These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 962 fasta sequence [TTTCCTGGAAGGAGTACAGAAAATCCAAGGCAAATATAGTTATTACAACAGATTGGAACATCTGTGATTTAAGTTGGGAAACGAAATATCTGAACTATTAAAAAATTGAAGTCATGAACATTTAGGAAATTTCTTTACTTTTTCAAGACATAAATATTGAATCTCCTCAGTAACTCCTATATGGGATACAGCAGCAATGCACAGTAATAAAAAAAACCAAAGCTAAAGTATTTAGAATGATATTGAGCATATTAACCTGTAGTAAAATTGTTTTATATATTATAGTAAGCTATTGACCCACTAAAGGGATACAATGTTTGCTCAGTCTCTGCTGAAATGAATATTGCAGTGATTCTTGTTATTGAATTGTGTTGTTTATGCAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGGAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGGTACCAGAACTAAAAACCCACCCTTTCTCTCATGAGAAATTTCATCATAGATCTGTAGCTTCTTAATCCATCATAAATCACAATCACTTTGATCCGTTCTGTTTCGAGTGCAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATG-TCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGG-AAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTGTCCGGGAAAAAA] [+] EMBL AK102288 [TTTCCTGGAAGGAGTACAGAAAATCCAAGGCAAATATAGTTATTACAACAGATTGGAACATCTGTGATTTAAGTTGGGAAACGAAATATCTGAACTATTAAAAAATTGAAGTCATGAACATTTAGGAAATTTCTTTACTTTTTCAAGACATAAATATTGAATCTCCTCAGTAACTCCTATATGGGATACAGCAGCAATGCACAGTAATAAAAAAAACCAAAGCTAAAGTATTTAGAATGATATTGAGCATATTAACCTGTAGTAAAATTGTTTTATATATTATAGTAAGCTATTGACCCACTAAAGGGATACAATGTTTGCTCAGTCTCTGCTGAAATGAATATTGCAGTGATTCTTGTTATTGAATTGTGTTGTTTATGCAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGGAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGGTACCAGAACTAAAAACCCACCCTTTCTCTCATGAGAAATTTCATCATAGATCTGTAGCTTCTTAATCCATCATAAATCACAATCACTTTGATCCGTTCTGTTTCGAGTGCAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATG TCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGG AAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAA ] [-] EMBL CF296072 [ GTTGCAAGATAAAAAAGATCAAGCGTGCAAAGTTCATGTGATATCTCTGTTAAAAGCCAAAGCGTTTTTGTGGCGATGTCTCGCTGTTTGTATTGGAGATATCTCCGTGTACTGATGCAAGGAAAGTAGCCTTTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTGTCCGGGAAAAAA] consensusID : consensus_12440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 685 fasta sequence [TCCTCCCTTTCCCATCCTGCCTCAAAGATAGGTTCTTGACGGGGGAAGGAAAGCTGCTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGCACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC-TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTATTCAGGAAAAAAAATGA] [+] EMBL CF296071 [TCCTCCCTTTCCCATCCTGCCTCAAAGATAGGTTCTTGACGGGGGAAGGAAAGCTGCTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGCACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTA ] [+] EMBL CF324575 [ TTTCCCATCCTGCCTCAAAGATAGGTTCTTGACGGGGGAAGGAAAGCTGCTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGCACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCT ] [+] EMBL AK105390 [ CATCCTGCCTCAAAGATAGGTTCTTGACGGGGGAAGGAAAGCTGCTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGCACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTATTCAGGAAATGAGATGA] [+] EMBL CF279337 [ GACGGGGGAAGGAAAGCTGTTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCGGGAAGCACGGAAATTATGTCTCATCAAAGGGAATCCAGGGTATGGTGTTGATCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTTTTTGCTTTGTCAAGAAAGTTAATGCTCGTGATTATGTGTTGTACTTGNCTCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTG AAAAGATCAAGCGTGCAATGTCATG ] [-] EMBL CF279336 [ TCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATTTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTTTTTTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTTTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTTTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCCCTATTCAGGAAAAAAAA ] [+] EMBL AU166254 [ GGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGNAAAATCACTATTCAGGAAAAAAA ] [+] EMBL OSS12926A [ GGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATC ] [+] EMBL AU096241 [ GAAG TTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCNAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCNTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGNAAAATCACTATTCAGGAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12440#0 TTTCCTGGAAGGAGTACAGAAAATCCAAGGCAAATATAGTTATTACAACAGATTGGAACA 60 consensus_12440#1 ------------------------------------------------------------ consensus_12440#0 TCTGTGATTTAAGTTGGGAAACGAAATATCTGAACTATTAAAAAATTGAAGTCATGAACA 120 consensus_12440#1 ------------------------------------------------------------ consensus_12440#0 TTTAGGAAATTTCTTTACTTTTTCAAGACATAAATATTGAATCTCCTCAGTAACTCCTAT 180 consensus_12440#1 ------------------------------------------------------------ consensus_12440#0 ATGGGATACAGCAGCAATGCACAGTAATAAAAAAAACCAAAGCTAAAGTATTTAGAATGA 240 consensus_12440#1 ------------------------------------------------------------ consensus_12440#0 TATTGAGCATATTAACCTGTAGTAAAATTGTTTTATATATTATAGTAAGCTATTGACCCA 300 consensus_12440#1 -----------------------TCCTCCCTTTCCCATCCTGCCTCAAAG-ATAGGTTCT 36 *** ** * ** ** * * consensus_12440#0 CTAAAGGGATACAATGTTTGCTCAGTCTCTGCTGAAATGAATATTGCAGTGATTCTTGTT 360 consensus_12440#1 TGACGGGGGAAGGAAAGCTGCTC-GCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGC 95 * *** * * ***** * *** **** * * * * * consensus_12440#0 ATTGAATT---GTGTTGTTTATGCAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTG 417 consensus_12440#1 ACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCT-GTCTGGGCTCC 154 * *** * ** * ** * * * * * ****** ** *** *** consensus_12440#0 ATGTGCTCAGTCGGAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGGTACCAGAACTAA 477 consensus_12440#1 ATGT-CTAAGTGGGAACCAGTC-ACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTA 212 **** ** *** **** ** * * **** ** ** ** ** * * consensus_12440#0 AAACCCACCCTTTCTCTCATGAGAAATTTCATCATAGATCTGTAGCTTCTTAATCCATCA 537 consensus_12440#1 AGGCTCGT----------------GATTATGTGTTGTACTTGTCGCTGCTTGAT--GTGC 254 * * * *** * * * *** *** *** ** * consensus_12440#0 TAAATCACAATCACTTTGATCCGTTCTG---TTTCGAGTGCAGCTTTCACTTCTTTTCCG 594 consensus_12440#1 TCAGTCGAAATGAGCA-GATCCCTCTGGAAGCTTACAGCG-AGCTTTCACTTCTTTTCCG 312 * * ** *** * ***** * * ** ** * ******************* consensus_12440#0 GGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTCCTACCCCAAGCAC 654 consensus_12440#1 GGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTCCTACCCCAAGCAC 372 ************************************************************ consensus_12440#0 AGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAG 714 consensus_12440#1 AGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAG 432 ************************************************************ consensus_12440#0 CATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGT 774 consensus_12440#1 CATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGT 492 ************************************************************ consensus_12440#0 GCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGT 834 consensus_12440#1 GCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGT 552 ************************************************************ consensus_12440#0 TTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGC 894 consensus_12440#1 TTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGC 612 ************************************************************ consensus_12440#0 GCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTGTCCG 954 consensus_12440#1 GCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTATTCA 672 ******************************************************* * * consensus_12440#0 GGAAAAAA----- 962 consensus_12440#1 GGAAAAAAAATGA 685 ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||