These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1704 fasta sequence [TATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTAACAATGAAGCAGTTCACTCAAGATTTTTCCCTCTTCAAGTTACCTTTACAGTAGTAGTGATCCTTCTGCTGCAACATCATTGAAAAATCATGACTTCTTTGTTTACCGGATAAGATAAAGTGCATTGTCAGGCCCTGTCAGACTGTTGTCTGACACTTCATAACAAAGCATATGCATCCATTTCCATCACATCTGCAAGCAAAAAGAAAATATGAATATTGCCTCCATGTTGAATTTGAACTCTTGTTATGTCACTTCATCTCTGCATCCGGCTGTCCTCTAAGATTGATGCAAACAAAAGAACAACAAAAATCCTTGAATATTAAGCTCACAAGGTTTTCCCCTGTTCCTGTTCAGGTGGTCTGCCATTGCAACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGGAAAAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTGAACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATAGCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCTTCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCCACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACCGCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAGGGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAAGAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATCGGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGCTGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAGAATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAGCCACCTTTGCTCTAGAGCAGAGTCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATCCATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAGTCTACAACTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGTACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCA] [+] EMBL AK059468 [TATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTAACAATGAAGCAGTTCACTCAAGATTTTTCCCTCTTCAAGTTACCTTTACAGTAGTAGTGATCCTTCTGCTGCAACATCATTGAAAAATCATGACTTCTTTGTTTACCGGATAAGATAAAGTGCATTGTCAGGCCCTGTCAGACTGTTGTCTGACACTTCATAACAAAGCATATGCATCCATTTCCATCACATCTGCAAGCAAAAAGAAAATATGAATATTGCCTCCATGTTGAATTTGAACTCTTGTTATGTCACTTCATCTCTGCATCCGGCTGTCCTCTAAGATTGATGCAAACAAAAGAACAACAAAAATCCTTGAATATTAAGCTCACAAGGTTTTCCCCTGTTCCTGTTCAGGTGGTCTGCCATTGCAACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGGAAAAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTGAACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATAGCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCTTCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCCACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACCGCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAGGGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAAGAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATCGGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGCTGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAGAATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAGCCACCTTTGCTCTAGAGCAGAGTCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATCCATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAGTCTACAACTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGTACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCA] consensusID : consensus_1224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1457 fasta sequence [CATTTATGTCATGATAAGGCATGGAAAATTAGGGCTCATACCTTCATACCATGCTAATGATTTATAGCTTCAACTCGTCTTCCTCCATTCTCCAGCTCTATATATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTGGTCTGCCATTGCAACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGAAAAAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTGAACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATAGCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCTTCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCCACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACCGCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAGGGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAAGAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATCGGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGCTGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAGAATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAGCCACCTTTGCTTTAGAGCAGAGCCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATCCATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAGTCTACGTCTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGTACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCAATTTGTCAAAA] [+] EMBL OSA495796 [CATTTATGTCATGATAAGGCATGGAAAATTAGGGCTCATACCTTCATACCATGCTAATGATTTATAGCTTCAACTCGTCTTCCTCCATTCTCCAGCTCTATATATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTGGTCTGCCATTGCAACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGAAAAAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTGAACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAGTGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATAGCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCTTCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCCACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACCGCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAGGGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAAGAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATCGGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGCTGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAGAATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAGCCACCTTTGCTTTAGAGCAGAGCCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATCCATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAGTCTACGTCTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGTACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCAATTTGTCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1224#0 TATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGATAGCATATTGCACTAC 60 consensus_1224#1 ------------------------------------------------------------ consensus_1224#0 TCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGAAAGGTCCATGGACACC 120 consensus_1224#1 ------------------------------------------------------------ consensus_1224#0 AGAGGAAGACCAGAAGCTGCTTGCATACATTGAGGAGCATGGACATGGCAGCTGGCGAGC 180 consensus_1224#1 ------------------------------------------------------------ consensus_1224#0 ATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGCAGGTTGCGATGGACAAA 240 consensus_1224#1 ------------------------------------------------------------ consensus_1224#0 CTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAAGAAGAGCAGACCATCAT 300 consensus_1224#1 -----------------------------CATTTATGTCATGATAAGGCATGG--AAAAT 29 *** * * * * *** * * ** consensus_1224#0 CCAACTTCATGCTCTTCTTGGAAACAGGTAACAATGAAGCAGTTCACTCAAGATTTTTCC 360 consensus_1224#1 TAGGGCTCATACCTTCATACCATGC---TAATGATTTATAGCTTCAACTCGTCTTCCTCC 86 **** * * * * * *** ** * **** ** *** consensus_1224#0 CTCTTCAAGTTACCTTTACAGTAGTAGTGATCCTTCTGCTGC-----AACATCATTGAAA 415 consensus_1224#1 ATTCTCCAGCTCTATATATCATTCTCCACACCCAGCTGCCAGCTCTAGGCTTCTGCTAGA 146 * ** ** * * ** * * * ** **** * ** * * consensus_1224#0 AATCATGACTTCTTTGTTTACCGGATAAGATAAAGTGCATTGTCAGGCCCTGTCAGACTG 475 consensus_1224#1 TAGCATATTGCACTACTCCAATGGGGCGTTCACCATGCTGTGAGAAGATTGGCCTGAAGA 206 * *** * * * ** * *** ** * * * * ** consensus_1224#0 TTGTCTGACACTTCATAACAAAGCATATGCATCCATTTCCATCACATCTGCAAGCAAAAA 535 consensus_1224#1 AAGGTCCATGGACACCAGAGGAAGACCAGAAGCTGCTTGCAT-ACATTGAGGAGCATGGA 265 * * * * * * * * ** *** **** **** * consensus_1224#0 GAAAATA-----TGAATATTGCCTCCATGT-TGAATTTGAACTCTTGTTATGTCACTTCA 589 consensus_1224#1 CATGGCAGCTGGCGAGCATTGCCTTCAAAAGCCGGTTTGCAGAGGTGCGGCAAGAGTTGC 325 * * ** ******* ** **** * ** * ** consensus_1224#0 TCTCTGCATCCGGCTGTCC-TCTAAGATT-GATGCAAACAAAAGAACAACAAAAATCCTT 647 consensus_1224#1 AGGTTGCGATGGACAAACTACCTGAGACCAGACATCAAGAGAGGAAAATTCAGCTTACAA 385 *** * * * ** *** ** ** * * *** * * * * consensus_1224#0 GAATATTAAGC--TCACAAGGTTTTCCCCTGTTCCTGTT--CAGGTGGTCTGCCATTGCA 703 consensus_1224#1 GAAGAGCAGACCATCATCCAACTTCATGCTCTTCTTGGAAACAGGTGGTCTGCCATTGCA 445 *** * * * *** ** ** *** ** ******************* consensus_1224#0 ACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGGAA 763 consensus_1224#1 ACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGAAA 505 ********************************************************* ** consensus_1224#0 AAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTG 823 consensus_1224#1 AAGAGGTTGGCCAAGATGGGAATTGATCCTGTCACCCACAAAGCCATCAACGGCACTCTG 565 ************************************************************ consensus_1224#0 AACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAG 883 consensus_1224#1 AACAACACGGCGGGAGACAAATCAGCCAAAGTCACAGCCAGTCTCAGCCACATGGCTCAG 625 ************************************************************ consensus_1224#0 TGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATA 943 consensus_1224#1 TGGGAGAGTGCCCGCCTCGAGGCCGAGGCACGGCTTGCTCGAGAATCCAAGATGCGCATA 685 ************************************************************ consensus_1224#0 GCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCT 1003 consensus_1224#1 GCAGCTTCTACACCAAGCAAACTCCATGCACAGTCAACCAACCCACCTGCTTCAACACCT 745 ************************************************************ consensus_1224#0 TCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCC 1063 consensus_1224#1 TCTCCATGCTTCGATGTGTTGAATGCATGGCAGAGTGCAAAGATAGACCTGGAGTCACCC 805 ************************************************************ consensus_1224#0 ACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACC 1123 consensus_1224#1 ACCTCCACACTGACGTTCGCAGGGAGTAATGCTAGCATGCTGCCATTCTCAACAACAACC 865 ************************************************************ consensus_1224#0 GCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAG 1183 consensus_1224#1 GCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAG 925 ************************************************************ consensus_1224#0 GGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAA 1243 consensus_1224#1 GGTGAAGAAAGTGAGTGGAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAA 985 ************************************************************ consensus_1224#0 GAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATC 1303 consensus_1224#1 GAGACAGAAGAACACTTCATTGGCTGTGAGGAGTCATGGTTCCCAGGGACAGCCAATATC 1045 ************************************************************ consensus_1224#0 GGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGC 1363 consensus_1224#1 GGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAATGC 1105 ************************************************************ consensus_1224#0 TGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAG 1423 consensus_1224#1 TGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAG 1165 ************************************************************ consensus_1224#0 AATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAG 1483 consensus_1224#1 AATAAGAACTATTGGAATGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAG 1225 ************************************************************ consensus_1224#0 CCACCTTTGCTCTAGAGCAGAGTCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATC 1543 consensus_1224#1 CCACCTTTGCTTTAGAGCAGAGCCCTCTCCACTTTTTAAGAAAGGCCTTCTGAGCAAATC 1285 *********** ********** ************************************* consensus_1224#0 CATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAG 1603 consensus_1224#1 CATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAAGAG 1345 ************************************************************ consensus_1224#0 TCTACAACTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGT 1663 consensus_1224#1 TCTACGTCTGCTTCCGCAGTTTGCAAATTTTTCCTCCACGCATTTGTGAAATATTAGGGT 1405 ***** ***************************************************** consensus_1224#0 ACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCA----------- 1704 consensus_1224#1 ACCGTGGGCCTGTGGGGATGTAGTAAATAAACCAGATTGCAATTTGTCAAAA 1457 ***************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||