These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1579 fasta sequence [GAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCAACGAAACGGCAGGACAGGAGGATGAATTCGAAAACAAGGGGATAGAATTTCCCCCGAACGCGGAAGGCGGAACACATCCAACTTTCCCATGTAAAGCCCTCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAGCACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCGGCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACCGCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGGAGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCCACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGTATAACCTTGATGGCTAGTTACTTCGCAAAACTTTGTAGACTATGGGATCTCTCTTTTTTCATCAATTGCTCTGTCGACATTCCAGGGATACAGAATTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGGCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTACTATCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTTTCATATAGCTTTGGTTAACGGCCGAGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATTTTACTGTAGTTATATGGTTGGCTGTTGGCAAGGTAAATTGTCCGCAACTGCACATTATCCAAGTTGATTAGCCCCTAGGTTTGCAAATAGCAGAAACCATTTTTAAGCCGGTGCTGACGTTTAAATTTCAATGCTTTTCAGCACACGCTTAAACCTCGTTTTCTACGTTCTAATTCCACTTGTTCTGTATAGTGCTATAAATCAGACA] [+] EMBL AK105240 [GAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCAACGAAACGGCAGGACAGGAGGATGAATTCGAAAACAAGGGGATAGAATTTCCCCCGAACGCGGAAGGCGGAACACATCCAACTTTCCCATGTAAAGCCCTCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAGCACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCGGCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACCGCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGGAGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCCACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGTATAACCTTGATGGCTAGTTACTTCGCAAAACTTTGTAGACTATGGGATCTCTCTTTTTTCATCAATTGCTCTGTCGACATTCCAGGGATACAGAATTTGGTG ] [+] EMBL AK109833 [ TCCCATGTAAAGCCCTCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAGCACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCGGCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACCGCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGGAGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCCACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGTATAACCTTGATGGCTAGTTACTTCGCAAAACTTTGTAGACTATGGGATCTCTCTTTTTTCATCAATTGCTCTGTCGACATTCCAGGGATACAGAATTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGGCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTACTATCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTTTCATATAGCTTTGGTTAACGGCCGAGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATTTTACTGTAGTTATATGGTTGGCTGTTGGCAAGGTAAATTGTCCGCAACTGCACATTATCCAAGTTGATTAGCCCCTAGGTTTGCAAATAGCAGAAACCATTTTTAAGCCGGTGCTGACGTTTAAATTTCAATGCTTTTCAGCACACGCTTAAACCTCGTTTTCTACGTTCTAATTCCACTTGTTCTGTATAGTGCTATAAATCAGACA] [+] EMBL CB667697 [ TCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAGCACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCGGCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACCGCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGGAGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCCACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCAT ] consensusID : consensus_12444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1377 fasta sequence [CATTCTAAAATTTTGGTTCTAGCTAAGATATGCTAGACTAGTGATGAATCATTCCTAGAGACTACTGGTTATCTTACTTAAGACATTCCCATGTTATGTTTGTTTTGTGATGCAGTTTATTCATGGTAACAAATTTTAGTTGTCAAATATGTTTTGCTTTCCCCATGACCATGGAAAAGCTATAGATAGCACATTCTCACCAGTCTTATTATTCAATGGCAATTGTCAAGTCATGTGATTTCTTGGTTTAGCTCTGAAATTTGTCTGTGTTTGTCTTCTGGCAACTAACATGTTAGTTTAGAATGACTGATATCGTGGCCTGTTACTTGCTTACTCATGTCTTGCTTATCTAGCAAGTACTCCATCTTTCCTAGGTTCTTATATTTTGGGACAGAGGAAGTAGCTACTACTGGTCTATTTTTTGTTAGCTAATGAAAAAACAAATATTTGTCCTGTAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAATTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTTGCAGCCAAGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTCTCCCCTGAAGAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCACCGGCAGGCATCCATCTAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTGCCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGCGGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCGAAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTGCCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATTGCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTTTCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTCATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTTAAGGGATGTTTTGTTCGCCCT-GTTTAAGGTCAAAGGATGCTAATAATCTTCTCTTCTTCTCCTTAAA] [+] EMBL AK064251 [CATTCTAAAATTTTGGTTCTAGCTAAGATATGCTAGACTAGTGATGAATCATTCCTAGAGACTACTGGTTATCTTACTTAAGACATTCCCATGTTATGTTTGTTTTGTGATGCAGTTTATTCATGGTAACAAATTTTAGTTGTCAAATATGTTTTGCTTTCCCCATGACCATGGAAAAGCTATAGATAGCACATTCTCACCAGTCTTATTATTCAATGGCAATTGTCAAGTCATGTGATTTCTTGGTTTAGCTCTGAAATTTGTCTGTGTTTGTCTTCTGGCAACTAACATGTTAGTTTAGAATGACTGATATCGTGGCCTGTTACTTGCTTACTCATGTCTTGCTTATCTAGCAAGTACTCCATCTTTCCTAGGTTCTTATATTTTGGGACAGAGGAAGTAGCTACTACTGGTCTATTTTTTGTTAGCTAATGAAAAAACAAATATTTGTCCTGTAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAATTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTTGCAGCC AGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTCTCCCCTGAAGAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCACCGGCAGGCATCCATCTAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTGCCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGCGGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCGAAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTGCCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATTGCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTTTCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTCATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTTAAGGGATGTTTTGTTCGCCCT G ] [-] EMBL CB685048 [ TTTGGTTGCAGCCAAGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTCTCCCCTGAAGAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCACCGGCAGGCATCCATCTAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTGCCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGCGGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCGAAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTGCCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATTGCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTTTCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTCATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTTAAGGGATGTTTTGTTCGCCCT GTTTAAGGTCAAAGGATGCTAATAATCTTCTCTTCTTCTCCTTAAA] [+] EMBL CB685047 [ CAGCCCTGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTCTCCCCTGAAGAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCACCGGCAGGCATCCATCTAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTGCCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGCGGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCGAAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTGCCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATTGCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTTTCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTCATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTTAAGGGATGTTTTGTTCGCCCTGGTTTGATGTCAAAGGATGCTAATAATCTTC ] consensusID : consensus_12444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 795 fasta sequence [AAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGG-CCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATNAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGAT-ATT-CTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAA-TTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTT-CCATGC-TGTTTCTGCATATAATTTGGTAA-TGGGACGACAAACTGAACCAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGCCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTATTTTCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTCTTCATATAGCTCTGGTTAACGGCCGAGGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATGGTGCGGTAGTTATATGGTTGGCTGTTGGCCAAACAAAAAAGGG] [-] EMBL AU183645 [AAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGG CCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATNAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGAT ATT CTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTA GCAATGAACTGCTACTGAGCATGGATACAGAATTTTGGTGGCTCA TTTGAACTAT GGTTTACAACTTTCCCATGCTTGTTTCTGCATATAATTTGGTAATTGGGA ] [-] EMBL CB667698 [ CCGCCACGGACCACAAGGATGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTGGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGAT ATT CTGATATTGGGTTGCATTGGACTCCTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAA TTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTT CCATGC TGTTTCTGCATATAATTTGGTAA TGGGACGACAAACTGAACCAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGCCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTATTTTCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTCTTCATATAGCTCTGGTTAACGGCCGAGGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATGGTGCGGTAGTTATATGGTTGGCTGTTGGCCAAACAAAAAAGGG] [-] EMBL C74068 [ GTTCAACCGGCCCCNTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATAATTCCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAA TTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTT CCATGC TGTTTCTGCATATAATTTGGTAA TGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGGCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTACTATCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAAT ] consensusID : consensus_12444#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CCTAACTCTCCTAGCGCCATCCTTTCAAATGAGAGTAAAGATCTTGCTAACATGGTATTCGATGGATGGGAGAAAAGTATGCTCCTTGGTGCTCATTGCTGCATAAGGTCTTACATGAATTAGGATGATATCCTAATACANATCAAACTGCAAATCATATCTGCCCCAAATTGATGAAATATAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAATTTGGTGGCTCATTTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCT] [+] EMBL OSS2925A [CCTAACTCTCCTAGCGCCATCCTTTCAAATGAGAGTAAAGATCTTGCTAACATGGTATTCGATGGATGGGAGAAAAGTATGCTCCTTGGTGCTCATTGCTGCATAAGGTCTTACATGAATTAGGATGATATCCTAATACANATCAAACTGCAAATCATATCTGCCCCAAATTGATGAAATATAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAATTTGGTGGCTCATTTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12444#1 ------------------------------------------------------------ consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 GAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGG 60 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 ------------------------------------------------------------ consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 CGGAATCAGCGGGGAAAGAAGACCCAACGAAACGGCAGGACAGGAGGATGAATTCGAAAA 120 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 ------------------------------------------------------------ consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 CAAGGGGATAGAATTTCCCCCGAACGCGGAAGGCGGAACACATCCAACTTTCCCATGTAA 180 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 ------------------------------------------------------------ consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 AGCCCTCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAG 240 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 ------------------------------------------------------------ consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 CACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCG 300 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 ------------------------------------------------------------ consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 GCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACC 360 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 ------------------------------CATTCTAAAATTTTGGTTCTAGCTAAGATA 30 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 GCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGG 420 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 TGCTAGACTAGTGATGAATCATTCCTAGAGACTACTGGTTATCTTACTTAAGACATTCCC 90 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 AGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCC 480 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 ATGTTATGTTTGTTTTGTGATGCAGTTTATTCATGGTAACAAATTTTAGTTGTCAAATAT 150 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 ACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCC 540 consensus_12444#2 -----------------------------------------------------AAGCGCC 7 consensus_12444#1 GTTTTGCTTTCCCCATGACCATGGAAAAGCTATAGATAGCACATTCTCACCAGTCTTATT 210 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 GCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGG 600 consensus_12444#2 GCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGG 67 consensus_12444#1 ATTCAATGGCAATTGTCAAGTCATGTGATTTCTTGGTTTAGCTCTGAAATTTGTCTGTGT 270 consensus_12444#3 ---------------------------------------------------------CCT 3 consensus_12444#0 CCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGG 660 consensus_12444#2 CCCC-GTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGG 126 consensus_12444#1 TTGTCTTCTGGCAACTAACATGTTAGTTTAGAATGACTGATATCGTGGCCTGTTACTTGC 330 consensus_12444#3 AACTCTCCTAGCG-CCATCCTTTCAAATGAGAGTAAAGATCTTGCTAACATGGTATTCGA 62 consensus_12444#0 ACGTGGAGGAGC--TGGAGATGATGAA-GATGATGGGGATCCCCGTCGGCTTCGACTCCA 717 consensus_12444#2 ACGTGGAGGAGC--TGGAGATGATGAA-GATGATGGGGATCCCCGTCGGCTTCGACTCCA 183 * ** * * * * * * * consensus_12444#1 TTACTCATGTCTTGCTTATCTAGCAAGTACTCCATCTTTCCTAGGTTCTTATATTTTGG- 389 consensus_12444#3 TGGATGGGAGAAAAGTATGCTCCTTGGTGCTCATTGCTGCATAAGGTCTTACAT---GA- 118 consensus_12444#0 CCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGC 777 consensus_12444#2 CCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGC 243 * * * ** * * * * consensus_12444#1 ------GACAGAG--GAAGTAGCTACTACTGGTCTATTTTTTGTTAGCTAATGAAAAAAC 441 consensus_12444#3 ------ATTAGGA--TGATATCCTAATACANATCAAACT---GCAAATCATATCTGCCCC 167 consensus_12444#0 AGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCA 837 consensus_12444#2 AGCCGCGGCAGTACATNAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCA 303 ** * * * * * * consensus_12444#1 AAATATTTGTCCTGTA-GGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTG 500 consensus_12444#3 AAATTGATGAAATATAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTG 227 consensus_12444#0 ACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTG 897 consensus_12444#2 ACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTG 363 * * * ******************************************* consensus_12444#1 GAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATG------ 554 consensus_12444#3 GAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATG------ 281 consensus_12444#0 GAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGTATAAC 957 consensus_12444#2 GAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATG------ 417 ****************************************************** consensus_12444#1 ------------------------------------------------------------ consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 CTTGATGGCTAGTTACTTCGCAAAACTTTGTAGACTATGGGATCTCTCTTTTTTCATCAA 1017 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 ---------------------GATACAGAATTTGGTGGCTCATTTT-GAACTATGGGTTT 592 consensus_12444#3 ---------------------GATACAGAATTTGGTGGCTCATTTTTGAACTATGGGTTT 320 consensus_12444#0 TTGCTCTGTCGACATTCCAGGGATACAGAATTTGGTGGCTCATTTT-GAACTATGGGTTT 1076 consensus_12444#2 ---------------------GATACAGAATTTGGTGGCTCATTTT-GAACTATGGGTTT 455 ************************* ************* consensus_12444#1 ACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCC 652 consensus_12444#3 ACAACTTTCCATGCTGTTTCT--------------------------------------- 341 consensus_12444#0 ACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCC 1136 consensus_12444#2 ACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAACCAGCC 515 ********************* consensus_12444#1 TTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATT 712 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 TTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATT 1196 consensus_12444#2 TTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATT 575 consensus_12444#1 TGGTTGCAGCCAAGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTC 772 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 TGGTGGGTGATGGTTGCAAATTTGGCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTAC 1256 consensus_12444#2 TGGTGGGTGATGGTTGCAAATTTGCCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTAT 635 consensus_12444#1 TCCCCTGAA-GAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCA 831 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 TATCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACT-TTCATATAGCT 1315 consensus_12444#2 TTTCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTCTTCATATAGCT 695 consensus_12444#1 CCGGCAGGCATCCATC-TAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTG 890 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 TTGGTTAACGGCCGAG-TTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATTTTA 1374 consensus_12444#2 CTGGTTAACGGCCGAGGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATGGTG 755 consensus_12444#1 CCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGC 950 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 CTGTAGTTATATGGTTGGCTGTTGGCAAGGTAAATTGTCCGCAACTGCACATTATCCAAG 1434 consensus_12444#2 CGGTAGTTATATGGTTGGCTGTTGGCCAAACAAAAAAGGG-------------------- 795 consensus_12444#1 GGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCG 1010 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 TTGATTAGCCCCTAGGTTTGCAAATAGCAGAAACCATTTTTAAGCCGGTGCTGACGTTTA 1494 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 AAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTG 1070 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 AATTTCAA--TGCTTTTCAGCACACGCTTAAACCTCGTTTTCTACGTTCTAATTCCACTT 1552 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 CCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATT 1130 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 GT-TCTGTATAGTGCTATAAATCAGACA-------------------------------- 1579 consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 GCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTT 1190 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 ------------------------------------------------------------ consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 TCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTC 1250 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 ------------------------------------------------------------ consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 ATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTT 1310 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 ------------------------------------------------------------ consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 AAGGGATGTTTTGTTCGCCCTGTTTAAGGTCAAAGGATGCTAATAATCTTCTCTTCTTCT 1370 consensus_12444#3 ------------------------------------------------------------ consensus_12444#0 ------------------------------------------------------------ consensus_12444#2 ------------------------------------------------------------ consensus_12444#1 CCTTAAA 1377 consensus_12444#3 ------- consensus_12444#0 ------- consensus_12444#2 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||