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Oryza sativa
cluster # 12392 cluster # 12392       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12392#0 length = 1669 sequences # 9  
consensus_12392#1 length = 400 sequences # 1  

consensusID : consensus_12392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1669
fasta sequence
                              [GGAAGGGAAAAATAAAGTGTCAACAGATGAACTATCTGGTGGAGCAAGAATCCACTACATTTTTCAGTCAATTTTTGTCAAGAGCTTGGAGGAAGTGGACCCCTGTAAGAGCATAACTGATGAAGATATCCGTACAGCCATACAGAATTCTGACGGTCCAAAGGGTCCTATGTTTCTGCCAGAGTTGCCGTTTGAGATTCTTGTGCGAAGGCAAATAAGTCGTTTGCTTGATCCAAGCCTTCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTAACCAGCGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAGGCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCCTAAGGATGGTACTGCTATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGCAAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGGAACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAGCAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGAGCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGCCATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGCTGTTCCAAAGGCTATAATGCATTTTCTGGTGAA-CCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGGACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGCCCTGCTGAATATGCTACTGGCCTGCCAAAAATCCATGGTCTCAGCAATGGCGACCCCAGCATCATTTACGCATCCTCGCCTAACCACAATCGAAAGAAAGCATCTCACGAAGAT-CAACATGGGTCGGTAGCGTCATATAGTTCGACTTCCTATCCAGATGCTAATGGTGGGCTTCTTTCCACTTGATCTTGATCAATTTCTCCTATCATTTTCAAGTGACGTGCTTCAGTTTTGTCCTGTAAATTCAATTTTTTGTTAGTGGGCTATTTTTTTCTGCAACTGGCAGCTATTTCTGGTGCCGCACCTTGATCTTGTAATCTAGCAGTTGCACTGAAATAGCAGGACTACAGGAGCCCAAGTACATTCATAGCCAACAGGGGCAATGGAATGGTGGCTGTGTAGATTAACAATGTAACTAGCCCCTTATATCATTTTGCCTTTTTTGTACTTTTGAAAAGCCAGAGCGGGAACGGCATATTACGAATAACTTGCAATCACAAAGTTATTTTACTGCAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK105435             [GGAAGGGAAAAATAAAGTGTCAACAGATGAACTATCTGGTGGAGCAAGAATCCACTACATTTTTCAGTCAATTTTTGTCAAGAGCTTGGAGGAAGTGGACCCCTGTAAGAGCATAACTGATGAAGATATCCGTACAGCCATACAGAATTCTGACGGTCCAAAGGGTCCTATGTTTCTGCCAGAGTTGCCGTTTGAGATTCTTGTGCGAAGGCAAATAAGTCGTTTGCTTGATCCAAGCCTTCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTAACCAGCGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAGGCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCCTAAGGATGGTACTGCTATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGCAAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGGAACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAGCAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGAGCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGCCATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGCTGTTCCAAAGGCTATAATGCATTTTCTGGTGAA CCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGGACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGCCCTGCTGAATATGCTACTGGCCTGCCAAAAATCCATGGTCTCAGCAATGGCGACCCCAGCATCATTTACGCATCCTCGCCTAACCACAATCGAAAGAAAGCATCTCACGAAGAT CAACATGGGTCGGTAGCGTCATATAGTTCGACTTCCTATCCAGATGCTAATGGTGGGCTTCTTTCCACTTGATCTTGATCAATTTCTCCTATCATTTTCAAGTGACGTGCTTCAGTTTTGTCCTGTAAATTCAATTTTTTGTTAGTGGGCTATTTTTTTCTGCAACTGGCAGCTATTTCTGGTGCCGCACCTTGATCTTGTAATCTAGCAGTTGCACTGAAATAGCAGGACTACAGGAGCCCAAGTACATTCATAGCCAACAGGGGCAATGGAATGGTGGCTGTGTAGATTAACAATGTAACTAGCCCCTTATATCATTTTG                                                                                                     ]
[+] EMBL CB665204             [                                                                                                               CATAACTGATGAAGATATCCGTACAGCCATACAGAATTCTGACGGTCCAAAGGGTCCTATGTTTCTGCCAGAGTTGCCGTTTGAGATTCTTGTGCGAAGGCAAATAAGTCGTTTGCTTGATCCAAGCCTTCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTAACCAGCGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAGGCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCCTAAGGATGGTACTGCTATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGCAAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGGAACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAGCAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGAGCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGCCATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGCTGTTCCAAAGGCTATAATGCATTTTCTGGTGAACCCACAC AAGCGTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB665178             [                                                                                                               CATAACTGATGAAGATATCCGTACAGCCATACAGAATTCTGACGGTCCAAAGGGTCCTATGTTTCTGCCAGAGTTGCCGTTTGAGATTCTTGTGCGAAGGCAAATAAGTCGTTTGCTTGATCCAAGCCTTCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTAACCAGCGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAGGCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCCTAAGGATGGTACTGCTATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGCAAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGGAACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAGCAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGAGCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGCCATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB665180             [                                                                                                               CATAACTGATGAAGATATCCGTACAGCCATACAGAATTCTGACGGTCCAAAGGGTCCTATGTTTCTGCCAGAGTTGCCGATTGAGATTCTTGTGCGAAGGCAAATAAGTCGTTTGCTTGATCCAAGCCTTCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTAACCAGCGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAGGCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCCTAAGGATGGTACTGCTATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGCAAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGGAACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAGCAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGAGCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGCCATTGTGAGACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGCTGTTCCAAAGGCTATAATGCATTTTCTGGTGAA CCACACAAAGCGTGAGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB665181             [                                                                                                                                                                                                                              TTTGCTTGATCCAAGCCTTCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTATCCAGCGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAGGCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCATAAGGATGGTACTGCTATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGCAAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGGAACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAGCAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGAGCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGCCATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGCTGTTCCAAAGGCTATAATGCATTTTCTGGTGAA CCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB665179             [                                                                                                                                                                                                                                      ATCCAAGCCTTCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTAACCAGCGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAGGCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCCTAAGGATGGTACTGCTATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGCAAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGGAACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAGCAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGAGCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGCCATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGCTGTTCCAAAGGCTATAATGCATTTTCTGGTGAA CCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAAAAGGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB665205             [                                                                                                                                                                                                                                                          AATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTAACCAGCGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAGGCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCCTAAGGATGGTACTGCTATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGCAAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGGAACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAGCAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGAGCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGCCATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGCTGTTCCAAAGGCTATAATGCATTTTCTGGTGAA CCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGGAGGCAGCGTATACAAGAAACACTCCAAGTTC TGAACAAGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF327172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCAAGCAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGAGCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGCCATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGCTGTTCCAAAGGCTATAATGCATTTTCTGGTGAA CCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGGACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGCCCTGCTGAATATGCTACTGGCCTGCCAAAAATCCATGGTCTCAGCAATGGCGACCCCAGCATCATTTACGCATCCTCGCCTAACCACAATCGAAAGAAAGCATCTCACGAAGATNCAACATGGGTCGGTAGCGTCATATAGTTCGACTTCCTATCCAGATGCTAATGGTGGGCTTCTTTCCACTTGATCTTGATCAATTTC                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CF327173             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCATGGTTTCAGCAATGGGGACCCCAGCATCATTTAGGCATCTTCGCTTAACCACAATCGAAAGAAAGCTTTTCACGAAGAT CAACATGGGTCGGTAGCGTCATATAGTTCGACTTCCTATCCAGATGCTAATGGTGGGTTTTTTTCCACTTGATTTTGATCAATTTTTCCTATCATTTTCAAGTGACGTGCTTCAGTTTTGTCCTGTAAATTCAATTTTTTGTTAGTGGGCTATTTTTTTTTGCAACTGGCAGTTATTTTTGGTGCCGCCCCTTGATTTTGTAATTTAGCAGTTGCACTGAAATAGCAGGACTACAGGAGCCCAAGTACATTCATAGCCAACAGGGGCAATGGAATGGTGGCTGTGTAGATTAACAATGTAACTAGCCCCTTATATCATTTTGCCTTTTTTGTACTTTTGAAAAGCCAGAGCGGGAACGGCATATTACGAATAACTTGCAATCACAAAGTTATTTTACTGCAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12392#0 GGAAGGGAAAAATAAAGTGTCAACAGATGAACTATCTGGTGGAGCAAGAATCCACTACAT TTTTCAGTCAATTTTTGTCAAGAGCTTGGAGGAAGTGGACCCCTGTAAGAGCATAACTGA TGAAGATATCCGTACAGCCATACAGAATTCTGACGGTCCAAAGGGTCCTATGTTTCTGCC AGAGTTGCCGTTTGAGATTCTTGTGCGAAGGCAAATAAGTCGTTTGCTTGATCCAAGCCT TCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTAACCAG CGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTT GAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGA TTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAG GCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCCTAAGGATGGTACTGC TATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGC AAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGG AACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAG CAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGA GCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGC CATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGC TGTTCCAAAGGCTATAATGCATTTTCTGGTGAACCACACAAAGCGTGAGCTGCATAATGT TTTAATCCGGAAACTGTACAGAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGA AGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAG GACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGCCCTGCTGA ATATGCTACTGGCCTGCCAAAAATCCATGGTCTCAGCAATGGCGACCCCAGCATCATTTA CGCATCCTCGCCTAACCACAATCGAAAGAAAGCATCTCACGAAGATCAACATGGGTCGGT AGCGTCATATAGTTCGACTTCCTATCCAGATGCTAATGGTGGGCTTCTTTCCACTTGATC TTGATCAATTTCTCCTATCATTTTCAAGTGACGTGCTTCAGTTTTGTCCTGTAAATTCAA TTTTTTGTTAGTGGGCTATTTTTTTCTGCAACTGGCAGCTATTTCTGGTGCCGCACCTTG ATCTTGTAATCTAGCAGTTGCACTGAAATAGCAGGACTACAGGAGCCCAAGTACATTCAT AGCCAACAGGGGCAATGGAATGGTGGCTGTGTAGATTAACAATGTAACTAGCCCCTTATA TCATTTTGCCTTTTTTGTACTTTTGAAAAGCCAGAGCGGGAACGGCATATTACGAATAAC TTGCAATCACAAAGTTATTTTACTGCAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence
                              [CCTAATTGGTTGGGCCTTCCTTTCCCACCTTGATCCTTGATCCAATTTCCTCCCTATCCACTTTTCCAAGTGACCGTGGCTTCCACGTTTTGGTCCCTGTAAATGTCCAATTTTTTGGTTAGTGGGCTATTGTTTTTCTGCCAACTGGCACGCTATTTCCTGGTCCCGCCACCCTTGATCTGGTAATCCTACGCAGTTGCACCTGAAATAGCAGGACTACACGGAGCCCAAGTACACTTCATAGCCCAACACGGGGCCAATGGAATGGTGGCTGTGTAGATTAACAATGTAACTAGCCCCTTATATCATTTTCCCTTTTTTGTACTTCTGAGAAGCCAGAACGGGAACGGCATATTACGAATAACTTGCAATCACAAGCTACTTTACTCCAAAAAAAAAA]

[+] EMBL BI812988             [CCTAATTGGTTGGGCCTTCCTTTCCCACCTTGATCCTTGATCCAATTTCCTCCCTATCCACTTTTCCAAGTGACCGTGGCTTCCACGTTTTGGTCCCTGTAAATGTCCAATTTTTTGGTTAGTGGGCTATTGTTTTTCTGCCAACTGGCACGCTATTTCCTGGTCCCGCCACCCTTGATCTGGTAATCCTACGCAGTTGCACCTGAAATAGCAGGACTACACGGAGCCCAAGTACACTTCATAGCCCAACACGGGGCCAATGGAATGGTGGCTGTGTAGATTAACAATGTAACTAGCCCCTTATATCATTTTCCCTTTTTTGTACTTCTGAGAAGCCAGAACGGGAACGGCATATTACGAATAACTTGCAATCACAAGCTACTTTACTCCAAAAAAAAAA]


>consensus_12392#1 CCTAATTGGTTGGGCCTTCCTTTCCCACCTTGATCCTTGATCCAATTTCCTCCCTATCCA CTTTTCCAAGTGACCGTGGCTTCCACGTTTTGGTCCCTGTAAATGTCCAATTTTTTGGTT AGTGGGCTATTGTTTTTCTGCCAACTGGCACGCTATTTCCTGGTCCCGCCACCCTTGATC TGGTAATCCTACGCAGTTGCACCTGAAATAGCAGGACTACACGGAGCCCAAGTACACTTC ATAGCCCAACACGGGGCCAATGGAATGGTGGCTGTGTAGATTAACAATGTAACTAGCCCC TTATATCATTTTCCCTTTTTTGTACTTCTGAGAAGCCAGAACGGGAACGGCATATTACGA ATAACTTGCAATCACAAGCTACTTTACTCCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12392#0      GGAAGGGAAAAATAAAGTGTCAACAGATGAACTATCTGGTGGAGCAAGAATCCACTACAT 60
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      TTTTCAGTCAATTTTTGTCAAGAGCTTGGAGGAAGTGGACCCCTGTAAGAGCATAACTGA 120
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      TGAAGATATCCGTACAGCCATACAGAATTCTGACGGTCCAAAGGGTCCTATGTTTCTGCC 180
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      AGAGTTGCCGTTTGAGATTCTTGTGCGAAGGCAAATAAGTCGTTTGCTTGATCCAAGCCT 240
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      TCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGATTAGCCGTGGTTGCTTAACCAG 300
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      CGAGCTGCAGAAATACCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTT 360
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      GAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGATGGA 420
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      TTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTGTTGAGCTTGCTAG 480
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      GCAAGAAATTTTACCTCCCAAAGCACCAACCTCTGTAACGATTCCTAAGGATGGTACTGC 540
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      TATTAGTCCTGAGATACAATTAACATCTGACAGAAGTCAAAAGTCACGTGCTATTTTTGC 600
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      AAGAGATGCTACTAGAGGAGCCACCTCTGATCAGGGAGTGCAGCCTGATGCTGATACAGG 660
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      AACAAGTGTGGCAGGCAGAAATCAGAGGGGTCACTCACTGGTTGCTGGGAGTTCATCAAG 720
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      CAAGTCAGTTGCACGAGTTCACAGCCTAGATAACCTTATCTCTATCATCCAGTTAAGAGA 780
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      GCCACCCATCACTTTGAAGCCATCAGAAAACCAGCCTGCACAGGATGCAACAGAGGTAGC 840
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      CATTGTGAAACTATTGATCAAATCGTACTATGACATTGTCAGAAAGAGTATTGAAGATGC 900
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      TGTTCCAAAGGCTATAATGCATTTTCTGGTGAACCACACAAAGCGTGAGCTGCATAATGT 960
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      TTTAATCCGGAAACTGTACAGAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGA 1020
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      AGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAG 1080
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      GACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGCCCTGCTGA 1140
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      ATATGCTACTGGCCTGCCAAAAATCCATGGTCTCAGCAATGGCGACCCCAGCATCATTTA 1200
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      CGCATCCTCGCCTAACCACAATCGAAAGAAAGCATCTCACGAAGATCAACATGGGTCGGT 1260
consensus_12392#1      ------------------------------------------------------------
                                                                                   

consensus_12392#0      AGCGTCATATAGTTCGACTTCCTATCCAGATGCTAATGGTGGGCTTCTTTCCACTTGATC 1320
consensus_12392#1      --CCTAAT-TGGTTGGGCCTTCCTTTCCCACCTTGATC-----CTTGATCCAATTTCCTC 52
                         * * ** * *** * * * *  * *  *   * **      ***  * * * **  **

consensus_12392#0      TTGATCAATTTCTCCTATCATTTTCAAGTGACGTGCTTCAGTTTTGTCCTGTAAAT--TC 1378
consensus_12392#1      CCTATCCACTTTTCCAAGTGACCGTGGCTTCCACGTTTTGGTC----CCTGTAAATGTCC 108
                          *** * ** *** *           *  *  * **  **     *********   *

consensus_12392#0      AATTTTTTG-TTAGTGGGCTATT-TTTTTCTGC-AACTGGCA-GCTATTTC-TGGTGCCG 1433
consensus_12392#1      AATTTTTTGGTTAGTGGGCTATTGTTTTTCTGCCAACTGGCACGCTATTTCCTGGTCCCG 168
                       ********* ************* ********* ******** ******** **** ***

consensus_12392#0      CA--CCTTGATCTTGTAATCTA--GCAGTTGCAC-TGAAATAGCAGGACTACA-GGAGCC 1487
consensus_12392#1      CCACCCTTGATCTGGTAATCCTACGCAGTTGCACCTGAAATAGCAGGACTACACGGAGCC 228
                       *   ********* ******    ********** ****************** ******

consensus_12392#0      CAAGTACA-TTCATAGCCAA---CAGGGGCAATGGAATGGTGGCTGTGTAGATTAACAAT 1543
consensus_12392#1      CAAGTACACTTCATAGCCCAACACGGGGCCAATGGAATGGTGGCTGTGTAGATTAACAAT 288
                       ******** ********* *   * *** *******************************

consensus_12392#0      GTAACTAGCCCCTTATATCATTTTGCCTTTTTTGTACTTTTGAAAAGCCAGAGCGGGAAC 1603
consensus_12392#1      GTAACTAGCCCCTTATATCATTTTCCCTTTTTTGTACTTCTGAGAAGCCAGAACGGGAAC 348
                       ************************ ************** *** ******** *******

consensus_12392#0      GGCATATTACGAATAACTTGCAATCACAAAGTTATTTTACTGCAAAAAAAAAAAAAAAAA 1663
consensus_12392#1      GGCATATTACGAATAACTTGCAATCACAA-GCTACTTTACTCCAAAAAAAAAA------- 400
                       ***************************** * ** ****** ***********       

consensus_12392#0      AAAAAA 1669
consensus_12392#1      ------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)