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Oryza sativa
cluster # 12396 cluster # 12396       Sequences # 10       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12396#0 length = 771 sequences # 10  

consensusID : consensus_12396#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 771
fasta sequence
                              [CCTCTCCTGCTGCGTGCGTCCCCAAAT-CAGGAGTCCT-CCAA-CCTCGCCACCGG-GCCGTCCG-CCCATCTCCGACGCCG-CT--CCCCGAAGCGAAGCAGAGATGGATACATCAGGACCTGCAGCATTCGTCAATGGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC-GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA-TTTGTTCCTGTAGAGGTCGGCAT-CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG-CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTATAAACTCCGGTGCATCTTGATGAAGTGAACTAGTATGATGCTTTCTGATGAAAAA]

[+] EMBL AA750659             [CCTCTCCTGCTGCGTGCGTCCCCAAATACAGGAGTCCT CCAA CCTCGCCACCGG GCCGTCCG CCCATCTCCGACGCCG CT  CCCCGAAGCGAAGCAGAGATGGATACATCAGGACCTGCAGCATTCGTCAATGGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGT CAAG CCAGCGCGAGGAAGGC GGTTGCTTATCGGGCAGT CA CGATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK058837             [     CCTGCTGCGTGCGTCCCCAAAT CAGGAGTCCTCCCAACCCTCGCCACCGGCGCCGTCCGCCCCATCTCCGACGCCGCCTCCCCCCGAAGCGAAGCAGAGATGGATACATCAGGACCTGCAGCATTCGTCAATGGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGT                                                                  ]
[+] EMBL CA764860             [                                                                                                                     GGACCTGCAGCATTCGTCAATGGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAACCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGT                                                                ]
[+] EMBL BI797431             [                                                                                                                                          GGAGAGATTCTGAAGATGTTC TC GCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAA GCGGGTTGCTTATC GGCAGTCCACCGAT GTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCC ATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCC AC AAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGC AAGC AACC AAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTAAAAA                                                   ]
[+] EMBL AU184015             [                                                                                                                                         ccGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGATTTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTNTGNCAACAAAGCATGTCTNATGTTCATGATTTCTCTAGCCTTTAAGATCCGc                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSR06181A            [                                                                                                                                                     GAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCNCGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAATNAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGCCATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGT                                                                                                                                                                                                                           ]
[+] EMBL AU031699             [                                                                                                                                                                                                                                                                                             GTGGAGATTATTGGGATCGCTGAACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGNCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCATCCACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTATGCTCTCCGGTGCATCTTGATGAAGTGAACTAGTATGATGCTTTCTGATGAAAAA]
[+] EMBL AU077567             [                                                                                                                                                                                                                                                                                                                                    CGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTAAAAAaaa                                                ]
[+] EMBL BI795057             [                                                                                                                                                                                                                                                                                                                                                TGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACC AAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTATAAAaaaaaaa                                            ]
[+] EMBL AU184016             [                                                                                                                                                                                                                                                                                                                                                             GTGAAAACTTCGGATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTNTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTATGCTCTCCGGTGCATCTTGATGAAGTGAACTAGTATGATGCTTTCTGATGAAAAA]


>consensus_12396#0 CCTCTCCTGCTGCGTGCGTCCCCAAATCAGGAGTCCTCCAACCTCGCCACCGGGCCGTCC GCCCATCTCCGACGCCGCTCCCCGAAGCGAAGCAGAGATGGATACATCAGGACCTGCAGC ATTCGTCAATGGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCA AGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAAC CATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGA ACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTCGATCCTGC ACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGATTTGTTCCTGTAGAG GTCGGCATCACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCT AGCTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGG GTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGC TTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTG TGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTATAAA CTCCGGTGCATCTTGATGAAGTGAACTAGTATGATGCTTTCTGATGAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)