These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 441 fasta sequence [CTGTCAACGATACGCTACGTAACGGCATGATTGTGTTTTTTTTTTTTTTTTTTGGAATATCCTGGATT-CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA-CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG-CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTAGTAGAGTATCGTTTTTCTACTC] [+] EMBL CF331418 [CTGTCAACGATACGCTACGTAACGGCATGATTGTGTTTTTTTTTTTTTTTTTTGGAACATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATTGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTTAACTAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTAG ] [-] EMBL AU173559 [ TTTTTTTTTTTGGAATATCCTGGATTCCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGNACTTACAATNACANTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTNAGGATCATATGATCCCTTTGCTCAAAAAAAATGGCATNAGTTTCCCTCATACTTCGGGTCTGCCATNANAAAGTGGTAAGCGATGACCAAAANAAATATGAAGATGCCCAANAAATTGGCAAANAAACCCAAGTNTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGANAGTngng ] [+] EMBL CF315483 [ TTTTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGA ] [-] EMBL CF315482 [ TTTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGAT ] [+] EMBL CF327413 [ TTTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATATATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAGAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGT ] [-] EMBL CF327412 [ TTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATATATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAGAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTA ] [-] EMBL CF331417 [ TTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTAGT ] [-] EMBL CF302519 [ ATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACGAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTAGTAGAGTATCGTTTTTCTACTC] [-] EMBL CF318779 [ atacatgtg CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCACCTATTTTGATCTGAGGATCATATGATCCCTTTGTTCAACAAAAATGGCATCAGTTTCCATCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCTCAAGATATTGGCAAAGAAACCCAAGTGTTGATCGTCAAACATGTTGGCCGCCGTCCTGGGAGGAGAGTCGCGC ] consensusID : consensus_12485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [TTTTTTTTAGATAAGTATAATCAATTTTTTTGGAATATCCTGGATTCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCACTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCGCCTGGGGAGGAGAGTCGCGCTCGCGTCTCT] [-] EMBL AU071002 [TTTTTTTTAGATAAGTATAATCAATTTTTTTGGAATATCCTGGATTCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCACTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCGCCTGGGGAGGAGAGTCGCGCTCGCGTCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12485#0 CTGTCAACGATACGCTACGTAACGGCATGATTGTGTTTTTTTTTTTTTTTTTTGGAATAT 60 consensus_12485#1 ----------------------TTTTTTTTAGATAAGTATAATCAATTTTTTTGGAATAT 38 * * * * * ************** consensus_12485#0 CCTGGATTCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAG 120 consensus_12485#1 CCTGGATTCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAG 98 ************************************************************ consensus_12485#0 GTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGG 180 consensus_12485#1 GTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGG 158 ************************************************************ consensus_12485#0 CATACATCGCACTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCA 240 consensus_12485#1 CATACATCGCACTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCA 218 ************************************************************ consensus_12485#0 TCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAA 300 consensus_12485#1 TCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAA 278 ************************************************************ consensus_12485#0 TATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGC 360 consensus_12485#1 TATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGC 338 ************************************************************ consensus_12485#0 CGCCGCCTGGG-AGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTA 419 consensus_12485#1 CGCCGCCTGGGGAGGAGAGTCGCGCTCGCGTCTCT------------------------- 373 *********** *********************** consensus_12485#0 GTAGAGTATCGTTTTTCTACTC 441 consensus_12485#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||