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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1861 fasta sequence
[CCGAGAGAGGGTGGGCCCCGCGTCTCCACCTCCCGGAGCCAATGGCAACCCAAGCCGCCGGCTCGGTCGGTCGCCCCGCCGGCGTTCCTCCTCCCCACCAGCTCAGCCCTCAGCCACCAACCACGCGCGCGCGCCGCCGTCTCGTCTCCGGTCCCCTCGGCGCGCGACCACCCAACCACCTCGACCCTCGGCGGCGCGCAAGGGCGGCGGCGGCGGCGGCAGGCGGCTGACCGCGAATGGAGCTCCTCCCGCGTGTGGGTGTGGCCGCCCCCGGTCCCGGACGCNGCGGCGCGTCGCCGTCCCCGACGCGCCGTCATCGCGCGCCCTCTCACCCCATTCTGAAGCGATCGGCGGCGGTTTGCGGCGCAGTCGCCGTCTGCAGAGGAGGGGCTGTCGCCAGGAGGAGCCGGTGGTCAACTCTGGTGACCGCAGCATATTACACAGGAACTGCTGAACTGGTCGACTTTAACTGGGAAACTCTTGGGTTTCAACCCGTGCCGACTGACTTTATGTATGTGATGAGATGTTCCGAGGAAGGGGTGTTCACCAAGGGTGAATTGGTGCCATATGGGCCAATAGAACTGAACCCAGCAGCTGGAGTGTTGAATTATGGTCAGGGTTTACTTGAAGGTCTGCGAGCACATAGAAAAGAGGATGGATCAGTCCTTCTATTTCGTCCTGATGAAAATGCTTTACGGATGAGAGTAGGCGCAGACCGGTTATGTATGCCTGCACCAAGTGTAGAGCAGTTCCTAGAAGCTATAAAGCTAACAATTTTAGCAAACAAGCGCTGGGTACCCCCTACTGGCAAAGGTTCTTTATATATCAGACCGCTGCTGATTGGAAGTGGGGCTATCCTCGGTGTTGCACCAGCCCCAGAGTACACATTTGTTGTCTTTGCTTGCCCAGTTGGGCACTATTTTAAGGATGGCTTATCTCCAATCAGCTTGTTAACCGAGGAAGAATATCAGTGTGCGGCACCAGGTGGAACTGGTGATATAAAGACTATCGGAAATTATGCTTCAGCCGTTTATGCTAAAGAAAGAGCTAAGGAGAGAGGTCATTCTGATGTTCTTTACTTGGATCCAGTGCATAAAAAGTTTGTTGAGGAACTTTCGTCCTGTAATATATTCATGGTGAAGGACAACATTATTTCTACTCCACTATTAACGGGAACAGTTCTTCCTGGCATCACAAGAAGAAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAATAGATGAGTTGCTTGACGCTGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCTCTGTTGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAG-CCTGGTCGTTATGGACGGTCTTAAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTATTTATTGGACAATTAGGTGTGTGCGTATTGAACATTGCTTGGATATATTTTGTCAGGGGCATCACGGGAGGCATAAAACCTGCTAGCCAAGTTGGCCGTAATGAATTTAATGACTACCGCTTACTTGCACATTNTGCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB639932 [CCGAGAGAGGGTGGGCCCCGCGTCTCCACCTCCCGGAGCCAATGGCAACCCAAGCCGCCGGCTCGGTCGGTCGCCCCGCCGGCGTTCCTCCTCCCCACCAGCTCAGCCCTCAGCCACCAACCACGCGCGCGCGCCGCCGTCTCGTCTCCGGTCCCCTCGGCGCGCGACCACCCAACCACCTCGACCCTCGGCGGCGCGCAAGGGCGGCGGCGGCGGCGGCAGGCGGCTGACCGCGAATGGAGCTCCTCCCGCGTGTGGGTGTGGCCGCCCCCGGTCCCGGACGCNGCGGCGCGTCGCCGTCCCCGACGCGCCGTCATCGCGCGCCCTCTCA ]
[+] EMBL AK106376 [ CCAAGCCGCCGGCTCGGTCGGTCGCCCCGCCGGCGTTCCTCCTCCCCACCAGCTCAGCCCTCAGCCACCAACCACGCGCGCGCGCCGCCGTCTCGTCTCCGGTCCCCTCGGCGCGCGACCACCCAACCACCTCGACCCTCGGCGGCGCGCAAGGGCGGCGGCGGCGGCGGCAGGCGGCTGACCGCGAATGGAGCTCCTCCCGCGTGTGGGTGTGGCCGCCCCCGGTCCCGGACGCGGCGGCGCGTCGCCGTCCCCGACGCGCCGTCATCGCGCGCCCTCTCACCCCATTCTGAAGCGATCGGCGGCGGTTTGCGGCGCAGTCGCCGTCTGCAGAGGAGGGGCTGTCGCCAGGAGGAGCCGGTGGTCAACTCTGGTGACCGCAGCATATTACACAGGAACTGCTGAACTGGTCGACTTTAACTGGGAAACTCTTGGGTTTCAACCCGTGCCGACTGACTTTATGTATGTGATGAGATGTTCCGAGGAAGGGGTGTTCACCAAGGGTGAATTGGTGCCATATGGGCCAATAGAACTGAACCCAGCAGCTGGAGTGTTGAATTATGGTCAGGGTTTACTTGAAGGTCTGCGAGCACATAGAAAAGAGGATGGATCAGTCCTTCTATTTCGTCCTGATGAAAATGCTTTACGGATGAGAGTAGGCGCAGACCGGTTATGTATGCCTGCACCAAGTGTAGAGCAGTTCCTAGAAGCTATAAAGCTAACAATTTTAGCAAACAAGCGCTGGGTACCCCCTACTGGCAAAGGTTCTTTATATATCAGACCGCTGCTGATTGGAAGTGGGGCTATCCTCGGTGTTGCACCAGCCCCAGAGTACACATTTGTTGTCTTTGCTTGCCCAGTTGGGCACTATTTTAAGGATGGCTTATCTCCAATCAGCTTGTTAACCGAGGAAGAATATCAGTGTGCGGCACCAGGTGGAACTGGTGATATAAAGACTATCGGAAATTATGCTTCAGCCGTTTATGCTAAAGAAAGAGCTAAGGAGAGAGGTCATTCTGATGTTCTTTACTTGGATCCAGTGCATAAAAAGTTTGTTGAGGAACTTTCGTCCTGTAATATATTCATGGTGAAGGACAACATTATTTCTACTCCACTATTAACGGGAACAGTTCTTCCTGGCATCACAAGAAGAAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAATAGATGAGTTGCTTGACGCTGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCTCTGTTGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAG CCTGGTCGTTATGGACGGTCTTAAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTA ]
[+] EMBL CB658624 [ GCCCTCTCACCCCATTCTGAAGCGATCGGCGGCGGTTTGCGGCGCAGTCGCCGTCTGCAGAGGAGGGGCTGTCGCCAGGAGGAGCCGGTGGTCAACTCTGGTGACCGCAGCATATTACACAGGAACTGCTGAACTGGTCGACTTTAACTGGGAAACTCTTGGGTTTCAACCCGTGCCGACTGACTTTATGTATGTGATGAGATGTTCCGAGGAAGGGGTGTTCACCAAGGGTGAATTGGTGCCATATGGGCCAATAGAACTGAACCCAGCAGCTGGAGTGTTGAATTATGGTCAGGGTTTACTTGAAGGTCTGCGAGCACATAGAAAAGAGGATGGATCAGTCCTTCTATTTCGTCCTGATGAAAATGCTTTACGGATGAGAGTAGGCGCAGACCGGTTATGTATGCCTGCACCAAGTGTAGAGCAGTTCCTAGAAGCTATAAAGCTAACAATTTTAGCAAACAAGCGCTGGGTACCCCCTACTGGCAAAGGTTCTTTATATATCAGACCGCTGCTGATTGGAAGTGGGGCTATCCTCGGTGTTGCACCAGCCCCAGAGTACACATTTGTTGTCTTTGCTTGCCCAGTTGGGCACTATTTTAAGGATGGCTTATCTCCAATCAGCTTGTTAACCGAGGAAGAATATCAGTGTGCGGCACCAGGTGGAACTGGTGATATAAAGACTATCGGAAATTATGCTTCAGCCGTTTATGCTAAAGAAAGAGCTAAGGAGAGAGGTCATTCTGATGTTCTTTACTTGGATCCAGTGCATAAA ]
[+] EMBL BE040349 [ AGAGGTGGGTCTGATGTTCTTTACTTGGATCCAGTGCATAAAAAGTTTGTTGAGGAACTTTCGTCCTGTAATATATTCATGGTGAAGGACAACATTATTTCTACTCCACTATTAACGGGAACAGTTCTTCCTGGCATCACAAGAAGAAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAATAGATGAGTTGCTTGACGCTGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCTCTGTTGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCCTGGTCATTATGGACGGTCTTAAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCAGGCCATAACTTTTGCGGCAGCTTGTCTCATGTGTATTCAAGACANAATTATTTGCACTATTTATTGGACAATTAGGTGTGTGCGTATTGAACATTGCTTGGATATATTTTGTCAGGGGCATCACGGGAGGCATAAAACCTGCTAGCCAAGTTGGCCGTAATGAATTTAATGACTACCGCTTACTTGCACATTNTGCAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 789 fasta sequence
[TCTGATGTTCTTTAC-TTGGATCCAGTGCATAAAAAGTTTGTTGAGGAACTTTCGTCCTGTAATATATTCATGGTGAAGGACAACATTATTTCTACTCCACTATTAACGG-GAACAGTTCTTCCTGGCATCACAAGAAGAAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAATAGATGAGTTGCTTGACGCTGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCTCTGTTGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCTGGTCGTTATGGACGGTCTTAAGGTTCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTATTTATTGG-ACAATTAGGTGTGTGCGTAAAAAAAAAAGG]
[-] EMBL CB658625 [TCTGATGTTCTTTAC TTGGATCCAGTGCATAAAAAGTTTGTTGAGGAACTTTCGTCCTGTAATATATTCATGGTGAAGGACAACATTATTTCTACTCCACTATTAACGG GAACAGTTCTTCCTGGCATCGCAAGAAGAAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAATAGATGAGTTGCTTGACGCTGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCTCTGTCGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCTGGTCGTTATGGACGGTCTTAAGGTTCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCGCCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTATGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTATTTATTGG ACAATTAGGTGTGTGCGTAAAAAAAAAAGG]
[+] EMBL CB674772 [ GTTCTTCCCTTTGGATCCAGTGCATAAAAAGTTTGTTGAGGAACTTTCGTCCTGTAATATATTCATGGTGAAGGACAACATTATTTCTACTCCACTATTAACGGTGAACAGTTCTTCCTGGCATCACAAGAAGAAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAATAGATGAGTTGCTTGACGATGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCTCTGTTGGTTGCATAGTGTACCACGGGAGAAGAGTGGAGTATGGGAACCACAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCTGGTCGTTATGGACGGTCTTAAGGATCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGTATACAAATAATCTGGGGCCCATAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTATTTATTGGAACAATTAc ]
[-] EMBL CB674773 [ GTTGAGGAACTTTCGTCCTGTAATATATTCATGGTGAAGGACAACATTATTTCTACTCCACTATTAACGG GAACAGTTCTTCCTGGCATCACAAGAAGAAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAATAGATGAGTTGCTTGACGATGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCTCTGTTGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCTGGTCGTTATGGACGGTCTTAAGGTTCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAAATAGTGGCACTATTTATTGG ACAATTAGGTGTGTGCG ]
[+] EMBL AK062472 [ AAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAATAGATGAGTTGCTTGACGCTGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCTCTGTTGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCTGGTCGTTATGGACGGTCTTAAGGTTCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTATTTATTGG ACAATTAGGTGTGTG ]
consensusID : consensus_12519#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence
[AAATCTCTCCCCGATAATATTCTGGGAAGACAAATTTTTCTCCCCATATAGGGGAACGTTCTTCGGGCTCAAAAAAAAGAATATTGAACCGCCGTAGCTTGATTTCAGGTAAAAAGGTCTTATACAATAATGAGTGTTACGCTTAAGAGTTTTTGNACTGGAATTCTGTGGACTATCCTCTGTGGTTGCATAGTGTACAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCTGGTCGTTATGGACGGTCTTAAGGTTCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTATTTATTGGACAATTAGGTGTGTGCGTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT]
[-] EMBL AW155437 [AAATCTCTCCCCGATAATATTCTGGGAAGACAAATTTTTCTCCCCATATAGGGGAACGTTCTTCGGGCTCAAAAAAAAGAATATTGAACCGCCGTAGCTTGATTTCAGGTAAAAAGGTCTTATACAATAATGAGTGTTACGCTTAAGAGTTTTTGNACTGGAATTCTGTGGACTATCCTCTGTGGTTGCATAGTGTACAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCTGGTCGTTATGGACGGTCTTAAGGTTCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTATTTATTGGACAATTAGGTGTGTGCGTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT]
consensusID : consensus_12519#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[NGGGAGAATGAAANCNTCCTGATTCAGTGAGNTTTTATACANAGGGGTGTGACGNGGGAGTTTNGNANGGAATTNNGGTATATCTTNGTGGTGCATAGGTACCAGGGNGAGAGGGNGTATGGGACCAGANTTCAGACTGNTTTCAGCAATTTATTCAGCANTTACGGTATCCAGAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCCTGGTCATTATGGACGGTCTTAAGGTTCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTATTTATTGGACAAAAAAAAAA]
[-] EMBL AA753307 [NGGGAGAATGAAANCNTCCTGATTCAGTGAGNTTTTATACANAGGGGTGTGACGNGGGAGTTTNGNANGGAATTNNGGTATATCTTNGTGGTGCATAGGTACCAGGGNGAGAGGGNGTATGGGACCAGANTTCAGACTGNTTTCAGCAATTTATTCAGCANTTACGGTATCCAGAAGGCCTCGTGGAGGACAGTATGGGATGGACTGTGCAACTGAATTAGTAGCCCTGGTCATTATGGACGGTCTTAAGGTTCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGACAAAATTATTGGCACTATTTATTGGACAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 CCGAGAGAGGGTGGGCCCCGCGTCTCCACCTCCCGGAGCCAATGGCAACCCAAGCCGCCG 60
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 GCTCGGTCGGTCGCCCCGCCGGCGTTCCTCCTCCCCACCAGCTCAGCCCTCAGCCACCAA 120
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 CCACGCGCGCGCGCCGCCGTCTCGTCTCCGGTCCCCTCGGCGCGCGACCACCCAACCACC 180
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 TCGACCCTCGGCGGCGCGCAAGGGCGGCGGCGGCGGCGGCAGGCGGCTGACCGCGAATGG 240
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 AGCTCCTCCCGCGTGTGGGTGTGGCCGCCCCCGGTCCCGGACGCNGCGGCGCGTCGCCGT 300
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 CCCCGACGCGCCGTCATCGCGCGCCCTCTCACCCCATTCTGAAGCGATCGGCGGCGGTTT 360
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 GCGGCGCAGTCGCCGTCTGCAGAGGAGGGGCTGTCGCCAGGAGGAGCCGGTGGTCAACTC 420
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 TGGTGACCGCAGCATATTACACAGGAACTGCTGAACTGGTCGACTTTAACTGGGAAACTC 480
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 TTGGGTTTCAACCCGTGCCGACTGACTTTATGTATGTGATGAGATGTTCCGAGGAAGGGG 540
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 TGTTCACCAAGGGTGAATTGGTGCCATATGGGCCAATAGAACTGAACCCAGCAGCTGGAG 600
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 TGTTGAATTATGGTCAGGGTTTACTTGAAGGTCTGCGAGCACATAGAAAAGAGGATGGAT 660
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 CAGTCCTTCTATTTCGTCCTGATGAAAATGCTTTACGGATGAGAGTAGGCGCAGACCGGT 720
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 TATGTATGCCTGCACCAAGTGTAGAGCAGTTCCTAGAAGCTATAAAGCTAACAATTTTAG 780
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 CAAACAAGCGCTGGGTACCCCCTACTGGCAAAGGTTCTTTATATATCAGACCGCTGCTGA 840
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 TTGGAAGTGGGGCTATCCTCGGTGTTGCACCAGCCCCAGAGTACACATTTGTTGTCTTTG 900
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 CTTGCCCAGTTGGGCACTATTTTAAGGATGGCTTATCTCCAATCAGCTTGTTAACCGAGG 960
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 AAGAATATCAGTGTGCGGCACCAGGTGGAACTGGTGATATAAAGACTATCGGAAATTATG 1020
consensus_12519#2 ------------------------------------------------------------
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 --------------------------------------------TCTGATGTTCTTTACT 16
consensus_12519#0 CTTCAGCCGTTTATGCTAAAGAAAGAGCTAAGGAGAGAGGTCATTCTGATGTTCTTTACT 1080
consensus_12519#2 -------------------------------------------AAATCTCTCCCCGATAA 17
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 TGGATCCAGTGCATAAAAAGTTTGTTGAGGAACTTTCGTCCTGTAATATATTCATGGTGA 76
consensus_12519#0 TGGATCCAGTGCATAAAAAGTTTGTTGAGGAACTTTCGTCCTGTAATATATTCATGGTGA 1140
consensus_12519#2 TATTCTGGGAAGACAAATTTTTCTCCCCATATAGGGGAACGTTCTTCGGGCTCAAAAAAA 77
consensus_12519#3 ----------------------------------------------------------NG 2
consensus_12519#1 AGGACAACATTATTTCTACTCCACTATTAACGGGAACAGTTCTTCCTGGCATCACAAGAA 136
consensus_12519#0 AGGACAACATTATTTCTACTCCACTATTAACGGGAACAGTTCTTCCTGGCATCACAAGAA 1200
consensus_12519#2 AGAATATTGA-----ACCGCCGTAGCTT--GATTTCAGGTAAAAAGGTCTTATACAATAA 130
consensus_12519#3 GGAGAATGAA-----ANCNTCCTGATTC--AGT----------GAGNTTTTATACAN--A 43
consensus_12519#1 GAAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAA 196
consensus_12519#0 GAAGTATAATTGAATACGCCCGTAGCCTTGGATTTCAGGTTGAAGAGTGTCTTATTACAA 1260
* ** * * * * * * ** *
consensus_12519#2 TGAGTG-------TTACGCTT--AAGAGTTTTTGNACTGGAA-TTCTGTGGAC-TATCCT 179
consensus_12519#3 GGGGTG-------TGACGNGG--GAG----TTTNGNANGGAA-TTNNG--GTA-TATCTT 86
consensus_12519#1 TAGATGAGTTGCTTGACGCTGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCT 256
consensus_12519#0 TAGATGAGTTGCTTGACGCTGATGAAGTTTTCTGTACTGGAACTTCTGTGGTACTATCCT 1320
** * *** * * * **** ** * * **** *
consensus_12519#2 CTGT-GGTTGCATAGTGTACAGGGG-AGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAA 237
consensus_12519#3 N-GT-GGT-GCATAG-GTACCAGGG-NGAGAGG--GNGTATGGGA-CCAGAN-TTCAGA- 136
consensus_12519#1 CTGTTGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAA 316
consensus_12519#0 CTGTTGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAACCAGAAGTTCAGAA 1380
** *** ****** **** *** ** * * ******** ***** ******
consensus_12519#2 CTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACA 297
consensus_12519#3 CTGN-TTTCAGCAATT-TATTCAGCANTTACGG-TATCCAGAA-GGCCTCGTGGAGGACA 192
consensus_12519#1 CTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACA 376
consensus_12519#0 CTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACA 1440
*** * ******* * ********* ****** ********* ****************
consensus_12519#2 GTATGGGATGGACTGTGCAACTGAATTAGTAGCC-TGGTCGTTATGGACGGTCTTAAGGT 356
consensus_12519#3 GTATGGGATGGACTGTGCAACTGAATTAGTAGCCCTGGTCATTATGGACGGTCTTAAGGT 252
consensus_12519#1 GTATGGGATGGACTGTGCAACTGAATTAGTAGCC-TGGTCGTTATGGACGGTCTTAAGGT 435
consensus_12519#0 GTATGGGATGGACTGTGCAACTGAATTAGTAGCC-TGGTCGTTATGGACGGTCTTAAGGT 1499
********************************** ***** *******************
consensus_12519#2 TCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTT 416
consensus_12519#3 TCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTT 312
consensus_12519#1 TCTTCCTGTCAAATAGTGCTTTCTTGTTTGAAGCAGCAATAAAGAAATTCACCGAATTTT 495
consensus_12519#0 ------------------------------------------------------------
consensus_12519#2 CTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGT 476
consensus_12519#3 CTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGT 372
consensus_12519#1 CTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGCAGGTACACACAGT 555
consensus_12519#0 ---------------------------------------------------ACACACAGT 1508
*********
consensus_12519#2 ATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTA 536
consensus_12519#3 ATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTA 432
consensus_12519#1 ATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTA 615
consensus_12519#0 ATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTA 1568
************************************************************
consensus_12519#2 CCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATA 596
consensus_12519#3 CCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATA 492
consensus_12519#1 CCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATA 675
consensus_12519#0 CCTTTCTTACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATA 1628
************************************************************
consensus_12519#2 TTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGAC 656
consensus_12519#3 TTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGAC 552
consensus_12519#1 TTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGAC 735
consensus_12519#0 TTCCGTGCATCAATTCGGCCCATAACTTTGTCGTCAGCTTGTCTCATGTGTATTCAGGAC 1688
************************************************************
consensus_12519#2 AAAATTATTGGCACTATTTATTGGACAATTAGGTGTGTGCGTAAAAAAAAAAAAAAAAAA 716
consensus_12519#3 AAAATTATTGGCACTATTTATTGGACAAAAAAAAAA------------------------ 588
consensus_12519#1 AAAATTATTGGCACTATTTATTGGACAATTAGGTGTGTGCGTAAAAAAAAAAGG------ 789
consensus_12519#0 AAAATTATTGGCACTATTTATTGGACAATTAGGTGTGTGCGTATTGAACATTGCTTGGAT 1748
**************************** *
consensus_12519#2 ACTCGAGACTAGTTCT-------------------------------------------- 732
consensus_12519#3 ------------------------------------------------------------
consensus_12519#1 ------------------------------------------------------------
consensus_12519#0 ATATTTTGTCAGGGGCATCACGGGAGGCATAAAACCTGCTAGCCAAGTTGGCCGTAATGA 1808
consensus_12519#2 -----------------------------------------------------
consensus_12519#3 -----------------------------------------------------
consensus_12519#1 -----------------------------------------------------
consensus_12519#0 ATTTAATGACTACCGCTTACTTGCACATTNTGCAAAAAAAAAAAAAAAAAAAA 1861
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||