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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1608 fasta sequence
[AGAGAGAGAGAGAGTTGTTTTACTATTTAAAAATTGTGGGTGGCGAGAGAGAGAGAGAGAGGCGGAGGCGGCGACAATCTCCGGCGAAATCGTCGGCGGAGGCGGTGGAGATGTCGCTGCGGCGGCAGTGTGGGAGGGGGAAGGTGCGGTTGTTTCGTCCCGTCGCGCCGACGGCGGAATCGGCGGTGGAGGCAGCGGAATCTGCGTGGAGGCGGCGTTTTTTCTCTCCACATCGTGCTTGCAGTTGCGGGGGGAAGTGAAGGCTGCGGCTTAGGTGGTTTTCTCTCCACCAAATCTGGCGCCCGTGCGGTGTTAGTTCGTCCTCTCCGTGGAGCTCCTCTGCGTCCTCTCGGCGAGTGCAAAGTTTGTGGTGGTGGATCTCCGGCTTGATTTGAAGAGATCGAGGTACATTCAGAGAATAGAGGCTGCAGGTAGCAGGGGGGAGAGCATGCATGTCAGCATGTATATGCATGCATGCTACTGATCAGTGGTGACAGGCAGATGAGTGCTGACCGATCGATTGATCCCTTGATTGGCTAATCTATGTCGTCTTGGATTGGCTAATCCAATGTGATTTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCCCTAGTCATTGATGTTATTACCTTTTTTTTTTTGCAAATATTGTGGCATGTCTAGTAACATTTTCCTCTAGTAGCAAATAATGGTCGTCTCAAAATGTTCCTTAAGTAACACATTTGATTTATTGAATTACATCTAGTCTAGTTAAAACTTACTTTTTCCCGTGGCATGTGAGTAACATTTTGAGAACAATGAAATTAAGTTTGCAATTTTTTTGTACTTCCTACTAGTTGTTAAGTTACTTCCAAAATGTACTGACTTACTTCTAAACACATAAATGTTACTTTCTACTAGTTGTTTAGTTGTAATTGGTTAGATTTTGGTGAAACTAATAGTCAAAATGATTTTCCAGGAATAGCTAGGAAGAAATCCCATGTAACGAAAGGCGCGTTGGACAAACTAGAGTCAAGTCAGAAAAAAAGGAGTGTATCGCAACGCAGGAAGAAGAGAGATCATGGTGGAGATGATGCAACGCAACCTCCTCCAAAAAGGAGTAGAACAAAGTACTAGAAGAGAAAGAGAGGCAACTAGGAGGAATGCATCATGTTGTGTACACATACCAGCAGCACTTGAAAAGAAATTTATTCGATATACGAAGGAAGTCAGAAAGGGAGACAGATTCATAGTATTCGTATCTCGGGGAAGACAGGATTCATAGAATTCATTTCTCACAGAAGACAAAAAGAACCTAAAAATTCTCTAGCCACAGCTACGTTCGGGATCGACGCTGGTCCGGATTTGTTAGATTGGAGGGGGGGTGAGGCGCGTAGCGCGCTTCCTTTAGGTGGGCCCACGCTAGCTGTCCCACGCCAAGCACGGTGTGCGTGGCACGACGCGCGCGCGGCTTTCCTTTTTTTGTCAGAGGCGCGCGCGCTAAAAAGGAAACCGTGTTTTCCTTTTTTTTGTCAGGAGCGTCGCGCGTTAGCGCTATCGCGATAGCGATCTCGTTGTAGTCTCGTCCATATATGACATTTCTTAACTTAGAAAACAGTTCACTTT]
[+] EMBL AK106713 [AGAGAGAGAGAGAGTTGTTTTACTATTTAAAAATTGTGGGTGGCGAGAGAGAGAGAGAGAGGCGGAGGCGGCGACAATCTCCGGCGAAATCGTCGGCGGAGGCGGTGGAGATGTCGCTGCGGCGGCAGTGTGGGAGGGGGAAGGTGCGGTTGTTTCGTCCCGTCGCGCCGACGGCGGAATCGGCGGTGGAGGCAGCGGAATCTGCGTGGAGGCGGCGTTTTTTCTCTCCACATCGTGCTTGCAGTTGCGGGGGGAAGTGAAGGCTGCGGCTTAGGTGGTTTTCTCTCCACCAAATCTGGCGCCCGTGCGGTGTTAGTTCGTCCTCTCCGTGGAGCTCCTCTGCGTCCTCTCGGCGAGTGCAAAGTTTGTGGTGGTGGATCTCCGGCTTGATTTGAAGAGATCGAGGTACATTCAGAGAATAGAGGCTGCAGGTAGCAGGGGGGAGAGCATGCATGTCAGCATGTATATGCATGCATGCTACTGATCAGTGGTGACAGGCAGATGAGTGCTGACCGATCGATTGATCCCTTGATTGGCTAATCTATGTCGTCTTGGATTGGCTAATCCAATGTGATTTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCCCTAGTCATTGATGTTATTACCTTTTTTTTTTTGCAAATATTGTGGCATGTCTAGTAACATTTTCCTCTAGTAGCAAATAATGGTCGTCTCAAAATGTTCCTTAAGTAACACATTTGATTTATTGAATTACATCTAGTCTAGTTAAAACTTACTTTTTCCCGTGGCATGTGAGTAACATTTTGAGAACAATGAAATTAAGTTTGCAATTTTTTTGTACTTCCTACTAGTTGTTAAGTTACTTCCAAAATGTACTGACTTACTTCTAAACACATAAATGTTACTTTCTACTAGTTGTTTAGTTGTAATTGGTTAGATTTTGGTGAAACTAATAGTCAAAATGATTTTCCAGGAATAGCTAGGAAGAAATCCCATGTAACGAAAGGCGCGTTGGACAAACTAGAGTCAAGTCAGAAAAAAAGGAGTGTATCGCAACGCAGGAAGAAGAGAGATCATGGTGGAGATGATGCAACGCAACCTCCTCCAAAAAGGAGTAGAACAAAGTACTAGAAGAGAAAGAGAGGCAACTAGGAGGAATGCATCATGTTGTGTACACATACCAGCAGCACTTGAAAAGAAATTTATTCGATATACGAAGGAAGTCAGAAAGGGAGACAGATTCATAGTATTCGTATCTCGGGGAAGACAGGATTCATAGAATTCATTTCTCACAGAAGACAAAAAGAACCTAAAAATTCTCTAGCCACAGCTACGTTCGGGATCGACGCTGGTCCGGATTTGTTAGATTGGAGGGGGGGTGAGGCGCGTAGCGCGCTTCCTTTAGGTGGGCCCACGCTAGCTGTCCCACGCCAAGCACGGTGTGCGTGGCACGACGCGCGCGCGGCTTTCCTTTTTTTGTCAGAGGCGCGCGCGCTAAAAAGGAAACCGTGTTTTCCTTTTTTTTGTCAGGAGCGTCGCGCGTTAGCGCTATCGCGATAGCGATCTCGTTGTAGTCTCGTCCATATATGACATTTCTTAACTTAGAAAACAGTTCACTTT]
consensusID : consensus_12419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1454 fasta sequence
[CCTCCCCTCCTCGATTCCCCGTCTCCTCCGCGTGAGCTCGCCGGAGCACCGCCGGCCGATCCCCCCCACCCCCGCCACGCGAGCAGCGCCGCTCGCGCGGCCTGCTGCCCCCGCCTCACCCTCGCCGGTGAACGGCGCATGCCCCCCCGACGTTAGGTGTCGCGCCTGGAGACGCGGAGATGGATCCGATGGATATCGTGGGGAAGTCCAAGGAGGACGTCTCCCTCCCCAAATCAACAATGTTTAAGATTATAAAGGAGATGTTGCCCCCTGATGTTCGAGTGGCAAGAGATGCACAAGATCTTCTTGTGGAATGCTGTGTAGAGTTCATCAACCTCCTATCTTCTGAATCCAATGAAGTTTGCAGCCGAGAGGACAAGAAAACTATTGCTCCTGAGCATGTTCTTAGAGCTCTGCAGGATCTTGGCTTTAGGGAGTACATTGAAGAGGTTCAAGCGGCCTACGAACACCATAAGCATGATACCCTGGATTCTCCAAAAGCAAGCAAATTCACTGGTGTGGAGATGACAGAGGAACAAGCTGTAGCTGAGCAACAGAGGATGTTTGCTGAGGCCCGAGCAAGGATGAACAATGGTGCCGCCAAACCGAAGGAGCCAGAACCTGAAGCGCAGCAACAAACACAACAGCCACCACAGCCTCAGCTGCACCCTCAACCACAGCAACCCCTGCAGCCTCAACTTCAGCTCCATCCTCAACCACAACAACAGCCCTCACAGCTACATCCTCAACAGCTGCTGCATCCTCAATCGCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCTCCACAGCTGCAACCGCAACCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGCTGCAGCCGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGCTGCAGCTGCAATCTCAGCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCAGCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGTTTTAGGTTTCCATGCTTCATGTACAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCTCTAGTCACTGATGTTATTACTTTTCCAAACACCCTTTCTCTGACTCTATGACTGTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGGACTCCATTAGCAGTGTAACTTGACTTTTGCCGATGGCGATGGTGATTTCAGTGACTTGTTAAT------TGCAA--TGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA]
[+] EMBL CB666464 [CCTCCCCTCCTCGATTCCCCGTCTCCTCCGCGTGAGCTCGCCGGAGCACCGCCGGCCGATCCCCCCCACCCCCGCCACGCGAGCAGCGCCGCTCGCGCGGCCTGCTGCCCCCGCCTCACCCTCGCCGGTGAACGGCGCATGCCCCCCCGACGTTAGGTGTCGCGCCTGGAGACGCGGAGATGGATCCGATGGATATCGTGGGGAAGTCCAAGGAGGACGTCTCCCTCCCCAAATCAACAATGTTTAAGATTATAAAGGAGATGTTGCCCCCTGATGTTCGAGTGGCAAGAGATGCACAAGATCTTCTTGTGGAATGCTGTGTAGAGTTCATCAACCTCCTATCTTCTGAATCCAATGAAGTTTGCAGCCGAGAGGACAAGAAAACTATTGCTCCTGAGCATGTTCTTAGAGCTCTGCAGGATCTTGGCTTTAGGGAGTACATTGAAGAGGTTCAAGCGGCCTACGAACACCATAAGCATGATACCCTGGATTCTCCAAAAGCAAGCAAATTCACTGGTGTGGAGATGACAGAGGAACAAGCTGTAGCTGAGCAACAGAGGATGTTTGCTGAGGCCCGAGCAAGGATGAACAATGGTGCCGCCAAACCGAAGGAGCCAGAACCTGAAGCGCAGCAACAAACACAACAGCCACCACAGCCTCAGCTGCACCCTCAACCACAGCAACCCCTGCAGCCTCAACTTCAGCTCCATCCTCAACCACAACAACAGCCCTCACAGCTACATCCTNCACAG ]
[+] EMBL AF464902 [ CGCGCCTGGAGACGCGGAGATGGATCCGATGGATATCGTGGGGAAGTCCAAGGAGGACGTCTCCCTCCCCAAATCAACAATGTTTAAGATTATAAAGGAGATGTTGCCCCCTGATGTTCGAGTGGCAAGAGATGCACAAGATCTTCTTGTGGAATGCTGTGTAGAGTTCATCAACCTCCTATCTTCTGAATCCAATGAAGTTTGCAGCCGAGAGGACAAGAAAACTATTGCTCCTGAGCATGTTCTTAGAGCTCTGCAGGATCTTGGCTTTAGGGAGTACATTGAAGAGGTTCAAGCGGCCTACGAACACCATAAGCATGATACCCTGGATTCTCCAAAAGCAAGCAAATTCACTGGTGTGGAGATGACAGAGGAACAAGCTGTAGCTGAGCAACAGAGGATGTTTGCTGAGGCCCGAGCAAGGATGAACAATGGTGCCGCCAAACCGAAGGAGCCAGAACCTGAAGCGCAGCAACAAACACAACAGCCACCACAGCCTCAGCTGCACCCTCAACCACAGCAACCCCTGCAGCCTCAACTTCAGCTCCATCCTCAACCACAACAACAGCCCTCACAGCTACATCCTCAACAGCTGCTGCATCCTCAATCGCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCTCCACAGCTGCAACCGCAACCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGCTGCAGCCGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGCTGCAGCTGCAATCTCAGCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCAGCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGTTTTAGGTTTCCATGCTTCATGTACAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCTTTTGTCACTGATGTTATTACTTTTCCAAACACCCTTTCTCTGACTCTATGACTGTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGGACTCCATTAGCAGTGTAACTTGACTTTTTCCGGTGGCGGTTGTGGTTTCCGTGGCTT TT T TAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA]
[+] EMBL AK061580 [ TTGCAGCCGAGAGGACAAGAAAACTATTGCTCCTGAGCATGTTCTTAGAGCTCTGCAGGATCTTGGCTTTAGGGAGTACATTGAAGAGGTTCAAGCGGCCTACGAACACCATAAGCATGATACCCTGGATTCTCCAAAAGCAAGCAAATTCACTGGTGTGGAGATGACAGAGGAACAAGCTGTAGCTGAGCAACAGAGGATGTTTGCTGAGGCCCGAGCAAGGATGAACAATGGTGCCGCCAAACCGAAGGAGCCAGAACCTGAAGCGCAGCAACAAACACAACAGCCACCACAGCCTCAGCTGCACCCTCAACCACAGCAACCCCTGCAGCCTCAACTTCAGCTCCATCCTCAACCACAACAACAGCCCTCACAGCTACATCCTCAACAGCTGCTGCATCCTCAATCGCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCTCCACAGCTGCAACCGCAACCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGCTGCAGCCGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGCTGCAGCTGCAATCTCAGCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCAGCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGTTTTAGGTTTCCATGCTTCATGTACAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCTCTAGTCACTGATGTTATTACTTTTCCAAACACCCTTTCTCTGACTCTATGACTGTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGGACTCCATTAGCAGTGTAACTTGACTTTTGCCGATGGCGATGGTGATTTCAGTGACT ]
[+] EMBL CA758075 [ CAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCTCCACAGCTGCAACCGCAACCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGCTGCAGCCGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGCTGCAGCTGCAATCTCAGCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCAGCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGCTTTAGGTTTCCATGCTTCATGTACAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCTCTAGTCACTGATGTTACTACTTTTCCAAACACCCTTTCTCTGACTCTATGACTGTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGGACTCCATTAGCAGTGTAACTTGACTTTTGCCGATGGCGATGGTGATTTCAGTGACTTGTTAAT TGCAA TGTAAAAAAAAA ]
[+] EMBL BM038855 [ ACCGCA CAGCCCCCACAGCT CAGCTGCAATCTCAGCTCCACCCACAACCGCAGCAGCCCCCACA CT CA CC CAACCTCAGCTCCATCAGCAACC CA CCGCAGGCAGA CTGCAATCACAGTCACAACCACAAACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGCTTTAGGTTTCCATGCTTCATGTAC ATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCTCTAGTCCCTGATGTTACTACTTTTCCCAACACCCTTTCTCTGACTCTATGACTGTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGGACTCCATTAGCAGTGTAACTTGACTTTTGCCGATGGCGATGGTGATTTCAGTGACTTGTTAATCCCAGGTGCCATTTGTCTCAAAAAAAAA ]
consensusID : consensus_12419#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1198 fasta sequence
[ACTTTTGCTTCTACATGATTCAAACATCAAGTCTTGAAAAGCTCGAATTTTTTTTTTTGTAAATGAAAAAAATATGTATAGAACCAGCTGAGAACCTTGTTTTAACCAAACACTCAGGCTCCAGGTTCCGGAACCCTGCAGTGTAAACCTATTTCTGGCTGATCTACCTTTGAAATAATTGTTTTCCAACTAGTAGTTGGTACTCGCCAATATGTGAAATCTCCAGACTTATTTCAGTTTTTTTTTTCTTTTTGGCAGGATCTTGGCTTTAGGGAGTACATTGAAGAGGTTCAAGCGGCCTACGAACACCATAAGCATGATACCCTGGATTCTCCAAAAGCAAGCAAATTCACTGGTGTGGAGATGACAGAGGAACAAGCTGTAGCTGAGCAACAGAGGATGTTTGCTGAGGCCCGAGCAAGGATGAACAATGGTGCCGCCAAACCGAAGGAGCCAGAACCTGAAGCGCAACAACAAACACAACAGCCACCACAGCCTCAGCTGCACCCTCAACCACAGCAACCCCTGCAGCCTCAACTTCAGCTCCATCCTCAACCACAACAACAGCCCTCACAGCTACATCCTCAACAGCTGCTGCATCCTCAATCGCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCTCCACAGCTGCAACCGCAACCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGCTGCAGCCGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGCTGCAGCTGCAATCTCAGCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCAGCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGTTTTAGGTTTCCATGCTTCATGTACAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCTCTAGTCACTGATGTTATTACTTTTCCAAACACCCTTTCTCTGACTCTATGACTGTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGGACTCCATTAGCAGTGTAACTTGACTTT]
[+] EMBL AK073566 [ACTTTTGCTTCTACATGATTCAAACATCAAGTCTTGAAAAGCTCGAATTTTTTTTTTTGTAAATGAAAAAAATATGTATAGAACCAGCTGAGAACCTTGTTTTAACCAAACACTCAGGCTCCAGGTTCCGGAACCCTGCAGTGTAAACCTATTTCTGGCTGATCTACCTTTGAAATAATTGTTTTCCAACTAGTAGTTGGTACTCGCCAATATGTGAAATCTCCAGACTTATTTCAGTTTTTTTTTTCTTTTTGGCAGGATCTTGGCTTTAGGGAGTACATTGAAGAGGTTCAAGCGGCCTACGAACACCATAAGCATGATACCCTGGATTCTCCAAAAGCAAGCAAATTCACTGGTGTGGAGATGACAGAGGAACAAGCTGTAGCTGAGCAACAGAGGATGTTTGCTGAGGCCCGAGCAAGGATGAACAATGGTGCCGCCAAACCGAAGGAGCCAGAACCTGAAGCGCAACAACAAACACAACAGCCACCACAGCCTCAGCTGCACCCTCAACCACAGCAACCCCTGCAGCCTCAACTTCAGCTCCATCCTCAACCACAACAACAGCCCTCACAGCTACATCCTCAACAGCTGCTGCATCCTCAATCGCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCTCCACAGCTGCAACCGCAACCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGCTGCAGCCGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGCTGCAGCTGCAATCTCAGCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCAGCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGTTTTAGGTTTCCATGCTTCATGTACAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCTCTAGTCACTGATGTTATTACTTTTCCAAACACCCTTTCTCTGACTCTATGACTGTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGGACTCCATTAGCAGTGTAACTTGACTTT]
[+] EMBL BM418548 [ AACA CTGCTGCATCCTCAATCGCACCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACA CAGCCTCCACAGCTGCAACCGCAACCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGCTGCAGCCGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGCTGCAGCTGCAATCTCAGCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCAGCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCAC AACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGCTTTAGGTTTCCATGCTTCATGTACAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAAaaaaa ]
[+] EMBL CB000606 [ gaggaTCAGGTCCACCCTCAACCACAGCAGCCTCCACAGCTGCAACCGCAACCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGCTGCAGCCGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGCTGCAGCTGCAATCTCAGCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCAGCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGTTTTAGGTTTCCATGCTTCATGTACAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCTCTAGTCACTGATGTTATTACTTTTCCAAACACCCTTTCTCTGACTCTATGACTGCAGTAGTATCATGGCATGTATGATGCCCTGTCAAAAGGGACTCCATTAGCAGTGTA ]
consensusID : consensus_12419#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence
[CTGCATCCTCAACAGCTGCTGCTGCATCCTCAATCGCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCTCCACAGCTGCAACCGCAAGCCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGGCTGCAGCCGCAATCTCAGCTCCCCCACAACGCAGCAGTTTTGATGTCTGCAGCGTCAATCTCA]
[+] EMBL AA750052 [CTGCATCCTCAACAGCTGCTGCTGCATCCTCAATCGCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCTCCACAGCTGCAACCGCAAGCCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGGCTGCAGCCGCAATCTCAGCTCCCCCACAACGCAGCAGTTTTGATGTCTGCAGCGTCAATCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12419#1 ----------------------------------------------------------CC 2
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 ------------------------------------------------------------
consensus_12419#0 AGAGAGAGAGAGAGTTGTTTTACTATTTAAAAATTGTGGGTGGCGAGAGAGAGAGAGAGA 60
consensus_12419#1 TCCCCTCCTCGATTCCCCGTCTCCTCCGCGTGAGCTCGCCGGAGCACCGCCGGCCGATCC 62
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 ------------------------------------------------------------
consensus_12419#0 GGCGGAGGCGGCGACAATCTCCGGCGAAATCGTCGGCGGAGGCGGTGGAGATGTCGCTGC 120
consensus_12419#1 CCCCCACCCCCGCCACGCGAGCAGCGCCGCTCGCGCGGCCTGCTGCCCCCGCCTCACCCT 122
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 ------------------------------------------------------------
consensus_12419#0 GGCGGCAGTGTGGGAGGGGGAAGGTGCGGTTGTTTCGTCCCGTCGCGCCGACGGCGGAAT 180
consensus_12419#1 CGCCGGTGAACGGCGCATGCCCCCCCGACGTTAGGTGTCGCGCCTGGAGACGCGGAGATG 182
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 -------------------------------------------ACTTTTGCTTCTACATG 17
consensus_12419#0 CGGCGGTGGAGGCAGCGGAATCTGCGTGGAGGCGGCGTTTTTTCTCTCCACATCGTGCTT 240
consensus_12419#1 GATCCGATGGATATCGTGGGGAAGTCCAAGGAGGACGTCTCCCTCCCCAAATCAACAATG 242
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 ATTCAAACATCAAGTCTTGAAAAGCTCGAATTTTTT-TTTTTGTAAATGAAAAAAATATG 76
consensus_12419#0 GCAGTTGCGGGGGGAAGTGAAGGCTGCGGCTTAGGTGGTTTTCTCTCCACCAAATCTGGC 300
consensus_12419#1 TTTAAGATTA--TAAAGGAGATGTTGCCCCCTGATGTTCGAGTGGCAAGAGATGCACAAG 300
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 TATAGAACCAGCTGAGAACCTTGTTTTAACCAAACACTCAGGCTCCAGGT----TCCGGA 132
consensus_12419#0 GCCCGTGCGGTGTTAGTTCGTCCTCTCCGTGGAGCTCCTCTGCGTCCTCT-----CGGCG 355
consensus_12419#1 ATCTTCTTGTGGAATGCTGTGTAGAGTTCATCAACCTCCTATCTTCTGAAT--CCAATGA 358
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 ACCCTGCAGTGTAAACCTATTTCTGGCTGATCTACCTTTGAAATAATTGTTTTCCAACTA 192
consensus_12419#0 AGTGCAAAGTTTGTGGTGGTGGATCTCCGGCTTGA-TTTGAAGAGATCGAGGTACATTCA 414
consensus_12419#1 --AGTTTGCAGCCGAGAGGACAAGAAAACTATTGCTCC---TGAGCATGTTCTTAGAGCT 413
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 GTAGTTGGTACTCGCCAATATGTGAAATCTCCAGACTTATTTCAGTTTTTTTTTTCTTTT 252
consensus_12419#0 GAGAATAGAGGCTGCAGGTAGCAGGGGGGAGAGCATGCATGTCAGCATGTATATGCAT-- 472
consensus_12419#1 CTGCAGGATCTTGGCTTTAGGGAGTACATTGAAGAGGTTCAAGCGGCCTACGAACACCAT 473
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 TGGCAGGATCTTGGCTTTAGGGAGTACATTGAAGAGGTTCAAGCGGCCTACGAACACCAT 312
consensus_12419#0 --GCATGCTACTGATCAGTGGTGACAGGCAGATGAGTGCTGACCGATCGATTGATCCCTT 530
consensus_12419#1 AAGCATGATACCCTGGATTCTCCAAAAGCAAGCAAATTCACTGGTGTGGAGATGACAGAG 533
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 AAGCATGATACCCTGGATTCTCCAAAAGCAAGCAAATTCACTGGTGTGGAGATGACAGAG 372
consensus_12419#0 GATTG-GCTAATCTATGTCGTCTTGGATTGGCTAATCCAATGTGATTTTCAGTTACCATG 589
consensus_12419#1 GAACAAGCTGTAGCTGAGCAACAGAGGATGTTTGCTGAGGCCCGAGCAAGGATGAACAAT 593
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 GAACAAGCTGTAGCTGAGCAACAGAGGATGTTTGCTGAGGCCCGAGCAAGGATGAACAAT 432
consensus_12419#0 TTGCTAATAATCTGAAGCTCTCCCTAGTCATTGATGTTATTACCTTTTTTTTTTTGCAAA 649
consensus_12419#1 GGTGCCGCCAAACCGAAGGAGCCAGAACCTGAAGCGCAGCAACAAACACAACAGCCACCA 653
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 GGTGCCGCCAAACCGAAGGAGCCAGAACCTGAAGCGCAACAACAAACACAACAGCCACCA 492
consensus_12419#0 TATTGTGGCATGTCTA-GTAACATTTTCCTCTAGTAGCAAATAATGGTCGTCTCAAAATG 708
consensus_12419#1 CAGCCTCAGCTGCACCCTCAACCACAGCAACCCCTGCAGCCTCAACTTCAGCTCCATCCT 713
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 CAGCCTCAGCTGCACCCTCAACCACAGCAACCCCTGCAGCCTCAACTTCAGCTCCATCCT 552
consensus_12419#0 TTCCTTAAGTAACACATTTGATTTATTGAATTACATCTAGTCTAGTTAAAACTT-ACTTT 767
consensus_12419#1 CAACCACAACAACAGCCCTCACAGCTACATCCTCAACA-GCTGCTGC---ATCCTCAATC 769
consensus_12419#3 ------------------------CTGCATCCTCAACA-GCTGCTGCTGCATCCTCAATC 35
consensus_12419#2 CAACCACAACAACAGCCCTCACAGCTACATCCTCAACA-GCTGCTGC---ATCCTCAATC 608
consensus_12419#0 TTCCCGTGGCATGTG-------AGTAACATTTTGAGAACAATGAAATTAAGTTTGCAATT 820
*** * * * ** * ****
consensus_12419#1 GCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCT----CCAC 825
consensus_12419#3 GCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCT----CCAC 91
consensus_12419#2 GCAGCAAACTCCGCAGCCTCAACCTCAGGTCCACCCTCAACCACAGCAGCCT----CCAC 664
consensus_12419#0 TTTTTGTACTTCCTA--CTAGTTGTTAAGTTACTTCCAAAATGTACTGACTTACTTCTAA 878
*** * * ** * * ** * ** * * * * *
consensus_12419#1 AGCTGCAACCGCAA-CCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAG--CTGCAGC 882
consensus_12419#3 AGCTGCAACCGCAAGCCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAGG-CTGCAGC 150
consensus_12419#2 AGCTGCAACCGCAA-CCTCAGCTTCTCCAGCAACCGCAGCTGCCCCAACAG--CTGCAGC 721
consensus_12419#0 ACACATAAATGTTACTTTCTACTAGTTGTTTAGTTGTAATTGGTTAGATTTTGGTGAAAC 938
* ** * * ** ** * * * * ** * ** * *
consensus_12419#1 CGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGC---TGCAGCTGCAATCTC 939
consensus_12419#3 CGCAATCTCAGCTCCCCC-ACAAC-GCAGCAGTTTTGATGTC---TGCAGCGTCAATCTC 205
consensus_12419#2 CGCAATCTCAGCTCCCCCCACAACCGCAGCAGCCCCCACAGC---TGCAGCTGCAATCTC 778
consensus_12419#0 TAATAGTCAAAATGATTTTCCAGGAATAGCTAGGAAGAAATCCCATGTAACGAAAGGCGC 998
* * * ** *** * * ** * * * * *
consensus_12419#1 A--GCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCA 997
consensus_12419#3 A----------------------------------------------------------- 206
consensus_12419#2 A--GCTCCACCCACAACCGCAGCAGCCCCCACAGCTGCAGCCGCAACCTCAGCTCCATCA 836
consensus_12419#0 GTTGGACAAACTAGAGTCAAGTCAGAAAAAAAGGAGTGTATCGCAACGCAGGAAGAAGAG 1058
consensus_12419#1 GCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTT 1057
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 GCAACCGCAGCCGCAGGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTT 896
consensus_12419#0 AGATCATGGTGGAGATGATGCAACGCAACCTCCTCCAAAAAGGAGTAGAACAAAGTACTA 1118
consensus_12419#1 GGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTA 1117
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 GGACAGTTCATGATTCAGATTCCATGTTGTGTAGCCTCAGTATAAGGAAAAGTTGGTGTA 956
consensus_12419#0 GAAGAGAAAGAGAGGCA-ACTAGGAGGAATGCATCATGTTGTGTACACATACCAGCAGCA 1177
consensus_12419#1 CTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGTTTTAGGTTTCCATGCTT 1177
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 CTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGTTTTAGGTTTCCATGCTT 1016
consensus_12419#0 CTTGAAAAGAAATTTATTCGATATACGAAGGAAGTCAGAAAGGGAGACAGATTCATAGTA 1237
consensus_12419#1 CATGTA-CAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTC 1236
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 CATGTA-CAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTC 1075
consensus_12419#0 TTCGTATCTCGGGGAAGACAGGATTCATAGAATTCATTTCTCACAGAAGACAAAAAGAAC 1297
consensus_12419#1 TCTCTAGTCACTGA--TGTTATTACTTTTCCAAACACCCTTTCTCTGACTCTAT--GACT 1292
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 TCTCTAGTCACTGA--TGTTATTACTTTTCCAAACACCCTTTCTCTGACTCTAT--GACT 1131
consensus_12419#0 CTAAAAATTCTCTAGCCACAGCTACGTTCGGGATCGACGCTGGTCCGGATTTGTTAGATT 1357
consensus_12419#1 GTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGGACTC-CATTAGCAGTGTAAC 1351
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 GTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGGACTC-CATTAGCAGTGTAAC 1190
consensus_12419#0 GGAGGGGGGGTGAGGCGCGTAGCGCGCTTCCTTTAGGTGGGCCCACGCTAGCTGTCCCAC 1417
consensus_12419#1 TTGACTTTTGCCGATGGCGATGGTGATTTCAGTGACTTGTTAATTGCAATGTAAAAAAAA 1411
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 TTGACTTT---------------------------------------------------- 1198
consensus_12419#0 GCCAAGCACGGTGTGCGTGGCACGACGCGCGCGCGGCTTTCCTTTTTTTGTCAGAGGCGC 1477
consensus_12419#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA----------------- 1454
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 ------------------------------------------------------------
consensus_12419#0 GCGCGCTAAAAAGGAAACCGTGTTTTCCTTTTTTTTGTCAGGAGCGTCGCGCGTTAGCGC 1537
consensus_12419#1 ------------------------------------------------------------
consensus_12419#3 ------------------------------------------------------------
consensus_12419#2 ------------------------------------------------------------
consensus_12419#0 TATCGCGATAGCGATCTCGTTGTAGTCTCGTCCATATATGACATTTCTTAACTTAGAAAA 1597
consensus_12419#1 -----------
consensus_12419#3 -----------
consensus_12419#2 -----------
consensus_12419#0 CAGTTCACTTT 1608
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||