These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 938 fasta sequence [GCGGCTCCCACTCCCACTCCCTCTCCCACTCCTCCCCAAGCGGCGGCGGCGGCGGCCGCCACCGAGCAGCGGCGCGACGAGGGCATCGTTCGCCATGGCGGCCGCGCCGGGGCGAGGCGGCGGCGAGGCGTTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGAGCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACATCGAACTGCTGGACCTGAACTCGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGAAGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTT-AAATAATGCCTACAC-AAATAGC-TTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAATGGATATGCCCTGAATGGCATATTTATCAAAATAAAGGTTTCATCTCTGAATTATGCTAATTAACATACTTGTACTCGAAAACCAATAACCATG] [+] EMBL AK070095 [GCGGCTCCCACTCCCACTCCCTCTCCCACTCCTCCCCAAGCGGCGGCGGCGGCGGCCGCCACCGAGCAGCGGCGCGACGAGGGCATCGTTCGCCATGGCGGCCGCGCCGGGGCGAGGCGGCGGCGAGGCGTTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGAGCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACGTCGAACTGCTGGACCTGAACTCGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGAAGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTT AAATAATGCCTACAC AAATAGC TTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAATGGATATGCCCTGAATGGCATATTTATCAAAATAAAGGTTTCATCTCTGAATTATGCTAATTAACATACTTGTACTCGAAAACCAATAACCATG] [+] EMBL CB967406 [ CGAGGCGGCGGCGAGGCG TCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAA GNCGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGAGCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACATCGAACTGCTGGACCTGAACTCGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGAAGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTT AAATAATGCCTACAC AAATAGC TTGAA ] [+] EMBL BU673806 [ AGGCGGCGGCGAGGCGTT CGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGAGCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACATCGAACTGCTGGACCTGAACTCGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGAAGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAAATAATGCCTACACAAAATAGCTTTGAAGCTCGC ] [+] EMBL CA998199 [ CTGAGGTCTCCTT AAATAATGCCTACAC AAATAGC TTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAATGGATATGCCCTGAATGGCATATTTATCAAAATAAAaaaaa ] [+] EMBL CA998965 [ CTGAGGTCTCCTT AAATAATGCCTACAC AAATAGC TTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT ] consensusID : consensus_12308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 393 fasta sequence [TACCTGCAATTTCTTGTGGTGTTTATCGTTAT-CCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAAT-GGATATGCCCTGAATGGCATATTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU163708 [TACCTGCAATTTCTTGTGGTGTTTATCGTTAT CCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAAT GGATATGCCCTGAATGGCATATTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094344 [TACCTGCAATTTCTTGTGGTGTTTATCGTTAT CCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAAT GGATATGCCCTGAATGGCATATTTATCA ] [+] EMBL AU163713 [TACCTGCAATTTCTTGTGGTGTTTATCGTTAT CCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAATGGGATATGCCCTGAATGG ] [+] EMBL AU058115 [tcCCTGCAATTCCTTGTGGTGTTTACCGGTATCCCNCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGANTTTCTAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATANCTGGCGTGANACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAANTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCACTAGAGCCGGTTGGCCATGATAAAACCTGTATCTGTATGACAGTATGAGTTGCTTAGTGGTGAAT GGATATGCCCTGAATGGCATATTTATCAAAAAAA ] consensusID : consensus_12308#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [CGAGGCGGCGGCGAGGCGTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCCGACGCCATCGTTAACTGCTGCTAATGAGCGACTGCTAGGACGGTGGACGGTGTACGACTGGAGCTATACATCGAACCTGCTGGACCCTGAACCTCGTACGACGGCATGCCGTACAACGTTCCACGACGGTCAACACTCTGGACGTTCGCTTGCCCCACCTGGACGACACGCTACGGACTTACCATCCAGGCA] [+] EMBL CB966251 [CGAGGCGGCGGCGAGGCGTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCCGACGCCATCGTTAACTGCTGCTAATGAGCGACTGCTAGGACGGTGGACGGTGTACGACTGGAGCTATACATCGAACCTGCTGGACCCTGAACCTCGTACGACGGCATGCCGTACAACGTTCCACGACGGTCAACACTCTGGACGTTCGCTTGCCCCACCTGGACGACACGCTACGGACTTACCATCCAGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12308#0 GCGGCTCCCACTCCCACTCCCTCTCCCACTCCTCCCCAAGCGGCGGCGGCGGCGGCCGCC 60 consensus_12308#1 ------------------------------------------------------------ consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 ACCGAGCAGCGGCGCGACGAGGGCATCGTTCGCCATGGCGGCCGCGCCGGGGCGAGGCGG 120 consensus_12308#1 ------------------------------------------------------------ consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 CGGCGAGGCGTTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGG 180 consensus_12308#1 ------------------------------------------------------------ consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 CGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCGTTAATGCTGCTAATGA 240 consensus_12308#1 ------------------------------------------------------------ consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 GCGAATGCTAGGAGGTGGAGGTGTAGATGGAGCTATACATCGAACTGCTGGACCTGAACT 300 consensus_12308#1 ------------------------------------------------------------ consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 CGTAGAGGCATGCCGTAAAGTTCCAGAGGTCAAATCTGGAGTTCGCTGCCCCACTGGAGA 360 consensus_12308#1 ------------------------------------------------------------ consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 AGCTAGGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCC 420 consensus_12308#1 ------------------------------------------------------------ consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 CATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACAAATAGCTT 480 consensus_12308#1 ------------------------------------------------------------ consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 GAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGT 540 consensus_12308#1 --------------------------------------TACCTGCAATTTCTTGTGGTGT 22 consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 TTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTC 600 consensus_12308#1 TTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTC 82 consensus_12308#2 ------------------------------------------------------------ consensus_12308#0 TAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCG 660 consensus_12308#1 TAATGATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCG 142 consensus_12308#2 ---------CGAGGCGGCGGCGAGGCGTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGC 51 * * ** ** ** * * * * * consensus_12308#0 TGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGC 720 consensus_12308#1 TGAGACTGCCAAGGAATTTCTGTCACAATTTGAGAAATGAATTGTGAACTGTGATGAGGC 202 consensus_12308#2 TCAAGCTGCAGAAGGGCGAC-ATCACCCTCTGGTCCGTCGACGGCGCCACCCGACGCCA- 109 * * **** * * * **** * ** * * * * ** * consensus_12308#0 TTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCA 780 consensus_12308#1 TTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCGTCGTTAATATGAGCA 262 consensus_12308#2 TCGTTAACTGCTGCTAATGAGCGACTGCTAGGACGGTGGACGGTGT--ACGACTGGAGCT 167 * * *** ** * * * * * * * ** * * ** * **** consensus_12308#0 CTAGAGCCGGTTGGCCATGATAAAACCTGTATCT-GTATGACAGTATGAGTTGCTTAGTG 839 consensus_12308#1 CTAGAGCCGGTTGGCCATGATAAAACCTGTATCT-GTATGACAGTATGAGTTGCTTAGTG 321 consensus_12308#2 ATACA-----TCGAACCTGCTGGACCCTGAACCTCGTACGACGGCATGCCGTACAACGTT 222 ** * * * * ** * * **** * ** *** *** * *** * * ** consensus_12308#0 GTGAATGGAT--ATGCCCTGAATGGCATATTTATCAAAATAAAGGTTTCATCTCTGAATT 897 consensus_12308#1 GTGAATGGAT--ATGCCCTGAATGGCATATTTATCAAAAAAAAAAAAAAAAAAAAAAAAA 379 consensus_12308#2 CCACGACGGTCAACACTCTGGACG-TTCGCTTGCCCCACCTGGACGACACGCTACGGACT 281 * * * * *** * * ** * * * consensus_12308#0 ATGCTAATTAACATACTTGTACTCGAAAACCAATAACCATG 938 consensus_12308#1 AAAAAAAAAAAAAA--------------------------- 393 consensus_12308#2 TACCATCCAGGCA---------------------------- 294 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||