC--TGCAGGCATCATGGGNACACCATGNGNTCAATTTTTTAAAAATAAAGAAATG 95 consensus_12198#1 GGTATCAGTGCATGTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAG---TT 617 consensus_12198#2 GGTATCAGTGCATGTGCAATATGTGATGGAGCATCCCCACTATTTAAGGGTCAAG---TT 687 * * * **** * ** * * * * * ***** * *** * consensus_12198#0 CTCAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAAC 1558 consensus_12198#3 CTCAGGNCTGTCTCTGGTGNTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAAC 155 consensus_12198#1 CTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGA--AGCTATATATTTGACCAAAT 675 consensus_12198#2 CTTGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGA--AGCTATATATTTGACCNAAT 745 ** *** **** * * * * ** * * * *** * ** consensus_12198#0 AAATGAGCTGAACCCAAC-ATACGATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCC 1617 consensus_12198#3 AAATGAGCTGAACCCAAC-ATACGATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCC 214 consensus_12198#1 ATGCACGTCACGTTCATTTACTTGTTCGAAAGGATCAGCTACGAGCATCCAAAGCTATGC 735 consensus_12198#2 ATGCACGTCACGTTCATTTACTTGTTCGAAAGGATCAGCTACGAGCATCCAAAGCTATGC 805 * * ** * * * *** * * * * ** * * consensus_12198#0 AT-ACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAA--------- 1667 consensus_12198#3 AT-ACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAA--------- 264 consensus_12198#1 AGGACCGAGTACTCAACAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATG 795 consensus_12198#2 AGGACCGAGTACTCAGCAATCCCAACATAACAGTACATTTCAATACAGAAGCTGTGGATG 865 * ** ** ** * * *** * * * **** ** ** consensus_12198#0 TTTTCAG-------ATGGGCCGGGTGTAGTGCGGTTCAA--GAGGAAATTAGCCGGTCGC 1718 consensus_12198#3 TTTTCAG-------ATGGGCCGGGTGTAGTGCGGTTCAA--GAGGAAATTAGCCGGTCGC 315 consensus_12198#1 TTGTCAGCAATCCCAAAGGCCAGATGTC-TGGTATTCAACTGAAGAGAACCGACACGGGA 854 consensus_12198#2 TTGTCAGCAATCCCAAAGGCCAGATGTC-TGGTATTCAACTGAAGAGNACTGACACGGGA 924 ** **** * **** * *** ** ***** ** ** * * * consensus_12198#0 TCCTATTGAATTCAATCAATGTAACAGAATATATTCTTTTGCTGTACAACAACGTATTGG 1778 consensus_12198#3 TCCTATTGAATTCAATCAATGTAACAGAATATATTCTTTTGCTGTACAACAACGTATTGG 375 consensus_12198#1 GAGGAATCAGTTC--TTGAGGTGA-AAGGTCTATTCTATGGC-ATAGGACA-CACTCCAA 909 consensus_12198#2 NNNNAATCAGTTC--TTGAGGTGA-AAGGTCTATTCTATGGC-ATNNNACA-CACTCNNN 979 * * * *** * * ** * * * ****** * ** * *** * consensus_12198#0 TCGTTGTCTTGACACCGTGCAAACTCCTCCCTGACAATATATACGTCTTAAAGATTTAAA 1838 consensus_12198#3 TCGTTGTCTTGACACCGTGCAAACTCCTCCCTGACAATA--------------------- 414 consensus_12198#1 ACAGTCAGTTGTTACAAGGTCAAATTGATCTTGACGATGCTGGTTATATTTTGGTTGAAG 969 consensus_12198#2 NCAGTCAGTTGTT-CNNNNTCAAATTGATCTTGANNATGCTGGTNATATTTTGGTT---- 1034 * * *** * ** * * *** ** consensus_12198#0 AAAA-------------------------------------------------------- 1842 consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 AAGGCACAGCAAAAACATCAGTTGATGGTGTATTTGCTGCTGGTGATGTGCAGGATCATG 1029 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 AATGGAGGCAAGCCGTTACTGCAGCTGGATCCGGATGTGTAGCCGCTTTGTCGGTGGAAA 1089 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 GATACTTAGTTGCCAACGACCTTCTTGTTGAATTTCACCAGCCTGTTCGCGAAGAAAAGG 1149 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 AGAAGGAGATTACAGATAGAGATGTCGAGATGGGCTTTGACATTTCTCACACAAAGCATA 1209 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 GGGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTAT 1269 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ATACTTCTCCAACATGTGGTCCTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATAG 1329 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAG 1389 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 CAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGC 1449 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 TCAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACA 1509 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 AATGAGCTGAACCCAACATACGATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCCAT 1569 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------------------------------ consensus_12198#3 ------------------------------------------------------------ consensus_12198#1 ACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGGTCAAAAATTTTCAGATGGG 1629 consensus_12198#2 ------------------------------------------------------------ consensus_12198#0 ------------------------------------ consensus_12198#3 ------------------------------------ consensus_12198#1 CCGGGTGTAGTGCGGTTCAAGAGGAAATTAGCCGGT 1665 consensus_12198#2 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||