These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1305 fasta sequence [AGGCGAGAAAGAGATTATCACTGTTGTTTTTTTCGTTTTCTTGCTTGCGGCAAGCAAAGCAAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGTGGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGGCAT-TCGCCGAGGAGTGGCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGATCCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTCTGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAGTCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACTAATCCTGACTATGCTCAAGGCTACAAAATTATGTTTAC-AGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATTGGATGCACTAAATGAGGTTCTGAAAGAACCTGTACCGATGAACCGCTTCAGGCCAAACATTTTGGTGGATGGATGCCACCCATACTCAGAGGATCTATGGAAAACCATAAAAATAAACAAGTTAACATTTCAGGGTGTCAAGTTATGCAACCGCTGCAAGGTGCCTACCATTAACCAAGAAAATGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGTTCTACGTCCAAGCCACAAAAACAAACGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGACCTAGTAGTACTGTAGAATGCTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK069278 [AGGCGAGAAAGAGATTATCACTGTTGTTTTTTTCGTTTTCTTGCTTGCGGCAAGCAAAGCAAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGTGGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGGCAT TCGCCGAGGAGTGGCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGATCCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTCTGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAGTCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACTAATCCTGACTATGCTCAAGGCTACAAAATTATGTTTAC AGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATTGGATGCACTAAATGAGGTTCTGAAAGAACCTGTACCGATGAACCGCTTCAGGCCAAACATTTTGGTGGATGGATGCCACCCATACTCAGAGGATCTATGGAAAACCATAAAAATAAACAAGTTAACATTTCAGGGTGTCAAGTTATGCAACCGCTGCAAGGTGCCTACCATTAACCAAGAAAATGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGTTCTACGTCCAAGCCACAAAAACAAACGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGACCTAGTAGTACTGTAGAATGCTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTC ] [+] EMBL C97060 [ TTTTCTTGCTTGCGGCAAGCAAAGCAAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGNCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGTAGAGGGTGGAGCCCAAGNTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGaatttc ] [-] EMBL AU029741 [ TTTCTTGCTTGCGGCAAGCAAAGCAAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCNACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGTGGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGA GATT TCGCCGAGGAGTGGCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAG ACCTTGAATn ] [+] EMBL AK105941 [ CTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGTGGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGGCAT TCGCCGAGGAGTGGCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGATCCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTCTGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAGTCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACCAATCCTGACTATGCTCAAGGCTACAAAATTATGTTTAC AGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATTGGATGCACTAAATGAGGTTCTGAAAGAACCTGTACCGATGAACCGCTTCAGGCCAAACATTTTGGTGGATGGATGCCACCCATACTCAGAGGATCTATGGAAAACCATAAAAATAAACAAGTTAACATTTCAGGGTGTCAAGTTATGCAACCGCTGCAAGGTGCCTACCATTAACCAAGAAAATGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGTTCTACGTCCAAGCCACAAAAACAAACGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGACCTAGTAGTACTGTAGAATGCTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAtagcaa ] [+] EMBL OSS14719A [ ngngnatGATGCCGCCGGAG ATNTCGCCGAGGAGTGGCGGCCGACCG CGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGATCCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTCTGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAGTCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACTAATCCTGACTATGCTCAAGGCTACAAAATTATGTTTACAAGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATTGGATGCACTAAATGAGGTTCTGAAAGAcc ] [+] EMBL AU164989 [ TGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGTTCTACGTCCAAGCCACAAAAACAANCGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGNCCTAGTAGTACTGTAGAATGCTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAAAAAAAAAAAAAAAAAA ] [+] EMBL AU089748 [ ATANTGGCAGCTGTTCAGNGNCCTAGTAGTNCTGTAGAATGNTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATNTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF329048 [ AGGCTTGAGAAAATGCGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAAAAAAA ] [-] EMBL CF329047 [ GGCTTGAGAAAATGCGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAAAAAAAA ] consensusID : consensus_12387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence [TTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGAGGTGTAGAAGGTCTGAATTTCTTTGCATCATTGTAAATTTTNTGCACAGGCTGAGAAAGGTATAGACAGATAACGACACTGNACTAAACGGCACATG] [+] EMBL AA751109 [TTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGAGGTGTAGAAGGTCTGAATTTCTTTGCATCATTGTAAATTTTNTGCACAGGCTGAGAAAGGTATAGACAGATAACGACACTGNACTAAACGGCACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12387#0 AGGCGAGAAAGAGATTATCACTGTTGTTTTTTTCGTTTTCTTGCTTGCGGCAAGCAAAGC 60 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 AAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCT 120 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 CGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATA 180 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 CCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTT 240 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 CCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGT 300 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 GGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGGCATTCGCCGAGGAGTG 360 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 GCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGAT 420 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 CCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTC 480 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 TGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAG 540 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 TCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACTAATCCTGACTATGCTCA 600 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 AGGCTACAAAATTATGTTTACAGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATT 660 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 GGATGCACTAAATGAGGTTCTGAAAGAACCTGTACCGATGAACCGCTTCAGGCCAAACAT 720 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 TTTGGTGGATGGATGCCACCCATACTCAGAGGATCTATGGAAAACCATAAAAATAAACAA 780 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 GTTAACATTTCAGGGTGTCAAGTTATGCAACCGCTGCAAGGTGCCTACCATTAACCAAGA 840 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 AAATGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGT 900 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 TCTACGTCCAAGCCACAAAAACAAACGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAA 960 consensus_12387#1 ------------------------------------------------------------ consensus_12387#0 GGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGT 1020 consensus_12387#1 ---------TTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGT 51 ************************************************** consensus_12387#0 TCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGC 1080 consensus_12387#1 TCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGC 111 ************************************************************ consensus_12387#0 TGTTCAGAGACCTAGTAGTACTGTAGAATG-CTGAATTTCTCGGCATCATTGTAAATTTT 1139 consensus_12387#1 TGTTCAGAGA---------GGTGTAGAAGGTCTGAATTTCTTTGCATCATTGTAAATTTT 162 ********** ******* * ********** ***************** consensus_12387#0 ATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATC 1199 consensus_12387#1 NTGC----ACAGG--CTGAGAAAG---GTATAGACAGATAACG----ACACTGNACTAAA 209 *** *** * ******* ** * * * * * ** * ** * consensus_12387#0 TGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAA 1259 consensus_12387#1 CGGCACATG--------------------------------------------------- 218 ***** consensus_12387#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1305 consensus_12387#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||