These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANATCCGCGAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGCTGTTCGACGCNCGGGGAAGGCCCCCGAGGGGGCCGTTTCCCGGTCCGTCCCCCGGCCGGCACGGGGCGGCCCGCTCTNGCCGCGCGACAAGCTTCGAGCAGTCCGCCGGCAACCGACGGGTTCGGGGGCCGGGACCCCGAGCCCAGCCTNAGAGCCAATCCTTTTTCCGAAGTTANGGATCC] [+] EMBL AU163270 [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANATCCGCGAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGCTGTTCGACGCNCGGGGAAGGCCCCCGAGGGGGCCGTTTCCCGGTCCGTCCCCCGGCCGGCACGGGGCGGCCCGCTCTNGCCGCGCGACAAGCTTCGAGCAGTCCGCCGGCAACCGACGGGTTCGGGGGCCGGGACCCCGAGCCCAGCCTNAGAGCCAATCCTTTTTCCGAAGTTANGGATCC] consensusID : consensus_1237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence [CGACGNNTGGNTTTGGCTACCTTAANANAANCATAGTTACTCCCGCNTANNACCCGCGCTTGGTTGAATTTTTTCACTTTNACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANATCCGCNAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGCTGTTCGACGCCCGGGGAAGGCCCCCG] [+] EMBL AU163206 [CGACGNNTGGNTTTGGCTACCTTAANANAANCATAGTTACTCCCGCNTANNACCCGCGCTTGGTTGAATTTTTTCACTTTNACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANATCCGCNAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGCTGTTCGACGCCCGGGGAAGGCCCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1237#0 -----------------------------------------CCCGCCGTTTACCCGCGCT 19 consensus_1237#1 CGACGNNTGGNTTTGGCTACCTTAANANAANCATAGTTACTCCCGCNTANNACCCGCGCT 60 ***** ********* consensus_1237#0 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANAT 79 consensus_1237#1 TGGTTGAATTTTTTCACTTTNACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANAT 120 *********** ******** *************************************** consensus_1237#0 CCGCGAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTAC 139 consensus_1237#1 CCGCNAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTAC 180 **** ******************************************************* consensus_1237#0 CAGTTCTGAGTCGGCTGTTCGACGCNCGGGGAAGGCCCCCGAGGGGGCCGTTTCCCGGTC 199 consensus_1237#1 CAGTTCTGAGTCGGCTGTTCGACGCCCGGGGAAGGCCCCCG------------------- 221 ************************* *************** consensus_1237#0 CGTCCCCCGGCCGGCACGGGGCGGCCCGCTCTNGCCGCGCGACAAGCTTCGAGCAGTCCG 259 consensus_1237#1 ------------------------------------------------------------ consensus_1237#0 CCGGCAACCGACGGGTTCGGGGGCCGGGACCCCGAGCCCAGCCTNAGAGCCAATCCTTTT 319 consensus_1237#1 ------------------------------------------------------------ consensus_1237#0 TCCGAAGTTANGGATCC 336 consensus_1237#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||