Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12313 cluster # 12313       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12313#0 length = 1094 sequences # 5  
consensus_12313#1 length = 949 sequences # 4  
consensus_12313#2 length = 439 sequences # 1  

consensusID : consensus_12313#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1094
fasta sequence
                              [AGATGGAATCTGTGCTAGTACGGATGAAAAGCAATCAATGTCGTCCAGATGTAATCACATTCAACATACTCATAGATTCTTACGGGCGAAAGCAGGCATTCGATAAGATGGAGCAGGTGTTCAAGAGCTTACTACGATCAAAGGAGAAGCCTACACACCCAACTTTCAATTCCATGATAACCAACTACGGGAAAGCGAGACTCAGGGAGAAAGCAGAGTGTGTGCTTGATAAGATGACTGAAATGGGATTCAAACCGAACTATGTGACACAAGAATGTCTAATCATGATGTATGCATATTGTGATTGTGTCTCAAGGGCCAGACAGATATTCGATGAGCTTGTGAGCTCACAAAATAATGTACACCTGTCATCAGTGAACGCAATGCTTGATGCGTACTGCATGAACGGCTTGCCCATGGAAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTGTGCCCAGTGCTTCCACATACAAATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGAAGCTTATTCAGAAGTTGCTCAAACGGATGAACTCACAGGGTATTGTTCCAAATAAAAAGTTCTTCTTGGATGCTTTGGAGGCATTTGGCAACACTGACAAGAAACCCC-GGACGGTACCCAGCAAAAACTCTGCAAGCAAGCCAGAT-GTGGAGTCCGCAAACAATTCTGGAACTGACACTTCAAGCAAGCCAAATTTAAGCGTTTGGCAAGTTGCTGCGTGATGGGGCGGTCAGTTAGTTCTTACAAGCTCATACTCTGCGTTGCCTGACAGCACGGAGAATGCAATTAATTTATCTCTAAAACTGTC-TATAGCAGTA-TCTTTGGAGATACGAGCGATTGATTGGCTC-ATAACGCAGTTTTCTTTATGGGAATGCTGAGATCTTTTGTGCGTCGGCTAATGCTGCTTGTAGTCTTGTAGATTTCATAGTTGTGTTGTAAAATCAGCATAGGGGTTTCTTTTTTTTCCTTCTTTTTTGTTCAGCTCCTCTTTCGTATAGCTGCAAGCCTGCAATTCTGTCTGTCAGTAACCTTGAGGTTTCTGAAGTATCGCTTCTCAAAAAAAAAAAAAAAAA]

[+] EMBL CA767129             [AGATGGAATCTGTGCTAGTACGGATGAAAAGCAATCAATGTCGTCCAGATGTAATCACATTCAACATACTCATAGATTCTTACGGGCGAAAGCAGGCATTCGATAAGATGGAGCAGGTGTTCAAGAGCTTACTACGATCAAAGGAGAAGCCTACACACCCAACTTTCAATTCCATGATAACCAACTACGGGAAAGCGAGACTCAGGGAGAAAGCAGAGTGTGTGCTTGATAAGATGACTGAAATGGGATTCAAACCGAACTATGTGACACAAGAATGTCTAATCATGATGTATGCATATTGTGATTGTGTCTCAAGGGCCAGACAGATATTCGATGAGCTTGTGAGCTCACAAAATAATGTACACCTGTCATCAGTGAACGCAATGCTTGATGCGTACTGCATGAACGGCTTGCCCATGGAAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTGTGCCCAGTGCTTCCACATACAAATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGAAGCTTATTCAGAAGTTGCTCAAACGGATGAACTCACAGGGTATTGTTCCAAATAAAAAGTTCTTCTTGGATGCTTTGGAGGCATTTGGCAACACTGACAAGAAACCCCGGGACGGTACCCAGCGAAAACTCTGCAAGCAAGCCAGATGGNGGAGTCCGCAAACAATTCTGGNACTGACACTTCAAGCAAGCC AATTTAAGCGNTTGGCAAGTTGCTGCGTGATGGGACGGTCAGTTAGTTCTT CAAGCTCATCCTCTGNGNTGNCTGACAGCACGGGGAATGCAATTAA TTATCTNTTAAACTGNCTTATAGCAGTATTNTTTGGAGATCCCAGCGATTGATTGGCTCAANAACGCAGTTTTNTTTATGGG                                                                                                                                                                                                           ]
[+] EMBL CF308275             [                                                                                                     GATAAGATGGAGCAGGTGTTCAAGAGCTTACTACTATCAAAGGAGAAGCCTACACACCCAACTTTCAATTCCATGATAACCAACTACGGGAAGGCGAGACTCAGGGAGAAAGCAGAGTGTGTGCTTGATAAGATGACTGAAATGGGATTCAAACCGAACTATGTGACACAAGAATGTCTAATCATGATGTATGCATATTGTGATTGTGTCTCAAGGGCCAGACAGATATTCGATGAGCTTGTGAGCTCACAAAATAATGTACACCTGTCATCAGTGAACGCAATGCTTGATGCGTACTGCATGAACGGCTTGCCCATGGAAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTGTGCCCAGTGCTTCCACATACAAATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGAAGCTTATTCAGAAGTTGCTCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK059134             [                                                                                                               AGCAGGTGTTCAAGAGC TACTACGATCAAAGGAGAAGCCTACACACCCAACTTTCAATTCCATGATAACCAACTACGGGAAAGCGAGACTCAGGGAGAAAGCAGAGTGTGTGCTTGATAAGATGACTGAAATGGGATTCAAACCGAACTATGTGACACAAGAATGTCTAATCATGATGTATGCATATTGTGATTGTGTCTCAAGGGCCAGACAGATATTCGATGAGCTTGTGAGCTCACAAAATAATGTACACCTGTCATCAGTGAACGCAATGCTTGATGCGTACTGCATGAACGGCTTGCCCATGGAAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTGTGCCCAGTGCTTCCACATACAAATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGAAGCTTATTCAGAAGTTGCTCAAACGGATGAACTCACAGGGTATTGTTCCAAATAAAAAGTTCTTCTTGGATGCTTTGGAGGCATTTGGCAACACTGACAAGAAACCCC GGACGGTACCCAGCAAAAACTCTGCAAGCAAGCCAGAT GTGGAGTCCGCAAACAATTCTGGAACTGACACTTCAAGCAAGCCAAATTTAAGCGTTTGGCAAGTTGCTGCGTGATGGGGCGGTCAGTTAGTTCTTACAAGCTCACACTCTGCGTTGCCTGACAGCACGGAGAATGCAATTAATTTATCTCTAAAACTGTC TATAGCAGTA TCTTTGGAGATACGAGCGATTGATTGGCTC ATAACGCAGTTTTCTTTATGTGAATGCTGAGATCTTTTGTGCGTCGGCTAATGCTGCTTGTAGTCTTGTAGATTTCATAGTTGTGTTGTAAAATCAGCATAGGGGTTTCTTTTTTTTCCTTCTTTTTTGTTCAGCTCCTCTTTCGTATAGCTGCAAGCCTGCAATTCTGTCTGTCAGTAACCTTGAGGTTTCTGAAGTATCGCT                     ]
[-] EMBL CB621119             [                                                                                                                                                                                                                                                                                                                                              TGAGCTTGTGAGCTCACAAAATAATGTACACCTGTCATCAGTGAACGCAATGCTTGATGCGTACTGCATGAACGGCTTGCCCATGGAAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTGTGCCCAGTGCTTCCACATACAAATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGAAGCTTATTCAGAAGTTGCTCAAACGGATGAACTCCCAGGGTATTGTTCCAAATAAAAAGTTCTTCTTGGATGCTTTGGAGGCATTTGGCAACACTGACAAGAAACCCC GGACGGTACCCAGCAAAAACTCTGCAAGCAAGCCAGAT GTGGAGTCCGCAAACAATTCTGGAACTGACACTTCAAGCAAGCCAAATTTAAGCGTTTGGCAAGTTGCTGCGTGATGGGGCGGTCAGTTAGTTCTTACAAGCTCATACTCTGCGTTGCCTGACAGCCCGGAGAATGCAATTAATTTATCTCTAAAACTGTC TATAGCAGTA TCTTTGGAGATACGAGCGATTGATTGGCTC ATAACGCAGTTTTCTTTATGGGAATGCTGAGATCTTTTGTGCTTCGCCTAATCCTcc                                                                                                                                                                        ]
[-] EMBL CA762340             [                                                                                                                                                                                                                                                                                                                                                                                                                   GAACGGCTTGCCCATGGAAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTGTGCCCAGTGCTTCCACATACAAAGTGCTTTACAAGGCCTACACCAAAGCAAACGCCAAGAAGCTTATTCAGAAGTTGCTCAAACGGATGAACTCACAGGGTATTGTTCCAAGTAAAAAGTTCTTCTTGGATGCTTTGGAGGCATTTGGCAACACTGACAAGAAACCCC GGACGGTACCCAGCAAAAACTTTGCAAGCAAGCCAGAT GTGGAGTCCGCAAACAATTCTGGAACTGACACTTCAAGCAAGCCAAATTTAAGCGTTTGGCAAGTTGTTGCGTGATGGGGCGGTCAGTTAGTTCTTACAAGCTCATACTTTGCGTTGCCTGACAGCGCGGAGAATGCAATTAATTTATCTTTAAAACGGTC TATAGCAGTA TCTTTGGAGATACGAGCGATTGATTGGCTC ATAACGCAGTTTTCTTTATGTGAATGCTGAGATCTTTTGTGCGTCGGCTAATGCTGCTTGTAGTCTTGTAGATTTCATAGTTGCGTTGTAAAATCAGCATAGGGGTTTC  TTTTTTCCTTCTTTTTTGTTCAGCTCCTCTTTTGGATAGCTGCAAGCCTGCAATTCTGTCTGTCAGTAACCCTGAGGTTTCTGAAGTTTCGCTTCTCAAAAAAAAAAAAAAAAA]


>consensus_12313#0 AGATGGAATCTGTGCTAGTACGGATGAAAAGCAATCAATGTCGTCCAGATGTAATCACAT TCAACATACTCATAGATTCTTACGGGCGAAAGCAGGCATTCGATAAGATGGAGCAGGTGT TCAAGAGCTTACTACGATCAAAGGAGAAGCCTACACACCCAACTTTCAATTCCATGATAA CCAACTACGGGAAAGCGAGACTCAGGGAGAAAGCAGAGTGTGTGCTTGATAAGATGACTG AAATGGGATTCAAACCGAACTATGTGACACAAGAATGTCTAATCATGATGTATGCATATT GTGATTGTGTCTCAAGGGCCAGACAGATATTCGATGAGCTTGTGAGCTCACAAAATAATG TACACCTGTCATCAGTGAACGCAATGCTTGATGCGTACTGCATGAACGGCTTGCCCATGG AAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTGTGCCCAGTGCTTCCACAT ACAAATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGAAGCTTATTCAGAAGTTGC TCAAACGGATGAACTCACAGGGTATTGTTCCAAATAAAAAGTTCTTCTTGGATGCTTTGG AGGCATTTGGCAACACTGACAAGAAACCCCGGACGGTACCCAGCAAAAACTCTGCAAGCA AGCCAGATGTGGAGTCCGCAAACAATTCTGGAACTGACACTTCAAGCAAGCCAAATTTAA GCGTTTGGCAAGTTGCTGCGTGATGGGGCGGTCAGTTAGTTCTTACAAGCTCATACTCTG CGTTGCCTGACAGCACGGAGAATGCAATTAATTTATCTCTAAAACTGTCTATAGCAGTAT CTTTGGAGATACGAGCGATTGATTGGCTCATAACGCAGTTTTCTTTATGGGAATGCTGAG ATCTTTTGTGCGTCGGCTAATGCTGCTTGTAGTCTTGTAGATTTCATAGTTGTGTTGTAA AATCAGCATAGGGGTTTCTTTTTTTTCCTTCTTTTTTGTTCAGCTCCTCTTTCGTATAGC TGCAAGCCTGCAATTCTGTCTGTCAGTAACCTTGAGGTTTCTGAAGTATCGCTTCTCAAA AAAAAAAAAAAAAA



consensusID : consensus_12313#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 949
fasta sequence
                              [CCCTCCCTCCCGACGGCAGTTGCCGCCACTCGCCGCCGGCCAACCCTATCCAATGCAAACCTAAGGGGCCTCTCCTTTTGACCTAACCCGATGCTCGCCTACCCTACCACATCGAGCCCGTGGCCGCCGCGCCACCACGGCGCCGCCGCTGCCCCCGCCGCGCGGCGGCACATGGCGGCTGCGGCAGCCAGGGGAAAGAGGCGGGGCGCGGGTGCCGCGGCGGCGGAAGGGGCGGACGAGGCCGCCGAGGCGGCGGACCTGGTGCGGTTCTTCCTCCGGAGGACGAGCGGCGGCAAGGAGCGGCTCGTGGCCGTGCTTGACCGCCACGTGAAGGTGGTCCGCACCGAGCACTGCTTCCTCCTCTTCGAGGAGCTCGGCCGCCGCGACGGCTGGCTCCAGTGTCTCGAGGTTTTCAGATGGATGCAGAAACAAAGGTGGTATGTTGCTGATAACGGCATATATTCGAAGCTGATATCTGTGATGGGAAGGAAAGGCCAGATACGGATGGCAATGTGGCTGTTCTCTCAGATGCGGAACAGTGGGTGTAGGCCGGACACTTCAGTGTATAATTCTCTTATCGGCGCACATTTGCATTCGCGAGACAAGAGCAAGGCTTTGGCAAAAGCTCTCGGCTATTTTGAAAAGATGAAGACTATTGATAGGTGCCAACCAAATATTGTGACATATAACATTCTCCTAAGAGCTTTTGCTCAGGCTGGTGACACAAAACAGCTAGACATCTTGTTTAAAGATCTGGATGAGAGCCCTGTCTCTCCTGATATCTATACCTACCATGGAGTCATGGACGCTTACCGGAAGAATGGCATGATCACACAGATGGAATCTGTGCTAGTACGGATGAAAAGCAAACAATGTCGGCCAGATGTAATCACATTAACATACTCATAGATTCTTACCGGCCGAAACACGCATCCTATAGTATGAGCCA]

[+] EMBL CB621118             [CCCTCCCTCCCGACGGCAGTTGCCGCCACTCGCCGCCGGCCAACCCTATCCAATGCAAACCTAAGGGGCCTCTCCTTTTGACCTAACCCGATGCTCGCCTACCCTACCACGTCGAGCCCGTGGCCGCCGCGCCACCACGGCGCCGCCGCTGCCCCCGCCGCGCGGCGGCACATGGCGGCTGCGGCAGCCAGGGGAAAGAGGCGGGGCGCGGGTGCCGCGGCGGCGGAAGGGGCGGACGAGGCCGCCGAGGCGGCGGACCTGGTGCGGTTCTTCCTCCGGAGGACGAGCGGCGGCAAGGAGCGGCTCGTGGCCGTGCTTGACCGCCACGTGAAGGTGGTCCGCACCGAGCACTGCTTCCTCCTCTTCGAGGAGCTCGGCCGCCGCGACGGCTGGCTCCAGTGTCTCGAGGTTTTCAGATGGATGCAGAAACAAAGGTGGTATGTTGCTGATAACGGCATATATTCGAAGCTGATATCTGTGATGGGAAGGAAAGGCCAGATACGGATGGCAATGTGGCTGTTCTCTCAGATGCGGAACAGTGGGTGTAGGCCGGACACTTCAGTGTATAATTCTCTTATCGGCGCACATTTGCATTCGCGAGACAAGAGCAAGGCTTTGGCAAAAGCTCTCGGCTATTTTGAAAAGATGAAGACTATTGATAGGTGCCAACCAAATATTGTGACATATAACATTCTCCTAAGAGCTTTTGCTCAGGCTGGTGACA                                                                                                                                                                                                                                 ]
[+] EMBL CB640087             [                                        CAACCCTATCCAATGCAAACCTAAGGGGCCTCTCCTTTTGACCTAACCCGATGCTCGCCTACCCTACCACATCGAGCCCGTGGCCGCCGCGCCACCACGGCGCCGCCGCTGCCCCCGCCGCGCGGCGGCACATGGCGGCTGCGGCAGCCAGGGGAAAGAGGCGGGGCGCGGGTGCCGCGGCGGCGGAAGGGGCGGACGAGGCCGCCGAGGCGGCGGACCTGGTGCGGTTCTTCCTCCGGAGGACGAGCGGCGGCAAGGAGCGGCTCGTGGCCGTGCTTGACCGCCACGTGAAGGTGGTCCGCACCGAGCACTGCTTCCTCCTCTTCGAGGAGCTCGGCCGCCGCGACGGCTGGCTCCAGTGTCTCGAGGTGTTCAGATGGATGCAGAAACAAAGGTGGTATGTTGCTGATAACGGCATATATTCGAAGCTGATATCTGTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB652048             [                                              TATCCACCGCAAACCTAAGGGGCCTCTCCTTTTGACCTAACCCGATGCTCGCCTACCCTACCACATCGAGCCCGTGGGCGCCGCGCCACCACGGCGCCGCCGCTGCCCCCGCCGCGCGGCGGCACATGGCAGCTGCGGCAGCCAGGGGAAAGAGGCGGGGCGCGGGTGCCGCGGCGGCGGAAGGGGCGGACGAGGCCGCCGAGGCGGCGGACCTGGTGCGGTTCTTCCTCCGGAGGACGAGCGGCGGCAAGGAGCGGCTCGTGGCCGTGCTTGACCGCCACGTGAAGGTGGTCCGCACCGAGCACTGCTTCCTCCTCTTCTAGGAGCTCGGCCGCCGCGACGGCTGGCTCCAGTGTCTCTAGGTTTTCAGATGGATGCATAAACAAAGGAGGTATGTTGCTGATAACGGCATATATTCTAAGCTGATATCTGTGATGGGAAGGAAAGGCCAGATACGGATGGCAATGTGGCTGTTCTCTCAGATGCGGAACAGTGGGTGTACGCCGGACACTTCAGCGTATAATTCTCTTATCGGCACACATTTGCATTCGCGAGACAAGAGCAAGGCTTTGGCGAAAGCTCTCGGCTATTTTGAAAAGATGAAGACTATTGATAGGTGCCAACCAAATATTGTGACATATAACATTCTCCTAAGAGCTTTTGCTCAGGCTGGTGACACAAAACAGCTAGACATCTTGTTTAAAGATCTGGATGAGAGCCCTGTCTCTCCTGAT                                                                                                                                                                         ]
[+] EMBL BF430701             [                                                                                                                                                                                                                                                       AGGCGGCGGACCTGGTGCGGTTCTTCCTCCGGAGGACGAGCGGCGGCAAGGAGCGGCTCGTGGCCGTGCTTGACCGCCACGTGAAGGTGGTCCGCACCGAGCACTGCTTCCTCCTCTTCGAGGAGCTCGGCCGCCGCGACGGCTGGCTCCAGTGTCTCGAGGTTTTCAGATGGATGCAGAAACAAAGGTGGTATGTTGCTGATAACGGCATATATTCGAAGCTGATATCTGTGATGGGAAGGAAAGGCCAGATACGGATGGCAATGTGGCTGTTCTCTCAGATGCGGAACAGTGGGTGTAGGCCGGACACTTCAGTGTATAATTCTCTTATCGGCGCACATTTGCATTCGCGAGACAAGAGCAAGGCTTTGGCAAAAGCTCTCGGCTATTTTGAAAAGATGAAGACTATTGATAGGTGCCAACCAAATATTGTGACATATAACATTCTCCTAAGAGCTTTTGCTCAGGCTGGTGACACAAAACAGCTAGACATCTTGTTT AGGATCTGGATGAAAGCCCTGTCTCTCCTGATATCTATACCTACCATGGAGTCATGGACGCTTACCGGAAGAATGGCATGATCACACAGATGGAATCTGTGCTAGTACGGATGAAAAGCAAACAATGTCGGCCAGATGTAATCACATTAACATACTCATAGATTCTTACCGGCCGAAACACGCATCCTATAGTATGAGCCA]


>consensus_12313#1 CCCTCCCTCCCGACGGCAGTTGCCGCCACTCGCCGCCGGCCAACCCTATCCAATGCAAAC CTAAGGGGCCTCTCCTTTTGACCTAACCCGATGCTCGCCTACCCTACCACATCGAGCCCG TGGCCGCCGCGCCACCACGGCGCCGCCGCTGCCCCCGCCGCGCGGCGGCACATGGCGGCT GCGGCAGCCAGGGGAAAGAGGCGGGGCGCGGGTGCCGCGGCGGCGGAAGGGGCGGACGAG GCCGCCGAGGCGGCGGACCTGGTGCGGTTCTTCCTCCGGAGGACGAGCGGCGGCAAGGAG CGGCTCGTGGCCGTGCTTGACCGCCACGTGAAGGTGGTCCGCACCGAGCACTGCTTCCTC CTCTTCGAGGAGCTCGGCCGCCGCGACGGCTGGCTCCAGTGTCTCGAGGTTTTCAGATGG ATGCAGAAACAAAGGTGGTATGTTGCTGATAACGGCATATATTCGAAGCTGATATCTGTG ATGGGAAGGAAAGGCCAGATACGGATGGCAATGTGGCTGTTCTCTCAGATGCGGAACAGT GGGTGTAGGCCGGACACTTCAGTGTATAATTCTCTTATCGGCGCACATTTGCATTCGCGA GACAAGAGCAAGGCTTTGGCAAAAGCTCTCGGCTATTTTGAAAAGATGAAGACTATTGAT AGGTGCCAACCAAATATTGTGACATATAACATTCTCCTAAGAGCTTTTGCTCAGGCTGGT GACACAAAACAGCTAGACATCTTGTTTAAAGATCTGGATGAGAGCCCTGTCTCTCCTGAT ATCTATACCTACCATGGAGTCATGGACGCTTACCGGAAGAATGGCATGATCACACAGATG GAATCTGTGCTAGTACGGATGAAAAGCAAACAATGTCGGCCAGATGTAATCACATTAACA TACTCATAGATTCTTACCGGCCGAAACACGCATCCTATAGTATGAGCCA



consensusID : consensus_12313#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence
                              [AATTTTGCAAGCAAGCCAAATGTGGAGTCCCCAAACAATTTTGGAATTGACCTTTCAAGCAAGCCAAATTTAAGCGTTTGGCAAGTTGTTGCGTAATGGGGCGGTCAGTTAGTTTTTACAAGTTCATATTTTGGGTTGCCTGCCAGCCCGGAAAATGCAATTAATTTATTTTTAAAACTGTTTATAGCAGTATTTTTGGAAATACGAGCGATTGATTGGTTCAAAACCCAGTTTTTTTTATGTGAATGTTGAGATTTTTTGGGGGTGGGCTAATGCGGCTTGAAGTTTTGTAGATTTCAAAGTTGGGTTGTAAAATCAGCAAAGGGGTTTTTTTTTTTCCCTTTTTTTTTGTTCAGCCCCTTTTTGGAAAAGCTGCAAGCCTGCAATTTTGTTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF308276             [AATTTTGCAAGCAAGCCAAATGTGGAGTCCCCAAACAATTTTGGAATTGACCTTTCAAGCAAGCCAAATTTAAGCGTTTGGCAAGTTGTTGCGTAATGGGGCGGTCAGTTAGTTTTTACAAGTTCATATTTTGGGTTGCCTGCCAGCCCGGAAAATGCAATTAATTTATTTTTAAAACTGTTTATAGCAGTATTTTTGGAAATACGAGCGATTGATTGGTTCAAAACCCAGTTTTTTTTATGTGAATGTTGAGATTTTTTGGGGGTGGGCTAATGCGGCTTGAAGTTTTGTAGATTTCAAAGTTGGGTTGTAAAATCAGCAAAGGGGTTTTTTTTTTTCCCTTTTTTTTTGTTCAGCCCCTTTTTGGAAAAGCTGCAAGCCTGCAATTTTGTTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12313#2 AATTTTGCAAGCAAGCCAAATGTGGAGTCCCCAAACAATTTTGGAATTGACCTTTCAAGC AAGCCAAATTTAAGCGTTTGGCAAGTTGTTGCGTAATGGGGCGGTCAGTTAGTTTTTACA AGTTCATATTTTGGGTTGCCTGCCAGCCCGGAAAATGCAATTAATTTATTTTTAAAACTG TTTATAGCAGTATTTTTGGAAATACGAGCGATTGATTGGTTCAAAACCCAGTTTTTTTTA TGTGAATGTTGAGATTTTTTGGGGGTGGGCTAATGCGGCTTGAAGTTTTGTAGATTTCAA AGTTGGGTTGTAAAATCAGCAAAGGGGTTTTTTTTTTTCCCTTTTTTTTTGTTCAGCCCC TTTTTGGAAAAGCTGCAAGCCTGCAATTTTGTTTGTCAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12313#0      AGATGGAATCTGTGCTAGTACGGATGAAAAGCAATCAATGTCGTCCAGATGTAATCACAT 60
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      ------------------------------------------------------------
                                                                                   

consensus_12313#0      TCAACATACTCATAGATTCTTACGGGCGAAAGCAGGCATTCGATAAGATGGAGCAGGTGT 120
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      ------------------------------------------------------------
                                                                                   

consensus_12313#0      TCAAGAGCTTACTACGATCAAAGGAGAAGCCTACACAC-CCAACTTTCAATTCCATGATA 179
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      -------CCCTCCCTCCCGACGGCAGTTGCCGCCACTCGCCGCCGGCCAACCCTATCCAA 53
                                                                                   

consensus_12313#0      ACCAACTACGGGAAAGCGAGACTCAGGGAGAAAGCAGAGTGTGTGCTTGATAAGATGACT 239
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      TGCAAACCTAAGGGGCCTCTCCTTTTGACCTAACCCGATGCTCGCCTACCCTACCACATC 113
                                                                                   

consensus_12313#0      GAAATGGGATTCAAACCGAACTATGTGACACAAGAATGTCTAATCATGATGTATGCATAT 299
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      GAGCCCGTGGCCGCCGCGCCACCACGGCGCCGCCGCTGCCCCCGCCGCGCGGCGGCACAT 173
                                                                                   

consensus_12313#0      TGTGATTGTGTCTCAAGGGCCAGACAGATATTCGATGAGCTTGTGAGCTCACAAAATAAT 359
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      GGCGGCTGCGGCAGCCAGG--GGAAAGAGGCGGGGCGCGGGTGCCGCGGCGGCGGAAGGG 231
                                                                                   

consensus_12313#0      GTACACCTGTCATCAGTGAACGCAATGCTTGATGCGTACTGCATGAACGGCTTGCCCATG 419
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      GCGGACGAGGCCGCCGAGGCGGCGGACCTGGTGCGGTTCTTCCTCCGGAGGACGAGCGGC 291
                                                                                   

consensus_12313#0      GAAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTGTGCCCAGTGCTTCCACA 479
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      GGCAAGGAGCGGCTCGTGGCCGTGCTTGACCGCCACGTGAAGGTGGTCCGCACCGAGCAC 351
                                                                                   

consensus_12313#0      TACAAATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGAAGCTTATTCAGAAGTTG 539
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      TGCTTCCTCCTCTTCGAGGAGCTCGGCCGCCGCGACGGCTGGCTCCAGTGTCTCGAGGTT 411
                                                                                   

consensus_12313#0      CTCAAACGGATGAACTCACA---GGGTATTGTTCCAAATAAAAAGTTCTTCTTGGATGCT 596
consensus_12313#2      ------------------------------------------------------------
consensus_12313#1      TTCAGATGGATGCAGAAACAAAGGTGGTATGTTGCTGATAACGGCATATATTCGAAGCTG 471
                                                                                   

consensus_12313#0      TTGGAGGCATTTGGCAACACTGACAAGAAACCCCGGACGGTACCCAGCAAAAACTCTGCA 656
consensus_12313#2      ---------------------------------------------------AATTTTGCA 9
consensus_12313#1      ATATCTGTGATGGGAAGGAAAGGCCAGATACGGATGGCAATG--TGGCTGTTCTCTCAGA 529
                                                                                  *

consensus_12313#0      AGCAAGCCAG-ATGTGGAGTCCGCAAACAATTCTGGAACTGACACTTCAAGCAAGCCAAA 715
consensus_12313#2      AGCAAGCCAA-ATGTGGAGTCCCCAAACAATTTTGGAATTGACCTTTCAAGCAAGCCAAA 68
consensus_12313#1      TGCGGAACAGTGGGTGTAGGCCG--GACACTTCAGTGTATAATTCTCTTATCGGCGCACA 587
                        **    **    *** ** **    *** **  *    * *   *   * *    ** *

consensus_12313#0      TTTAAG--CGTTTGGCAAGTTGCTGCGTGATGG----GGCGGTCAGTTAGTTCTTACAAG 769
consensus_12313#2      TTTAAG--CGTTTGGCAAGTTGTTGCGTAATGG----GGCGGTCAGTTAGTTTTTACAAG 122
consensus_12313#1      TTTGCATTCGCGAGACAAGA-GCAAGGCTTTGGCAAAAGCTCTCGGCTA-TTTTGAAAAG 645
                       ***     **   * ****  *    *   ***     **  ** * ** ** * * ***

consensus_12313#0      CTCATACTCTGCGTTGCCTGACAGCACGGAGAATGCAAT---TAATTTATCTCTAAAACT 826
consensus_12313#2      TTCATATTTTGGGTTGCCTGCCAGCCCGGAAAATGCAAT---TAATTTATTTTTAAAACT 179
consensus_12313#1      ATGAAGACTATTGATAGGTGCCAAC-CAAATATTGTGACATATAACATTCTCCTAAGAGC 704
                        * *        * *   ** ** * *  * * **  *    ***  *     *** *  

consensus_12313#0      GTCTATAGCAGTATCTTTGGAGATACGAGCGATTGATTGGCTCATAACGCAGTTTTCTTT 886
consensus_12313#2      GTTTATAGCAGTATTTTTGGAAATACGAGCGATTGATTGGTTCAAAACCCAGTTTTTTTT 239
consensus_12313#1      TTTTGCTCAGGC-----TGGTGACACAA--AACAGCTAGACATCTTGTTTAAAGATCTGG 757
                        * *      *      ***  * ** *   *  * * *           *    * *  

consensus_12313#0      ATGGGAATGCTGAGATCTTTTGTGCGTCGGCTAATGCTGCTTGTAGTCTTGTAGATTTCA 946
consensus_12313#2      ATGTGAATGTTGAGATTTTTTGGGGGTGGGCTAATGCGGCTTGAAGTTTTGTAGATTTCA 299
consensus_12313#1      ATGAGAGCCCTGTCTCTCCTGATATCTATACCTAC----CATGGAGTCATGGACGCTTAC 813
                       *** **    **       *      *   *  *     * ** ***  ** *   **  

consensus_12313#0      TAGTTGTGTTGTAAAATCAGCATAGGGGTTTCTTTTTTTTCCTTCTTTTTTGTTCAGCTC 1006
consensus_12313#2      AAGTTGGGTTGTAAAATCAGCAAAGGGGTTTTTTTTTTTCCCTTTTTTTTTGTTCAGCCC 359
consensus_12313#1      CGGAAGAATGGCATGATCA-CACAGATGGAATCTGTGCTAGTACGGATGAAAAGCAA--A 870
                         *  *  * * *  **** ** **  *     * *  *        *      **    

consensus_12313#0      CTCTTTCGTATAGCTGCAAGCCTGCAATTCTGTCTGTCAGTAACCTTGAGGTTTCTGAAG 1066
consensus_12313#2      CTTTTTGGAAAAGCTGCAAGCCTGCAATTTTGTTTGTCAAAAAAAAAAAAAAAAAAAAAA 419
consensus_12313#1      CAATGTCGGCCAGATGTAATCACATTAACATACTCATAGATTCTTACCGGCCGAAACACG 930
                       *  * * *   ** ** ** *     *   *     *                    *  

consensus_12313#0      TATCGCTTCTCAAAAAAAAAAAAAAAAA 1094
consensus_12313#2      AA--------AAAAAAAAAAAAAAAAAA 439
consensus_12313#1      CATC-----CTATAGTATGAGCCA---- 949
                        *         * *  *  *   *    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)