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Oryza sativa
cluster # 12388 cluster # 12388       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12388#0 length = 1662 sequences # 7  
consensus_12388#1 length = 751 sequences # 2  
consensus_12388#2 length = 324 sequences # 1  

consensusID : consensus_12388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1662
fasta sequence
                              [AATTGAAAACTCTGGGCGCAAGCCGCGGGGACTCCGCGGCTAGGGTTAGGGAGGAGGGGGAGGTCCTCCGCCACCCGCCGCCGCCGCCGCCGCCGGCCGCCGCTGCCGGCCGCCGCCACCGCCCCTCCGCTCGATCATCTCCGCCGATCTCCGCCGATCTCCGCCGCCTTCTCCCGTGCACAGAGGGTAGGGTCGGGGGGAAGAAGGGGGAGGTCCTCCGCCACCCGGTCGCCGCCGCCGCCACCGCCCTCCGCAACTCATCGGACGGGTGAACGCTCGATCATCGCCGCCGATCTCCGCCGCCTTCTCGCGTGCACAGAGGGTTCTGCGGCTAGGGTCGGGGGGAAGAAGGGGGAGGTCCTCCGCCGCCCACCTCTCCAACGCCTGAAGGGGGAGTGTGCTCCGCCACCGCAGCCCCCGGAAATCCGCAGCTCCGGCCACGCCACCGCATCGCCCCCCCGCCTCCGCCCCTAATCCCACGGCCAGCATCCTCACTGCTCGTCCTCCACCACGGCCATCGCGCGTGGCGTCTGCAGTTCGGCTGTCTTGTTTTCTCTGTCGCCGCCCCAGGCCCCCAGTTTGCTTGTTGCTGTCGAGACATCACCAGTTCGACT-GTTGCTTCGCCTGAAGGCTCCATGGCTGACCATCCTCCCACAGTGTTCTTAAATGAGCTGGAGAAATGGGTGTCCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTGAGAATGGGAATTCACTTTACCTCTTAACATGTGCGCACACGATTGATCATGTTTACACAGCAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCGATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAAGTGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCCTTCCAGACACTATGACGATGTCAGT-AACACCAATGA-GTATGG-CTATAATATGAATTTAATTGAGGTGGATATGATGGTA-GCAGAGGGTAGCT-CAGGAGCA-CCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCATGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTAACTGAGTGGGGAATTTTTCCTCGAGAGAAGGTGATTCAACAAAAGAAATCACAGAAGTGACAACTGATTCATCATTGAAGCA-CTTGGATAGTAGAGCA-AACGTCCAATTGAATTTTGTTTCAGATGTTTTTACTCGTTGACA-CTGTAGCACAGATTCTGTTTAAAGTTTTGCATGGTTTGGTGACCCTCCACCATGTTGTGATATTGATTGTTCTGCAGTTTTGCTAAAAATCTAAAAAAA]

[+] EMBL AK109133             [AATTGAAAACTCTGGGCGCAAGCCGCGGGGACTCCGCGGCTAGGGTTAGGGAGGAGGGGGAGGTCCTCCGCCACCCGCCGCCGCCGCCGCCGCCGGCCGCCGCTGCCGGCCGCCGCCACCGCCCCTCCGCTCGATCATCTCCGCCGATCTCCGCCGATCTCCGCCGCCTTCTCCCGTGCACAGAGGGTAGGGTCGGGGGGAAGAAGGGGGAGGTCCTCCGCCACCCGGTCGCCGCCGCCGCCACCGCCCTCCGCAACTCATCGGACGGGTGAACGCTCGATCATCGCCGCCGATCTCCGCCGCCTTCTCGCGTGCACAGAGGGTTCTGCGGCTAGGGTCGGGGGGAAGAAGGGGGAGGTCCTCCGCCGCCCACCTCTCCAACGCCTGAAGGGGGAGTGTGCTCCGCCACCGCAGCCCCCGGAAATCCGCAGCTCCGGCCACGCCACCGCATCGCCCCCCCGCCTCCGCCCCTAATCCCACGGCCAGCATCCTCACTGCTCGTCCTCCACCACGGCCATCGCGCGTGGCGTCTGCAGTTCGGCTGTCTTGTTTTCTCTGTCGCCGCCCCAGGCCCCCAGTTTGCTTGTTGCTGTCGAGACATCACCAGTTCGACT GTTGCTTCGCCTGAAGGCTCCATGGCTGACCATCCTCCCACAGTGTTCTTAAATGAGCTGGAGAAATGGGTGTCCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTGAGAATGGGAATTCACTTTACCTCTTAACATGTGCGCACACGATTGATCATGTTTACACAGCAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCGATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAAGTGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCCTTCCAGACACTATGACGATGTCAGT AACACCAATGA GTATGG CTATAATATGAATTTAATTGAGGTGGATATGATGGTA GCAGAGGGTAGCT CAGGAGCA CCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCATGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTAACTGAGTGGGGAATTTTTCCTCGAGAGAAGGTGATTCAACAAAAGAAATCACAGAAGTGACAACTGA                                                                                                                                                                                 ]
[+] EMBL CA999635             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAGTTCGACTGGTTGCTTCGCCTGAAGGCTCCATGGCTGACCATCCTCCCACAGTGTTCTTAAATGAGCTGGAGAAATGGGTGTCCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGTTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB652494             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCGCCTGAAGGCTCCATGGCTGACCATCCTCCCACAGTGTTCTTAAATGAGCTGGAGAAATGGGTGTCCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTGAGAATGGGAATTCACTTTACCTCTTAACATGTGCGCACACGATTGATCATGTTTACACAGCAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCGATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAAGTGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCCTTCCAGACACTATGCCGATGTCAGT AACACCAATGACGTATGG CTATAATATGAATTTAATTGAGGTGGATATG                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB663812             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCTCTTAACATGTGCGCACACGATTGATCATGTTTACACAGCAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCGATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCATAACTTGCCGTGCTCGCTAGAGTAAGTGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCCTTCCAGACACTATGACGATGTCAGT AACACCAATGA GTATGG CTATAATATGAATTTAATTGAGGTGGATATGATGGTA GCACAGGGTAGCT CAGGAGCA CCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCATGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTAACTGAGTGG                                                                                                                                                                                                                                           ]
[-] EMBL AU222693             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAAGTGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCCTTCCAGACACTATGACGATGTCAGT AACACCAATGA GTATGG CTATAATATGAATTTAATTGAGGTGGATATGATGGTA GCAGAGGGTAGCT CAGGAGCA CCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCATGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTAACTG                                                                                                                                                                                                                                                ]
[-] EMBL CF292348             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAAGTGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCCTTCCAGACACTATGACGATGTCAGT AACACCAATGA GTATGG CTATAATATGAATTTAATTGAGGTGGATATGATGGTA GCAGAGGGTAGCT CAGGAGCA CCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCATGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTAACTGAGTGGGGAATTTTTCCTCGAGAGAAGGTGATTCAACAAAAGAAATCACAGAAGTGACAACTGATTCATCATTGAAGCA CTTGGATAGTAGAGCA AACGTCCAATTGAATTTTGTTTCAGATGTTTTTACTCGTTGACA CTGTAGCACAGATTCTGTTTAAAGTTTTGCATGGTTTGGTGACCCTCCACCATGTTGTGATATTGATTGTTCTGCAGTTTTGCTAAAAA          ]
[+] EMBL BM421093             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gTGTCAGTGAACCCCAATGA GTATGGCCTATAATATGAATTTAATTGAGGTGAATATGATGGTANCCAGAGGTTAGCTCCAGGAGCACCCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCATGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTAACTGAGTGGGGAATTTTTCCTCGAGAGAAGGTGATTCAAC AAAGAAATCACAGAAGTGACAACTGATTCATCATTGAAGCACCTTGGATAGTAGAGCACAACGTCC ATTGAATTTTGTTTCAGATGTTTTTACTCGTTGACACCTGTAGCACAGATTCTGTTTAAAGTTTTGCATGGTTTGGTGACCCTCCACCATGTTGTGATATTGATTGTTCT CAGTTTTGCTATTNGTCTAAAAAAA]


>consensus_12388#0 AATTGAAAACTCTGGGCGCAAGCCGCGGGGACTCCGCGGCTAGGGTTAGGGAGGAGGGGG AGGTCCTCCGCCACCCGCCGCCGCCGCCGCCGCCGGCCGCCGCTGCCGGCCGCCGCCACC GCCCCTCCGCTCGATCATCTCCGCCGATCTCCGCCGATCTCCGCCGCCTTCTCCCGTGCA CAGAGGGTAGGGTCGGGGGGAAGAAGGGGGAGGTCCTCCGCCACCCGGTCGCCGCCGCCG CCACCGCCCTCCGCAACTCATCGGACGGGTGAACGCTCGATCATCGCCGCCGATCTCCGC CGCCTTCTCGCGTGCACAGAGGGTTCTGCGGCTAGGGTCGGGGGGAAGAAGGGGGAGGTC CTCCGCCGCCCACCTCTCCAACGCCTGAAGGGGGAGTGTGCTCCGCCACCGCAGCCCCCG GAAATCCGCAGCTCCGGCCACGCCACCGCATCGCCCCCCCGCCTCCGCCCCTAATCCCAC GGCCAGCATCCTCACTGCTCGTCCTCCACCACGGCCATCGCGCGTGGCGTCTGCAGTTCG GCTGTCTTGTTTTCTCTGTCGCCGCCCCAGGCCCCCAGTTTGCTTGTTGCTGTCGAGACA TCACCAGTTCGACTGTTGCTTCGCCTGAAGGCTCCATGGCTGACCATCCTCCCACAGTGT TCTTAAATGAGCTGGAGAAATGGGTGTCCGTCAAAAGTAGAGAATCAATCTTGTCTGTCA GGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTG CTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTG AGAATGGGAATTCACTTTACCTCTTAACATGTGCGCACACGATTGATCATGTTTACACAG CAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCG ATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCC GTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATC TGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGT GCTCGCTAGAGTAAGTGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTG TAGGGCGCATATCACATCCTTCCAGACACTATGACGATGTCAGTAACACCAATGAGTATG GCTATAATATGAATTTAATTGAGGTGGATATGATGGTAGCAGAGGGTAGCTCAGGAGCAC CGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTT TTTCATGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTAACTGAGTGGGGAATTTTTC CTCGAGAGAAGGTGATTCAACAAAAGAAATCACAGAAGTGACAACTGATTCATCATTGAA GCACTTGGATAGTAGAGCAAACGTCCAATTGAATTTTGTTTCAGATGTTTTTACTCGTTG ACACTGTAGCACAGATTCTGTTTAAAGTTTTGCATGGTTTGGTGACCCTCCACCATGTTG TGATATTGATTGTTCTGCAGTTTTGCTAAAAATCTAAAAAAA



consensusID : consensus_12388#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 751
fasta sequence
                              [GAGTAGAAACCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTGAGAATGGGAATTCACTTTACCTCTT-ACATGTGCGCACACGATTGATCATGTTTACACAGCAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCGATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAAGTGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCCTTCCAGACACTATGACGATGTCAGTAACACCAATGAGTATGGCTATAATATGAATTTAATTGAGGTGGATATGATGGTAGCAGAGGGTAGCTCAGGAGCACCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCAGGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTTTTAAGGGGG]

[+] EMBL CF292349             [GAGTAGAAACCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTGAGAATGGGAATTCACTTTACCTCTT ACATGTGCGCACACGATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB655054             [       gtCCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTGAGAATGGGAATTCACTTTACCTCTTAACATGTGCGCACACGATTGATCATGTTTACACAGCAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCGATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAAGTGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCCTTCCAGACACTATGACGATGTCAGTAACACCAATGAGTATGGCTATAATATGAATTTAATTGAGGTGGATATGATGGTAGCAGAGGGTAGCTCAGGAGCACCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCAGGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTTTTAAGGGGG]


>consensus_12388#1 GAGTAGAAACCGTCAAAAGTAGAGAATCAATCTTGTCTGTCAGGTTTAAACCCCATGCTG CAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTGCTCTGAAGAGAATTGAAC GGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTGAGAATGGGAATTCACTTT ACCTCTTACATGTGCGCACACGATTGATCATGTTTACACAGCAACCAAAGAGATCTCCGT TCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCGATCACCAACAAAACAACGG TTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCCGTGTGGATTGCAAGAAGGA TATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATCTGAAAGGGAAGCAATGCAG ATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGTGCTCGCTAGAGTAAGTGGT GATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATCTGTAGGGCGCATATCACATCC TTCCAGACACTATGACGATGTCAGTAACACCAATGAGTATGGCTATAATATGAATTTAAT TGAGGTGGATATGATGGTAGCAGAGGGTAGCTCAGGAGCACCGTTGCTTAATTGCAGAGC CAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAATGTTTTTCAGGCTTTGTTTCACT TTCTGATATATGTAAGAAGCTTTTAAGGGGG



consensusID : consensus_12388#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence
                              [CCGCGGCTAGGGTTAGGGAGGAGGGGGAGGTCCTCCGCCACCCGCCGCCGCCGCCGCCGCCGGCCGCCGCTGCCGGCCGCCGCCACCGCCCCTCCGCAACTCATCGGACGGCTGAACGCTCGATCATCTCCGCCGATCTCCGCCGATCTCCGCCGCCTTCTCCCGAGCACAGAGGGTAAGGTCGGGGGGAACAAGGGGGAGGTCCTCCGCCACCCGGACGCCGCCGCCACCACCGCCCTCCGCAACTCATCGGACGGGTGAACGCTCGATCATCGCCGCCGATCTCCACCGCCTTCTCGCGTGCACAGAGGGTTCTGAGGCTAG]

[+] EMBL CB655053             [CCGCGGCTAGGGTTAGGGAGGAGGGGGAGGTCCTCCGCCACCCGCCGCCGCCGCCGCCGCCGGCCGCCGCTGCCGGCCGCCGCCACCGCCCCTCCGCAACTCATCGGACGGCTGAACGCTCGATCATCTCCGCCGATCTCCGCCGATCTCCGCCGCCTTCTCCCGAGCACAGAGGGTAAGGTCGGGGGGAACAAGGGGGAGGTCCTCCGCCACCCGGACGCCGCCGCCACCACCGCCCTCCGCAACTCATCGGACGGGTGAACGCTCGATCATCGCCGCCGATCTCCACCGCCTTCTCGCGTGCACAGAGGGTTCTGAGGCTAG]


>consensus_12388#2 CCGCGGCTAGGGTTAGGGAGGAGGGGGAGGTCCTCCGCCACCCGCCGCCGCCGCCGCCGC CGGCCGCCGCTGCCGGCCGCCGCCACCGCCCCTCCGCAACTCATCGGACGGCTGAACGCT CGATCATCTCCGCCGATCTCCGCCGATCTCCGCCGCCTTCTCCCGAGCACAGAGGGTAAG GTCGGGGGGAACAAGGGGGAGGTCCTCCGCCACCCGGACGCCGCCGCCACCACCGCCCTC CGCAACTCATCGGACGGGTGAACGCTCGATCATCGCCGCCGATCTCCACCGCCTTCTCGC GTGCACAGAGGGTTCTGAGGCTAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12388#0      AATTGAAAACTCTGGGCGCAAGCCGCGGGGACTCCGCGGCTAGGGTTAGGGAGGAGGGGG 60
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      AGGTCCTCCGCCACCCGCCGCCGCCGCCGCCGCCGGCCGCCGCTGCCGGCCGCCGCCACC 120
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      GCCCCTCCGCTCGATCATCTCCGCCGATCTCCGCCGATCTCCGCCGCCTTCTCCCGTGCA 180
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      CAGAGGGTAGGGTCGGGGGGAAGAAGGGGGAGGTCCTCCGCCACCCGGTCGCCGCCGCCG 240
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      CCACCGCCCTCCGCAACTCATCGGACGGGTGAACGCTCGATCATCGCCGCCGATCTCCGC 300
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      CGCCTTCTCGCGTGCACAGAGGGTTCTGCGGCTAGGGTCGGGGGGAAGAAGGGGGAGGTC 360
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      CTCCGCCGCCCACCTCTCCAACGCCTGAAGGGGGAGTGTGCTCCGCCACCGCAGCCCCCG 420
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      GAAATCCGCAGCTCCGGCCACGCCACCGCATCGCCCCCCCGCCTCCGCCCCTAATCCCAC 480
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      GGCCAGCATCCTCACTGCTCGTCCTCCACCACGGCCATCGCGCGTGGCGTCTGCAGTTCG 540
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      GCTGTCTTGTTTTCTCTGTCGCCGCCCCAGGCCCCCAGTTTGCTTGTTGCTGTCGAGACA 600
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      TCACCAGTTCGACTGTTGCTTCGCCTGAAGGCTCCATGGCTGACCATCCTCCCACAGTGT 660
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      TCTTAAATGAGCTGGAGAAATGGGTGTCCGTCAAAAGTAGAGAATCAATCTTGTCTGTCA 720
consensus_12388#1      -----------------GAGTAGAAA-CCGTCAAAAGTAGAGAATCAATCTTGTCTGTCA 42
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      GGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTG 780
consensus_12388#1      GGTTTAAACCCCATGCTGCAGAAGTCAAGCGTACTCTGGATGCCCTGGAGGTTGTACCTG 102
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      CTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTG 840
consensus_12388#1      CTCTGAAGAGAATTGAACGGAGCAAGGTGGTAGGGTATGCGACTTGCTCTGTCGTAGCTG 162
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      AGAATGGGAATTCACTTTACCTCTTAACATGTGCGCACACGATTGATCATGTTTACACAG 900
consensus_12388#1      AGAATGGGAATTCACTTTACCTCTTA-CATGTGCGCACACGATTGATCATGTTTACACAG 221
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      CAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCG 960
consensus_12388#1      CAACCAAAGAGATCTCCGTTCAGGACATCAACCGCTTGTTCGATACTGAAGTGGTCTGCG 281
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      ATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCC 1020
consensus_12388#1      ATCACCAACAAAACAACGGTTTGGGCGGAGAAAGAAAATTTACTGAAGCCATTGTCACCC 341
consensus_12388#2      -------CCGCGGCTAGGGTTAGGGAGGAGGGGGAGGTCCTCCGCCACCCGCCGCCGCCG 53
                               *    * * **** *** ****   **     * *   * **   * * ** 

consensus_12388#0      GTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATC 1080
consensus_12388#1      GTGTGGATTGCAAGAAGGATATCTTGTTGGTTCTCGTGGACAAATCAAAACTCCTAAATC 401
consensus_12388#2      CCGC----CGCCGGCCGCCGCTGCCGGCCGCCGCCACCGCCCCTCCGCAACTCATCGGAC 109
                         *      **  *  *    *   *   *    *   * *    *  ***** *    *

consensus_12388#0      TGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGT 1140
consensus_12388#1      TGAAAGGGAAGCAATGCAGATTCCAACATCCTCCATTGGTTGCAAGCCAGAACTTGCCGT 461
consensus_12388#2      GGCT--GAACGCTCGATCATCTCCGCCGATCTCCGCCGATCTCC-GCCGCCTTCTCCCGA 166
                        *    * * **         ***  *   ****   * *  *  ***      * *** 

consensus_12388#0      GCTCGCTAGAGTAAG--TGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATC 1198
consensus_12388#1      GCTCGCTAGAGTAAG--TGGTGATGATCTCGTGGCCGCCTTGTATGAACAGGGCAACATC 519
consensus_12388#2      GCACAG-AGGGTAAGGTCGGGGGGAACAAGGGGGAGGTCCTCCGCCACCCGGACGCCGCC 225
                       ** *   ** *****   ** *   *    * **  * * *     * * ** *  *  *

consensus_12388#0      TGTAGGGC-GCATATCACATCCTTCCAGACACTATGACGATGTCAGTAACACCAATGAGT 1257
consensus_12388#1      TGTAGGGC-GCATATCACATCCTTCCAGACACTATGACGATGTCAGTAACACCAATGAGT 578
consensus_12388#2      GCCACCACCGCCCTCCGCAACTCATCGGACGG-GTGAACGCTCGATCATCGCCGCCGATC 284
                          *   * **    * ** *    * ***    ***       *  * * **   **  

consensus_12388#0      ATGGCTATAATATGAATTTAATTGAGGTGGATATGATGGTAGCAGAGGGTAGCTCAGGAG 1317
consensus_12388#1      ATGGCTATAATATGAATTTAATTGAGGTGGATATGATGGTAGCAGAGGGTAGCTCAGGAG 638
consensus_12388#2      TCCACCGCCTTCTCGCGTGCACAGAG--GGTTCTGAGGCTAG------------------ 324
                           *     * *    *  *  ***  ** * *** * ***                  

consensus_12388#0      CACCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAAT 1377
consensus_12388#1      CACCGTTGCTTAATTGCAGAGCCAATTTTGTTGGTCTACTTCAAGGAGGTGGTAAGGAAT 698
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      GTTTTTCATGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTAACTGAGTGGGGAATTT 1437
consensus_12388#1      GTTTTTCAGGCTTTGTTTCACTTTCTGATATATGTAAGAAGCTT-TTAAGGGGG------ 751
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      TTCCTCGAGAGAAGGTGATTCAACAAAAGAAATCACAGAAGTGACAACTGATTCATCATT 1497
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      GAAGCACTTGGATAGTAGAGCAAACGTCCAATTGAATTTTGTTTCAGATGTTTTTACTCG 1557
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      TTGACACTGTAGCACAGATTCTGTTTAAAGTTTTGCATGGTTTGGTGACCCTCCACCATG 1617
consensus_12388#1      ------------------------------------------------------------
consensus_12388#2      ------------------------------------------------------------
                                                                                   

consensus_12388#0      TTGTGATATTGATTGTTCTGCAGTTTTGCTAAAAATCTAAAAAAA 1662
consensus_12388#1      ---------------------------------------------
consensus_12388#2      ---------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)