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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1338 fasta sequence
[CCCCGCCCCGCCCATCTTGTCAGATCCTTCTTCATAGTTACGACCAATCCTATCCAATCCAATTGTTTTGAGAACCAAGGGAATTAAGGAGAAGAATCGAGGAAGAAGAAGAGGCCATGGTTGTGTACGAGCAGGATCCGGATGTTCTCCGATGGAGCCTTCACCTTCTTCTTCCACCCGCCGCTGCCCTACACTACCAACAACGCACCAGCAGCGTCGACTGCGATGAGATGATCGCCCACGCCCTCCAGGAGGAGCTTTCCTACGCCCAATCCCAATCCCTATCCTCCTCCATCCTCCATCTCCCCCCCTCTGCTCCTCCACTAAAGGAAGACGAACAAGATGATGCGCCACCACCACCACCCCCCTTTAGTTCTTGTTCAACCCCTGCAGATTATACTAATACTAATAATCATAATGCCCATGACTGCTTAATCGAGTTTGTCGATGATTTCTCTGCTCTAGATGGCCAAGTTGGCAAAAGATTACACGACATGATTCCCATTCCTCATGTTCCAAAAACTAACGGGGACATTCCTTCTGTTGATGAAGCCTTTTCAGATCACCAAAGACTCCTTCACAGGTTGGAGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAGTTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAGCTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAGAACGGGGAGTGGGGTGACCACG-TTACATTGCAGGCTGCTGCAGACTCGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAGAGTTGGGTTTAGAATAGAGTAGCTGGGTGTGGAGCTATCTAAACCTCTTCTCTGTCTCTAATTTATTTTGCAACATGTTTGGTTGAAAAAAAAGA]
[+] EMBL AK071971 [CCCCGCCCCGCCCATCTTGTCAGATCCTTCTTCATAGTTACGACCAATCCTATCCAATCCAATTGTTTTGAGAACCAAGGGAATTAAGGAGAAGAATCGAGGAAGAAGAAGAGGCCATGGTTGTGTACGAGCAGGATCCGGATGTTCTCCGATGGAGCCTTCACCTTCTTCTTCCACCCGCCGCTGCCCTACACTACCAACAACGCACCAGCAGCGTCGACTGCGATGAGATGATCGCCCACGCCCTCCAGGAGGAGCTTTCCTACGCCCAATCCCAATCCCTATCCTCCTCCATCCTCCATCTCCCCCCCTCTGCTCCTCCACTAAAGGAAGACGAACAAGATGATGCGCCACCACCACCACCCCCCTTTAGTTCTTGTTCAACCCCTGCAGATTATACTAATACTAATAATCATAATGCCCATGACTGCTTAATCGAGTTTGTCGATGATTTCTCTGCTCTAGATGGCCAAGTTGGCAAAAGATTACACGACATGATTCCCATTCCTCATGTTCCAAAAACTAACGGGGACATTCCTTCTGTTGATGAAGCCTTTTCAGATCACCAAAGACTCCTTCACAGGTTGGAGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAGTTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAGCTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAGAACGGGGAGTGGGGTGACCACG TTACATTGCAGGCTGCTGCAGACTCGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAGAGTTGGGTTTAGAATAGAGTAGCTGGGTGTGGAGCTATCTAAACCTCTTCTCTGTCTCTAATTTATTTTGCAACATGTTT ]
[+] EMBL CF309744 [ AGATCCTTCTTCATAGTTACGACCAATCCTATCCAATCCAATTGTTTTGAGAACCAAGGGAATTAAGGAGAAGAATCGAGGAAGAAGAAGAGGCCATGGTTGTGTACGAGCAGGATCCGGATGTTCTCCGATGGAGCCTTCACCTTCTTCTTCCACCCGCCGCTGCCCTACACTACCAACAACGCACCAGCAGCGTCGACTGCGATGAGATGATCGCCCACGCCCTCCAGGAGGAGCTTTCCTACGCCCAATCCCAATCCCTATCCTCCTCCATCCTCCATCTCCCCCCCTCTGCTCCTCCACTAAAGGAAGACGAACAAGATGATGCGCCACCACCACCACCCCCCTTTAGTTCTTGTTCAACCCCTGCAGATTATACTAATACTAATAATCATAATGCCCATGACTGCTTAATCGAGTTTGTCGATGATTTCTCTGCTCTAGATGGCCAAGTTGGCAAAAGATTACACGACATGATTCCCATTCCTCATGTTCCAAAAACTAACGGGGACATTCCTTCTGTTGATGAAGCCTTTTCAGATCACCAAAGACTCCTTCACAGGTTGGAGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGGCATTGTCAGTTCCGAGCATTGTCCGATCAATTTTACCGCACCAC ]
[-] EMBL CB667572 [ GGGGACATTCCTTCTGTTGATGAAGCCTTTTCAGATCACCAAAGACTCCTTCACAGGTTGGAGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAGTTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAGCTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAGAACGGGGAGTGGGGTGACCACG TTACATTGCAGGCTGCTGCAGACTCGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAGAGTTGGGTTTAGAATAGAGTAGCTGGGTGTGGAGCTATCTAAACCTCTTCTGGGTCTCTAATTTATTTTGCAACATGTTTGGTTGAAAAAAAAGA]
[+] EMBL AK062741 [ CAAAGACTCCTTCACAGGTTGGAGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAGTTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAGCTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAGAACGGGGAGTGGGGTGACCACG TTACATTGCAGGCTGCTGCAGACTCGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAG ]
[-] EMBL CF309745 [ AAAGAACGGGGAGTGGGGTGACCACGTTTACATTGCAGGCTGCTGCAGACTCGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAGGGTTGGGTTTAGAATAGAGTAGCTGGGTGTGGAGCTATCTAAACCTCTTCTCTGTCTCTAATTTATTTTGCAACATGTTTGGTTAAAAAAAA ]
consensusID : consensus_12230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence
[TGTGAATGACCAAGTCATGGATTTCCTAGAACCAGGGATACCGTGCATCTGCTCCTTGCTATCAATGTGAAACTCAAGTATCTGCATTGTTTTTTGCAGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGGTAACCTTTCTTTTCAAATTATGTTGCTACTGAATTGTATTACTGAAATTAGCAACTACTTATATTATCCAGTCAAACATAGATGCAGATCTTCATCAGTTGATATGACCCGCCTTATCATTAAGAATCTCTGCATGTAACTTCATTGTTCTTAGTTAGTTTGCATAGTGGATTGTACTTTTTCAATAGATGTGTATCTAATGTGTTTCTGTTCATTTTTTCCTTAAAAAACCCAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAGAGTTGGGTTTAGAATAGAGTAGCTGGGTGTGGAGCTATCTAAACCTCTTCTCTGTCTCTAATTTATTTTGCAACATGTTTGGTTGAAA]
[-] EMBL CB673450 [TGTGAATGACCAAGTCATGGATTTCCTAGAACCAGGGATACCGTGCATCTGCTCCTTGCTATCAATGTGAAACTCAAGTATCTGCATTGTTTTTTGCAGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGGTAACCTTTCTTTTCAAATTATGTTGCTACTGAATTGTATTACTGAAATTAGCAACTACTTATATTATCCAGTCAAACATAGATGCAGATCTTCATCAGTTGATATGACCCGCCTTATCATTAAGAATCTCTGCATGTAACTTCATTGTTCTTAGTTAGTTTGCATAGTGGATTGTACTTTTTCAATAGATGTGTATCTAATGTGTTTCTGTTCATTTTTTCCTTAAAAAACCCAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAGAGTTGGGTTTAGAATAGAGTAGCTGGGTGTGGAGCTATCTAAACCTCTTCTCTGTCTCTAATTTATTTTGCAACATGTTTGGTTGAAA]
[-] EMBL AW069976 [ GCCGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCA ]
consensusID : consensus_12230#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[GGTATTGCTCCCCCTGGACCTTGNTCGTGTTGCTTTTGTGCTACTTGATTTTTCTTCCTCTTTGCCCAACACTCAAACTTCATGATTCTCATAGGTGGTATTGTAATGTCCTCCCTTATCATAATACCAGGCCTATACATCTGTTGTGTTCTCGTTTGAGATTGAGTAGCATTTTGTGAATGACCAAGTCATGGATTTCCTAGAACCAGGGATACCGTGCATCTGCTCCTTGCTATCAATGTGAAACTCAAGTATCTGCATTGTTTTTTGCAGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAGAGTTGGGTTTAAAAAAA]
[+] EMBL AU092234 [GGTATTGCTCCCCCTGGACCTTGNTCGTGTTGCTTTTGTGCTACTTGATTTTTCTTCCTCTTTGCCCAACACTCAAACTTCATGATTCTCATAGGTGGTATTGTAATGTCCTCCCTTATCATAATACCAGGCCTATACATCTGTTGTGTTCTCGTTTGAGATTGAGTAGCATTTTGTGAATGACCAAGTCATGGATTTCCTAGAACCAGGGATACCGTGCATCTGCTCCTTGCTATCAATGTGAAACTCAAGTATCTGCATTGTTTTTTGCAGTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACATAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGGATATTATTGATGTTATATAGGGTCACTTAGAGTTGGGTTTAAAAAAA]
consensusID : consensus_12230#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[CGGCAACAAATAGTGAAACAGCTTGAGTTTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAGAACGGGGAGTGGGGTGACCACGTTACATTGCAGGTTGCTGCAGACTCGTAAGGTGTAAAGATTTTCATCCTGGCATCATTCAGAGATGCTTGCTGCATTGAAATCCTTCCCATTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTCTTGTACCCCTCCCCCTCCACCCTAAGCTTTTCCTGTGGCGGATCCGGTTGTGGCGGCGGATCCCGCGGGTGGATCCGGCAGAGGCCAATTGATTGTTGTTGTTGTTGTTGTTGTTGTGATGATGTTGTTCTTGTTGTTGTGATGATGACTATGATCGATAGTTCGTTGTGGATTGATTTTGGGGGTGAAGAGGGATGGATGCGCTAGGTGCATCGAGCCCTTTTTTTTTTCCCAACGCCGGGAACCATAAAGGTGTCAGTTCCTAAGCAACACCTTTTAGGAGACTCAAAGGTGCTGCTTGCTTGGGAAATCCAGCAACTAACATGTTTTTTGTAGTAGTAATATTTTTGTTTCATATGGGGAATTTATGTTAATTGGAATATTTTCCAAGATTCAAAAAGA]
[-] EMBL CB667490 [CGGCAACAAATAGTGAAACAGCTTGAGTTTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAGAACGGGGAGTGGGGTGACCACGTTACATTGCAGGTTGCTGCAGACTCGTAAGGTGTAAAGATTTTCATCCTGGCATCATTCAGAGATGCTTGCTGCATTGAAATCCTTCCCATTGTTCAGAAATCAGAAAGAGTTATATGCTTGAGTTTCTTGTACCCCTCCCCCTCCACCCTAAGCTTTTCCTGTGGCGGATCCGGTTGTGGCGGCGGATCCCGCGGGTGGATCCGGCAGAGGCCAATTGATTGTTGTTGTTGTTGTTGTTGTTGTGATGATGTTGTTCTTGTTGTTGTGATGATGACTATGATCGATAGTTCGTTGTGGATTGATTTTGGGGGTGAAGAGGGATGGATGCGCTAGGTGCATCGAGCCCTTTTTTTTTTCCCAACGCCGGGAACCATAAAGGTGTCAGTTCCTAAGCAACACCTTTTAGGAGACTCAAAGGTGCTGCTTGCTTGGGAAATCCAGCAACTAACATGTTTTTTGTAGTAGTAATATTTTTGTTTCATATGGGGAATTTATGTTAATTGGAATATTTTCCAAGATTCAAAAAGA]
consensusID : consensus_12230#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[ATGGACTGAAGGAGTAGAAAGTTTTGAGAACCAAGGGAATTAAGGAGAAGAATCGAGGAAGAAGAAGAGGCCATGGTTGTGTACGAGCAGGATCCGGATGTTCTCCGATGGAGCCTTCACCTTCTTCTTCCACCCGCCGCTGCCCTACACTACCAACAACGCACCAGCAGCGTCGACTGCGATGAGATGATCGCCCACGCCCTCCAGGAGGAGCTTTCCTACGCCCAATCCCAATCCCTATCCTCCTCCATCCTCCATCTCCCCCCCTCTGCTCCTCCACTAAAGGAAGACGAACAAGATGATGCGCCACCACCACCACCCCCCTTTAGTTCTTGTTCAACCCCTGCAGATTATACTAATACTAATAATCATAATGCCCATGACTGCTTAATCGAGTTTGTCGATGATTTCTCTGCTCTAGATGGCCAAGTTGGCAAAAGATTACACGACATGATTCCCATTCCTCATGTTCCAAAAACTAACGGGGACATTCCTTCTGTTGATGAAGCCTTTTCAGATCACCAAAGACTCCTTCACAGGTTGGAGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAGTTCCGAGCATTGTCCGATCAATTTTACCGCAC]
[+] EMBL CF338150 [ATGGACTGAAGGAGTAGAAAGTTTTGAGAACCAAGGGAATTAAGGAGAAGAATCGAGGAAGAAGAAGAGGCCATGGTTGTGTACGAGCAGGATCCGGATGTTCTCCGATGGAGCCTTCACCTTCTTCTTCCACCCGCCGCTGCCCTACACTACCAACAACGCACCAGCAGCGTCGACTGCGATGAGATGATCGCCCACGCCCTCCAGGAGGAGCTTTCCTACGCCCAATCCCAATCCCTATCCTCCTCCATCCTCCATCTCCCCCCCTCTGCTCCTCCACTAAAGGAAGACGAACAAGATGATGCGCCACCACCACCACCCCCCTTTAGTTCTTGTTCAACCCCTGCAGATTATACTAATACTAATAATCATAATGCCCATGACTGCTTAATCGAGTTTGTCGATGATTTCTCTGCTCTAGATGGCCAAGTTGGCAAAAGATTACACGACATGATTCCCATTCCTCATGTTCCAAAAACTAACGGGGACATTCCTTCTGTTGATGAAGCCTTTTCAGATCACCAAAGACTCCTTCACAGGTTGGAGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAGTTCCGAGCATTGTCCGATCAATTTTACCGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12230#0 ------------------------------------------CCCCGCCCCGCCCATCTT 18
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 TGTGAATGACCAAGTCATGGATTTCCTAGAACCAGGGATACCG-TGCATCTGCTCCTTGC 59
consensus_12230#2 ------------------------------------GGTATTGCTCCCCCTGGACCTTGN 24
consensus_12230#0 GTCAGATCCTTCTTCATAGTTACGACCAATCCTATCCAATCCAATTGTTTTGAGA---AC 75
consensus_12230#4 ------------------------ATGGA--CTGAAGGAGTAGAAAGTTTTGAGA---AC 31
consensus_12230#3 -------------------------CGGCAAC--AAATAGTGAAACAGCTTGAGTTTTAT 33
consensus_12230#1 TATCAATGTGAAACTCAAGTATCTGCATTGTTTTTTGCAGTATGGTGTAAAGATTTTCAT 119
consensus_12230#2 T-----CGTGTTGCTTTTGTG-CTACTTGATTTTTCTTCCTCTT-TGCCCAACACTCAAA 77
*
consensus_12230#0 CAAGGGAATTAAGGAGAAGAATCGA---GGAAGAAGAAGAGGCCATGGTTGTGTA---CG 129
consensus_12230#4 CAAGGGAATTAAGGAGAAGAATCGA---GGAAGAAGAAGAGGCCATGGTTGTGTA---CG 85
consensus_12230#3 CCGGAAATTTATGCAGGATATGTCC---CTATGGATTATAGGGAATATCTAAAAAAGATG 90
consensus_12230#1 CCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGA 179
consensus_12230#2 CTTCATGATTCTCATAGGTGGT------ATTGTAATGTCCTCCCTTATCATAATACCAGG 131
* * * *
consensus_12230#0 AGCAGGATCCGGATGTTCTCCGATGGAGC---CTTCACCTTCTTCTTCC--ACCCGCCGC 184
consensus_12230#4 AGCAGGATCCGGATGTTCTCCGATGGAGC---CTTCACCTTCTTCTTCC--ACCCGCCGC 140
consensus_12230#3 ATAAAGAACGGGGAGTGGGGTGACCACGTTA-CATTGCAGGTTGCTGCAG-ACTCGTAAG 148
consensus_12230#1 AAGAGGTAACCTTTCTTTTCAAATTATGTTGCTACTGAATTGTATTACTGAAATTAGCAA 239
consensus_12230#2 CCTATACATCTGTTGTGTTCTCGT----TTGAGATTGAGTAGCATTTTGTGAATGACCAA 187
* * * *
consensus_12230#0 TGCCCTACACTACC-AACAACGCACC-AG-CAGCGTCGACTGCGATGAGATGATCGCCCA 241
consensus_12230#4 TGCCCTACACTACC-AACAACGCACC-AG-CAGCGTCGACTGCGATGAGATGATCGCCCA 197
consensus_12230#3 GTGTAAAGATTTTC-ATCCTGGCATC-ATTCAGAGATGCTTGCTGCATTGAAATCCTTCC 206
consensus_12230#1 CTACTTATATTATCCAGTCAAACATAGATGCAGATCTTCATCAGTTGATATGACCCGCCT 299
consensus_12230#2 GT-CATGGATTTCCTAG--AACCAGGGATACCG---TGCATCTGCT--------CCTTGC 233
* * * * ** * * * * *
consensus_12230#0 CGCCCTCCAGGA---------GGAGCTTTCCTACGCCCAA--TCCCAATCC------CTA 284
consensus_12230#4 CGCCCTCCAGGA---------GGAGCTTTCCTACGCCCAA--TCCCAATCC------CTA 240
consensus_12230#3 CATTGTTCAGAAATC-----AGAAAGAGTTATATGCTTGAGTTTCTTGTAC------CCC 255
consensus_12230#1 TATCATTAAGAATCTCTGCATGTAACTTCATTGTTCTTAGTTAGTTTGCATAGTGGATTG 359
consensus_12230#2 TATCAATGTGAAACT---CAAGTATCTGCATTGTTTTTTGCAGTATGGTGTAAAGATTTT 290
* * * * *
consensus_12230#0 TCCTCCTCCAT------CCTCCATCTCCCCCCCT-CTGCTCCTCCACTAAAGGAAGA-CG 336
consensus_12230#4 TCCTCCTCCAT------CCTCCATCTCCCCCCCT-CTGCTCCTCCACTAAAGGAAGA-CG 292
consensus_12230#3 TCCCCCTCCAC------CCTAAGCTTTTCCTGTGGCGGATCCGGTTGTGGCGGCGGATCC 309
consensus_12230#1 TACTTTTTCA--ATAGATGTGTATCTAATGTGTTTCTGTTCATTTTTTCCTTAAAAAACC 417
consensus_12230#2 CATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATC 350
** * * * *
consensus_12230#0 AACA-AGATGATGCGCCACCA-CCACCACCCCCCTTTAGTTCTTGTTCAACCCCTGCAGA 394
consensus_12230#4 AACA-AGATGATGCGCCACCA-CCACCACCCCCCTTTAGTTCTTGTTCAACCCCTGCAGA 350
consensus_12230#3 CGCG-GGTGGATCCGGCAGAGGCCAATTGATTGTTGTTGTTGTTGTTGTTGTTGTGATGA 368
consensus_12230#1 C-----AGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGA 472
consensus_12230#2 AGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGA 410
** * * * * **
consensus_12230#0 TTATACTAATACTAATAATCATAATGCCCATGACTGCTTAATCGAGTTTGTCGAT-GATT 453
consensus_12230#4 TTATACTAATACTAATAATCATAATGCCCATGACTGCTTAATCGAGTTTGTCGAT-GATT 409
consensus_12230#3 TGTTGTTCTTGTTGTTG-TGATGATGACTATGATCGATAGTTCG---TTGTGGATTGATT 424
consensus_12230#1 AGGAGA-GTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCA 531
consensus_12230#2 AGGAGA-GTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCA 469
* * * * * ** * * ** * ***
consensus_12230#0 TCTCTGCTCTAGATGGCCAAGTTGGCAAAAGATTACACGACATGATTCC-CATTCCTCAT 512
consensus_12230#4 TCTCTGCTCTAGATGGCCAAGTTGGCAAAAGATTACACGACATGATTCC-CATTCCTCAT 468
consensus_12230#3 TTGGGGGTGAAGAGGGATGGATGCGCTAGGTGCATCGAGCCCTT-TTTT-TTTTCCCAAC 482
consensus_12230#1 ACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAG 591
consensus_12230#2 ACTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAG 529
* * * * * * ** ** *
consensus_12230#0 GTTCCAAAAACTAACG--GGGACATTCCTTCTGTTGATGAAGCCT--TTTCAGATCACCA 568
consensus_12230#4 GTTCCAAAAACTAACG--GGGACATTCCTTCTGTTGATGAAGCCT--TTTCAGATCACCA 524
consensus_12230#3 GCCGGGAACCATAAAG--GTGTCAGTTCCTAAGC----AACACCT--TTTAGGAGACTCA 534
consensus_12230#1 ATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTAC 651
consensus_12230#2 ATCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTAC 589
* * * * * * * * * * *** **
consensus_12230#0 AAGACTC------CTTCACAGGTT--GGAGCTG-TATGATCTTGCTGAGCTCAAGGTTGA 619
consensus_12230#4 AAGACTC------CTTCACAGGTT--GGAGCTG-TATGATCTTGCTGAGCTCAAGGTTGA 575
consensus_12230#3 AAGGTGCTGCTTGCTTGGGAAATCCAGCAACTAACATGTTTTTTGTAGTAGTAATATTTT 594
consensus_12230#1 ATAACAC-ATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATT 710
consensus_12230#2 ATAACAC-ATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATT 648
* * * * * ** * * * *
consensus_12230#0 AGG---GGATGGCAATTGTCAGTT---CCGAGCATTGTCCGATCAATTTTACCGCACCAC 673
consensus_12230#4 AGG---GGATGGCAATTGTCAGTT---CCGAGCATTGTCCGATCAATTTTACCGCAC--- 626
consensus_12230#3 TGTTTCATATGGGGAATTTATGTTAATTGGAATATTTTCCAA--GATTCAAAAAGA---- 648
consensus_12230#1 GG----ATATTATTGATGTTATATA---GGGTCACTTAGAGTTGGGTTTAGAATAGAGTA 763
consensus_12230#2 GG----ATATTATTGATGTTATATA---GGGTCACTTAGAGTTGGGTTTAAAAAAA---- 697
* ** * * * * * * **
consensus_12230#0 TGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAGCTTGAGTCTTATCCGGAAAT 733
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 GCTGGGTGTGGAGCTATCTAAACCTCTTCTCTGTCTCTAATTTATTTTGCAACATGTTTG 823
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 TTATGCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAGAACGG 793
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 GTTGAAA----------------------------------------------------- 830
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 GGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGTATGGTGTAAAGATTTT 853
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 ------------------------------------------------------------
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 CATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATC 913
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 ------------------------------------------------------------
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 AGAAAGAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGA 973
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 ------------------------------------------------------------
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 AGGAGAGTTACCAGTTATGGAGAACAAAAGGAAAAGGTGGTGGCATTTTTAGATCAGCAA 1033
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 ------------------------------------------------------------
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 CTGGTGTACACTCCATTGGGCTGGGTACACTCCATTTGATTTGATTTGATGTTGGTTAGA 1093
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 ------------------------------------------------------------
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 TCAGTGGCCATTTTGTTGGGGCTATATGTCAGTGTAGGAATGTTGATTTGTGAGTGTACA 1153
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 ------------------------------------------------------------
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 TAACACATTTAGTCAGGAGGAAGAATAGCTGTGACAATAGATGAATGTATCATGTATTGG 1213
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 ------------------------------------------------------------
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 ATATTATTGATGTTATATAGGGTCACTTAGAGTTGGGTTTAGAATAGAGTAGCTGGGTGT 1273
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 ------------------------------------------------------------
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 GGAGCTATCTAAACCTCTTCTCTGTCTCTAATTTATTTTGCAACATGTTTGGTTGAAAAA 1333
consensus_12230#4 ------------------------------------------------------------
consensus_12230#3 ------------------------------------------------------------
consensus_12230#1 ------------------------------------------------------------
consensus_12230#2 ------------------------------------------------------------
consensus_12230#0 AAAGA 1338
consensus_12230#4 -----
consensus_12230#3 -----
consensus_12230#1 -----
consensus_12230#2 -----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||