Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12375 cluster # 12375       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12375#0 length = 1641 sequences # 7  
consensus_12375#1 length = 1342 sequences # 2  
consensus_12375#2 length = 792 sequences # 1  

consensusID : consensus_12375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1641
fasta sequence
                              [CCCAATTGTCCCTCCCCCCGCGAATCTTCTCTTCTCTTCTCTTCTCTTCTCCGGTGGCGATCTGAGTGGCCGACCGGCGGCGAGATGGCCTCCGCCGCCGTGACGCTCCCGCGGGTGATGCTGGCGGCGGCCGCGGTGCGGGCGGCGATGCTGGCGCTCGGGGAGTGGCAGGACGCGCACCTCGAGGTGCGGTACACCGACGTCGACTACCTCGTCTTCTCCGACGCCGCGGCGTCCGTCGCCGCGGGCGGGTCCCCCTTCGCCCGCGCCACCTACCGATACTCCCCGCTCCTCGCCTACCTGCTCGTCCCCAACTCTCTCCTCCACCCCACGTGGGGGAAGCTCCTCTTCTCCGCAGCAGATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACAGCACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCACAAGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGATGAATGGTGTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAATATACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCCTGCTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATCCAGTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTAT-GGATGGGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTCT-CTAGGG-ATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACA-AGGTCA-TGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGACA-TGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCATCCTTGCTCTTTTTTTTTTTAACCCTGAGACCCGGCTTGGTTGGTTTTGTACTATTAACTTCTTGTCTTAGGTTGTATGGTAAGTCTGGAAAATGCAGTTGCTTAAAAAAAAAA]

[+] EMBL AK069553             [CCCAATTGTCCCTCCCCCCGCGAATCTTCTCTTCTCTTCTCTTCTCTTCTCCGGTGGCGATCTGAGTGGCCGACCGGCGGCGAGATGGCCTCCGCCGCCGTGACGCTCCCGCGGGTGATGCTGGCGGCGGCCGCGGTGCGGGCGGCGATGCTGGCGCTCGGGGAGTGGCAGGACGCGCACCTCGAGGTGCGGTACACCGACGTCGACTACCTCGTCTTCTCCGACGCCGCGGCGTCCGTCGCCGCGGGCGGGTCCCCCTTCGCCCGCGCCACCTACCGATACTCCCCGCTCCTCGCCTACCTGCTCGTCCCCAACTCTCTCCTCCACCCCACGTGGGGGAAGCTCCTCTTCTCCGCAGCAGATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACAGCACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCACAAGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGATGAATG  GTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAATATACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCCTGCTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATCCAGTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTAT GGATGGGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTCT CTAGGG ATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACA AGGTCA TGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGACA TGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCATCCTTGCTCTTTTTTTTTTTAACCCTGAGACCCGGCTTGGTTGGTTTTGTACTATTAACTTCTTGTCTTAGGTTGTATGGTAAGTCTGGAAAATGCAGTTGCT           ]
[+] EMBL AU225672             [            gCCGCTCGCGAATCTTCTCTTCTCTTCTCTTCTCTTCTCCGGTGGCGATCTGAGTGGCCGACCGGCGGCGAGATGGCCTCCGCCGCCGTGACGCTCCCGCGGGTGATGCTGGCGGCGGCCGCGGTGCGGGCGGCGATGCTGGCGCTCGGGGAGTGGCAGGACGCGCACCTCGAGGTGCGGTACACCGACGTCGACTACCTCGTCTTCTCCGACGCCGCGGCGTCCGTCGCCGCGGGCGGGTCCCCCTTCGCCCGCGCCACCTACCGATACTCCCCGCTCCTCGCCTACCTGCTCGTCCCCAACTCTCTCCTCCACCCCACGTGGGGGAAGCTCCTCTTCTCCGCAGCAGATGTGCTTGTTGGGTTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB666589             [                                  TCTTCTCTTCTCTTCTCCGGTGGCGATCTGAGTGGCCGACCGGCGGCGAGATGGCCTCCGCCGCCGTGACGCTCCCGCGGGTGATGCTGGCGGCGGCCGCGGTGCGGGCGGCGATGCTGGCGCTCGGGGAGTGGCAGGACGCGCACCTCGAGGTGCGGTACACCGACGTCGACTACCTCGTCTTCTCCGACGCCGCGGCGTCCGTCGCCGCGGGCGGGTCCCCCTTCGCCCGCGCCACCTACCGATACTCCCCGCTCCTCGCCTACCTGCTCGTCCCCAACTCTCTCCTCCACCCCACGTGGGGGAAGCTCCTCTTCTCCGCAGCAGATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACAGCACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCACAAGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGATGAATGGTGTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAATATACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCCTGCTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATCCAGTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTATGGGATGGGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB644002             [                                                      TGGCGATCTGAGTGGCCGACCGGCGGCGAGATGGCCTCCGCCGCCGTGACGCTCCCGCGGGTGATGCTGGCGGCGGCCGCGGTGCGGGCGGCGATGCTGGCGCTCGGGGAGTGGCAGGACGCGCACCTCGAGGTGCGGTACACCGACGTCGACTACCTCGTCTTCTCCGACGCCGCGGCGTCCGTCGCCGCGGGCGGGTCCCCCTTCGCCCGCGCCACCTACCGATACTCCCCGCTCCTCGCCTACCTGCTCGTCCCCAACTCTCTCCTCCACCCCACGTGGGGGAAGCTCCTCTTCTCCGCAGCAGATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACAGCACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCACAAGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGATGAATGGTGTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAATATACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCCTGCTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATCCAGTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB655842             [                                                                              GGCGACATGGCCTCCGCCGCCGTGACGCTCCCGCGGGTGATGCTGGCGGCGGCCGCGGTGCGGGCGGCGATGCTGGCGCTCGGGGAGTGGCAGGACGCGCACCTCGAGGTGCGGTACACCGACGTCGACTACCTCGTCTTCTCCGACGCCGCGGCGTCCGTCGCCGCGGGCGGGTCCCCCTTCGCCCGCGCCACCTACCGATACTCCCCGCTCCTCGCCTACCTGCTCGTCCCCAACTCTCTCCTCCACCCCACGTGGGGGAAGCTCCTCTTCTCCGCAGCAGATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACAGCACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCACAAGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGATGAATGGTGTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAATATACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCCTGCTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATCCAGTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTAT GGATGGGAATTC TAAATGAGGCACTACTTTACCATCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB644003             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTAT GGATGGGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTCT CTAGGG ATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACA AGGTCA TGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGACA TGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCATCCTTGCTCTTTTTTTTTTTAACCGTGAGACCCGGCTTGGTTGGTTTTGTACTAaaaaaaaaa                                                   ]
[+] EMBL BI802228             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTAC TTTCTCCTAGGGAATCTTCC TTTTTTTTGTTTCTCCAAACAGTT CATTT TTGCGTTTAACACAGGTCAGTGACAGCAC ATACTTTGTGTGGTTCTTTT CCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCCACTGCCCTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCCAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGACACTGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCATCCTTGCTC TTTTTTTTTTAACCCTGAGACCCGGCTTGGTTGGTTTTGTACTATTAACTTCTTGTCTTAGGTTGTATGGTAAGTCTGGAAAATGCAGTTGCTTAAAAAAAAAA]


>consensus_12375#0 CCCAATTGTCCCTCCCCCCGCGAATCTTCTCTTCTCTTCTCTTCTCTTCTCCGGTGGCGA TCTGAGTGGCCGACCGGCGGCGAGATGGCCTCCGCCGCCGTGACGCTCCCGCGGGTGATG CTGGCGGCGGCCGCGGTGCGGGCGGCGATGCTGGCGCTCGGGGAGTGGCAGGACGCGCAC CTCGAGGTGCGGTACACCGACGTCGACTACCTCGTCTTCTCCGACGCCGCGGCGTCCGTC GCCGCGGGCGGGTCCCCCTTCGCCCGCGCCACCTACCGATACTCCCCGCTCCTCGCCTAC CTGCTCGTCCCCAACTCTCTCCTCCACCCCACGTGGGGGAAGCTCCTCTTCTCCGCAGCA GATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACAGC ACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCACA AGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGATG AATGGTGTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAATAT ACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCCTG CTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATCCA GTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAGCC TTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGA CTGGTGTTTTCTTCTACCTTTATGGATGGGAATTCTTAAATGAGGCACTACTTTACCATC TTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCATC ATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGC AACTGGCACTCATTCTACGCTTCTCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAACAG TTGCATTTGTTGCGTTTAACAAGGTCATGACAGCACAATACTTTGTGTGGTTCTTTTGCC TGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTA TATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCA AGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACA TCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATCAA CGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTT TTATTACTTTACCAGCTGATGTATTTCTGGAGACATGGATACTGATTTTTCTTTTTAATG TTCTACTAGTATCTTATGCGACTTGCATCCTTGCTCTTTTTTTTTTTAACCCTGAGACCC GGCTTGGTTGGTTTTGTACTATTAACTTCTTGTCTTAGGTTGTATGGTAAGTCTGGAAAA TGCAGTTGCTTAAAAAAAAAA



consensusID : consensus_12375#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1342
fasta sequence
                              [TCCTGATTTCGTGATGTCGGGAGAACATGAACCTATTTACATTGTCCGTAATTACCTCGTTGGATTTTTGAGATGGCGGTGCATCATGTGTTTTGCAGATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACAGCACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCACAAGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGATGAATGGTGTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAATATACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCCTGCTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATCCAGTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTATGGATGGGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTCTCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACAAGGTCATGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGACATGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCATCCTTGCTCTTTTTTTTTTAACCCTGAGACCCGGCTTGGTTGGTTTTGTACTATTAACTTCTTGTCTTAGGTTGTATG]

[+] EMBL AK059472             [TCCTGATTTCGTGATGTCGGGAGAACATGAACCTATTTACATTGTCCGTAATTACCTCGTTGGATTTTTGAGATGGCGGTGCATCATGTGTTTTGCAGATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACAGCACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCACAAGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGATGAATGGTGTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAATATACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCCTGCTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATCCAGTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTATGGATGGGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTCTCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACAAGGTCATGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGACATGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCATCCTTGCTCTTTTTTTTTTAACCCTGAGACCCGGCTTGGTTGGTTTTGTACTATTAACTTCTTGTCTTAGGTTGTATG]
[-] EMBL CB666590             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTATGGATGGGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTCTCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACAAGGTCATGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGACATGGATACTGATTTTTCTTTTTAATGTTCTACTAGTAAAAGATGCGACTTGCATCCTTGCTCT                                                                    ]


>consensus_12375#1 TCCTGATTTCGTGATGTCGGGAGAACATGAACCTATTTACATTGTCCGTAATTACCTCGT TGGATTTTTGAGATGGCGGTGCATCATGTGTTTTGCAGATTTGCTTGTTGGGTTGTTCAT TGACACCATTCTGAAACTACGTGGTGTCCCTGACAGCACTCGGATCTGGTCTGTTGTAGC TTGGTTGTTCAACCCCTTCACGTTCACAATTGGCACAAGAGGAAACTGTGAGCCCATAGT CTGCGCTGTCATACTTTGGATCCTGATATGTTTGATGAATGGTGTAGAGTATTGCAGGCA TCATTCTGGTATGGTCTGATTGTGCACTTCAGAATATACCCAATCATATATGCAATTCCT TTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCCTGCTGGAAGGCCTATTCTTACACAG TGGACTTCTAAGCAACATTTACAAAGCGATAAATCCAGTCCAAGTGTGGAAAGGGCAACA TCATTGTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTG TTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTAT GGATGGGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCAT AACTTCTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATA CAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTC TCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACAAG GTCATGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGG ACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAA CTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCG CTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATC AACCACCACAAGTTCACTCCGCTCTTCTCATCATCAACGGTGAAGTCTGCAAGCAAGATT GCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTA TTTCTGGAGACATGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACT TGCATCCTTGCTCTTTTTTTTTTAACCCTGAGACCCGGCTTGGTTGGTTTTGTACTATTA ACTTCTTGTCTTAGGTTGTATG



consensusID : consensus_12375#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 792
fasta sequence
                              [GTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTATGGATGGGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTCTCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACAAGGTCATGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTTTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGACATGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCAAAAAAAAAAAAGA]

[-] EMBL CB655843             [GTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTATGGATGGGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTCTCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACAAGGTCATGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTTTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGACATGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCAAAAAAAAAAAAGA]


>consensus_12375#2 GTTAACTAATTTATGGAATTTTCTGACAAGCCTTATAACAAGAAATACGATCCTGTTTGG ATTACTTTCAGGATCTATGTTCTTTCTCTGGACTGGTGTTTTCTTCTACCTTTATGGATG GGAATTCTTAAATGAGGCACTACTTTACCATCTTTCTCGGACTGACCCGAGGCATAACTT CTCGATATATTTCTACCACATATATCTGCATCATCAGCAAGGGTTCTCAAGTATACAGAA GCTCGCTTCTTTTCTGCCACAGCTGATCGTGCAACTGGCACTCATTCTACGCTTCTCTAG GGATCTTCCGTTTTGTTTGTTTCTCCAAACAGTTGCATTTGTTGCGTTTAACAAGGTCAT GACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCATCCTCCCTTGGACTAC CATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCAACTGCA CTGGCTGATGTGGGCGTACATGCTTGAATTCAAGGGCCAAAACGTCTTCATACCGCTCTG GGCAGCAGGTCTCATGTTCCTGGCTGCAAACATCTTTGTTATGCTCATGGTGATCAACCA CCACAAGTTCACTCCGCTCTTTTCATCATCAACGGTGAAGTCTGCAAGCAAGATTGCTGC CAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCT GGAGACATGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCAA AAAAAAAAAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12375#1      ------------------------------------------------------------
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      CCCAATTGTCCCTCCCCCCGCGAATCTTCTCTTCTCTTCTCTTCTCTTCTCCGGTGGCGA 60
                                                                                   

consensus_12375#1      ------------------------------------------------------------
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      TCTGAGTGGCCGACCGGCGGCGAGATGGCCTCCGCCGCCGTGACGCTCCCGCGGGTGATG 120
                                                                                   

consensus_12375#1      ------------------------------------------------------------
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      CTGGCGGCGGCCGCGGTGCGGGCGGCGATGCTGGCGCTCGGGGAGTGGCAGGACGCGCAC 180
                                                                                   

consensus_12375#1      ------------------------------------------------------------
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      CTCGAGGTGCGGTACACCGACGTCGACTACCTCGTCTTCTCCGACGCCGCGGCGTCCGTC 240
                                                                                   

consensus_12375#1      -------------------------TCCTGATTTCGTGATGTCGGGAGAACATGAACCTA 35
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      GCCGCGGGCGGGTCCCCCTTCGCCCGCGCCACCTACCGATACTCCCCGCTCCTCG-CCTA 299
                                                                                   

consensus_12375#1      TTTACATTGTCCGTAATTACCTCGTTGGATTTTTGAGATGGCGGTGCATCATGTGTTTTG 95
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      CCTGC-TCGTCCCCAACTCTCTCCTCCACCCCACGTGGGGGAAGCTCCTCTTCTCCGCAG 358
                                                                                   

consensus_12375#1      CAGATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACA 155
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      CAGATTTGCTTGTTGGGTTGTTCATTGACACCATTCTGAAACTACGTGGTGTCCCTGACA 418
                                                                                   

consensus_12375#1      GCACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCA 215
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      GCACTCGGATCTGGTCTGTTGTAGCTTGGTTGTTCAACCCCTTCACGTTCACAATTGGCA 478
                                                                                   

consensus_12375#1      CAAGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGA 275
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      CAAGAGGAAACTGTGAGCCCATAGTCTGCGCTGTCATACTTTGGATCCTGATATGTTTGA 538
                                                                                   

consensus_12375#1      TGAATGGTGTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAAT 335
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      TGAATGGTGTAGAGTATTGCAGGCATCATTCTGGTATGGTCTGATTGTGCACTTCAGAAT 598
                                                                                   

consensus_12375#1      ATACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCC 395
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      ATACCCAATCATATATGCAATTCCTTTCGTTATAGTTCTGGGCAAGAATTATGCTGGTCC 658
                                                                                   

consensus_12375#1      TGCTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATC 455
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      TGCTGGAAGGCCTATTCTTACACAGTGGACTTCTAAGCAACATTTACAAAGCGATAAATC 718
                                                                                   

consensus_12375#1      CAGTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAG 515
consensus_12375#2      ------------------------------GTTAACTAATTTATGGAATTTTCTGACAAG 30
consensus_12375#0      CAGTCCAAGTGTGGAAAGGGCAACATCATTGTTAACTAATTTATGGAATTTTCTGACAAG 778
                                                     ******************************

consensus_12375#1      CCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTG 575
consensus_12375#2      CCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTG 90
consensus_12375#0      CCTTATAACAAGAAATACGATCCTGTTTGGATTACTTTCAGGATCTATGTTCTTTCTCTG 838
                       ************************************************************

consensus_12375#1      GACTGGTGTTTTCTTCTACCTTTATGGATGGGAATTCTTAAATGAGGCACTACTTTACCA 635
consensus_12375#2      GACTGGTGTTTTCTTCTACCTTTATGGATGGGAATTCTTAAATGAGGCACTACTTTACCA 150
consensus_12375#0      GACTGGTGTTTTCTTCTACCTTTATGGATGGGAATTCTTAAATGAGGCACTACTTTACCA 898
                       ************************************************************

consensus_12375#1      TCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCA 695
consensus_12375#2      TCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCA 210
consensus_12375#0      TCTTTCTCGGACTGACCCGAGGCATAACTTCTCGATATATTTCTACCACATATATCTGCA 958
                       ************************************************************

consensus_12375#1      TCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGT 755
consensus_12375#2      TCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGT 270
consensus_12375#0      TCATCAGCAAGGGTTCTCAAGTATACAGAAGCTCGCTTCTTTTCTGCCACAGCTGATCGT 1018
                       ************************************************************

consensus_12375#1      GCAACTGGCACTCATTCTACGCTTCTCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAAC 815
consensus_12375#2      GCAACTGGCACTCATTCTACGCTTCTCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAAC 330
consensus_12375#0      GCAACTGGCACTCATTCTACGCTTCTCTAGGGATCTTCCGTTTTGTTTGTTTCTCCAAAC 1078
                       ************************************************************

consensus_12375#1      AGTTGCATTTGTTGCGTTTAACAAGGTCATGACAGCACAATACTTTGTGTGGTTCTTTTG 875
consensus_12375#2      AGTTGCATTTGTTGCGTTTAACAAGGTCATGACAGCACAATACTTTGTGTGGTTCTTTTG 390
consensus_12375#0      AGTTGCATTTGTTGCGTTTAACAAGGTCATGACAGCACAATACTTTGTGTGGTTCTTTTG 1138
                       ************************************************************

consensus_12375#1      CCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTG 935
consensus_12375#2      CCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTG 450
consensus_12375#0      CCTGCTACCCCTCATCCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTG 1198
                       ************************************************************

consensus_12375#1      TATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATT 995
consensus_12375#2      TATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATT 510
consensus_12375#0      TATATTGGTGTGGATGGGGTCCCAACTGCACTGGCTGATGTGGGCGTACATGCTTGAATT 1258
                       ************************************************************

consensus_12375#1      CAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAA 1055
consensus_12375#2      CAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAA 570
consensus_12375#0      CAAGGGCCAAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCTGCAAA 1318
                       ************************************************************

consensus_12375#1      CATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATC 1115
consensus_12375#2      CATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTTTCATCATC 630
consensus_12375#0      CATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATC 1378
                       *************************************************** ********

consensus_12375#1      AACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTT 1175
consensus_12375#2      AACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTT 690
consensus_12375#0      AACGGTGAAGTCTGCAAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTT 1438
                       ************************************************************

consensus_12375#1      TTTTATTACTTTACCAGCTGATGTATTTCTGGAGACATGGATACTGATTTTTCTTTTTAA 1235
consensus_12375#2      TTTTATTACTTTACCAGCTGATGTATTTCTGGAGACATGGATACTGATTTTTCTTTTTAA 750
consensus_12375#0      TTTTATTACTTTACCAGCTGATGTATTTCTGGAGACATGGATACTGATTTTTCTTTTTAA 1498
                       ************************************************************

consensus_12375#1      TGTTCTACTAGTATCTTATGCGACTTGCATCCTTGCTCTTTTTTTTTT-AACCCTGAGAC 1294
consensus_12375#2      TGTTCTACTAGTATCTTATGCGACTTGCAAAAAAAAAAAAGA------------------ 792
consensus_12375#0      TGTTCTACTAGTATCTTATGCGACTTGCATCCTTGCTCTTTTTTTTTTTAACCCTGAGAC 1558
                       *****************************                               

consensus_12375#1      CCGGCTTGGTTGGTTTTGTACTATTAACTTCTTGTCTTAGGTTGTATG------------ 1342
consensus_12375#2      ------------------------------------------------------------
consensus_12375#0      CCGGCTTGGTTGGTTTTGTACTATTAACTTCTTGTCTTAGGTTGTATGGTAAGTCTGGAA 1618
                                                                                   

consensus_12375#1      -----------------------
consensus_12375#2      -----------------------
consensus_12375#0      AATGCAGTTGCTTAAAAAAAAAA 1641
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)