These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 886 fasta sequence [TTCTTGAGAAAAGCTCCAACCTTTCCTCTTCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCTCTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGAACTGCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU183335 [TTCTTGAGAAAAGCTCCAACCTTTCCTCTTCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAAC ] [+] EMBL AK073787 [ CTCTTCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCTCTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGAACTGCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGT ] [+] EMBL AU082394 [ AGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCC ] [+] EMBL C73276 [ AGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGG GGCGGCGGCGGAGGCCGGAAGAGCTCGTNGCCGGCCGGGAAGCCGNGGTAGGCGGCACGGGCGGGGAGCCTGCTCGCNGGACTCCCCTCGCGGGGCAACTTCNTCGCCGACAGCATCGCGTCCAGCATGGNAGGCCTCCCGGTTTATGTNTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTTTCCAGTTTAGCAAACAGAAAAATGAGGCAAAAGATTTAGGNTCAAGGACTCCAGGGGAAAGCAGNAAGGGGAAAAGG NTTTTTCCAa ] [+] EMBL AU082450 [ ACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCNCCGACAGCATCGCGTCCAGCATNGGAGGCCTCCCGGTTTATGTCTGCCTNCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTNAGCAAACAG AAAATNAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAGCAGCAA ] [+] EMBL AU082396 [ GCGGGGCAATTTGGTCGCCGACAGCATCGCGTCCAGCATGGAAGGCCTCCCGGTTTATGTCTGCCTGCANGACACCGNTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATNTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTNTGAAAGAGAGAGGGCTNTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATNTGAACTGCGATCGGANCCTCATTTTGTTGGATGTTGTNCCGTAGTGACGATCATACNCCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU082451 [ CAGACGNTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGNGAGGGCTCTCNCCNAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGAACTNCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCAAAAAA ] [+] EMBL AU082395 [ tnTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATNTGAACTGCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACNCCATGCAAGTGAACTTCTATCGCAGNCCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [AACCCTCTTCTAAATCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCCGATAACACCCTCAGTTGTTGTCTCACAATCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGTGCGTTCGTTCCCCCCCACCCCTAAAATGGACCAGCCTTTTTCTTGGCATGTTAGAAGGGTTCTTGTGAAAAGCCCTCTGATTTTTATGATTTTTTATTATTATTTTTTGCGCAGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGGTTTGTTTGTGATTTTCTAGGATAATCAAGCTTTACTTTTATTATTGTGATGATGCTAATTTGTTGTTTTACGAATGAGGGCTGATTGTAGTGCTAGTGGTGTGTACTGTGGAGAGACAGATTTGAAGTAGAAGGATGATCCTTTCTACTAGGGTTTTATGTAGAATTTTCCTTGTAAGAACGCAGTCATCTTGCCTAGGTTTTGTTCTTTCGATTGGCAATGCTGTTGGCATCATGCTTAATTTGCGGTTACTGAATTTGTTTTGCTGATGTTAAGAGTTGGAATTTCTATGGGTTTACTCAG] [+] EMBL CB650237 [AACCCTCTTCTAAATCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCCGATAACACCCTCAGTTGTTGTCTCACAATCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGTGCGTTCGTTCCCCCCCACCCCTAAAATGGACCAGCCTTTTTCTTGGCATGTTAGAAGGGTTCTTGTGAAAAGCCCTCTGATTTTTATGATTTTTTATTATTATTTTTTGCGCAGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGGTTTGTTTGTGATTTTCTAGGATAATCAAGCTTTACTTTTATTATTGTGATGATGCTAATTTGTTGTTTTACGAATGAGGGCTGATTGTAGTGCTAGTGGTGTGTACTGTGGAGAGACAGATTTGAAGTAGAAGGATGATCCTTTCTACTAGGGTTTTATGTAGAATTTTCCTTGTAAGAACGCAGTCATCTTGCCTAGGTTTTGTTCTTTCGATTGGCAATGCTGTTGGCATCATGCTTAATTTGCGGTTACTGAATTTGTTTTGCTGATGTTAAGAGTTGGAATTTCTATGGGTTTACTCAG] consensusID : consensus_12541#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [TGTCTCTTGGGAGTCTTATCTCTTGAATATCATTTTTGGACGTATATGATTTACATTTTATAGTGGCAGTTGTTAGTATATGATCTATTGTCAGACCATGATCTTTTACATATTTTCATTACTTATGTTCTTATGATAAAGCTGATTATTGATGACACAAACAGATCATTTTAAGGCTGTTTTGTTCTGTTCATTGACTGATCACCGTTTTTGTCATTTTAGAGGGACAAGTTATAGACACAGACCCCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAATCAGAAAAATGAGGCAAAAGATGTAGGATCAAGGCCTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCTCTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGATCTGCGATCGGAACCTCATTTTGTTGGATGTTGTCCCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCA] [-] EMBL CB650238 [TGTCTCTTGGGAGTCTTATCTCTTGAATATCATTTTTGGACGTATATGATTTACATTTTATAGTGGCAGTTGTTAGTATATGATCTATTGTCAGACCATGATCTTTTACATATTTTCATTACTTATGTTCTTATGATAAAGCTGATTATTGATGACACAAACAGATCATTTTAAGGCTGTTTTGTTCTGTTCATTGACTGATCACCGTTTTTGTCATTTTAGAGGGACAAGTTATAGACACAGACCCCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAATCAGAAAAATGAGGCAAAAGATGTAGGATCAAGGCCTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCTCTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGATCTGCGATCGGAACCTCATTTTGTTGGATGTTGTCCCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12541#0 TTCTTGAGAAAAGCTCCAACCTTTCCTCTTCTTCCTCTTCCCCTCCCTCTCGCTGCCTGC 60 consensus_12541#2 ------------------------------------------------------------ consensus_12541#1 ---------------AACCCTCTTCTAAATCTTCCTCTTCCCCTCCCTCTCGCTGCCTGC 45 consensus_12541#0 CGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCT 120 consensus_12541#2 ------------------------------------------------------------ consensus_12541#1 CGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCCGATAACACCCTCAGTTGTTGTCT 105 consensus_12541#0 CACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGAT 180 consensus_12541#2 ---------TGTCTC-TTGGGAGTCTTATCTCTTGAATATCATTTTTGGACGTATATGAT 50 consensus_12541#1 CACAATCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGAT 165 * ** **** * * * *** *** ** * *** consensus_12541#0 GGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGC 240 consensus_12541#2 TTACATT--TTATAGTGGCAGTTGTTAGTATATGATCT-ATTGTCAGACCATGATCTTTT 107 consensus_12541#1 GGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGC 225 * * * *** * * * ** ** * * * * * * * consensus_12541#0 GGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGC 300 consensus_12541#2 ACA-----TATTTTCATTACTTATGTTCTTATGATAAA----GCTGATTATTGATGACAC 158 consensus_12541#1 GGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGC 285 * * * ** ** ** ** * * * * * consensus_12541#0 CGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGC 360 consensus_12541#2 AAACAG-ATCATTTTAAGGCTGTTTTG--TTCTGTTCATTGACTGATCAC-CGTTTTTGT 214 consensus_12541#1 CGACAGCATCGCGTCCAGCATGGTGCGT-TCGTTCCCCCCCACCCCTAAAATGGACCAGC 344 **** *** * ** ** * * * * * consensus_12541#0 TCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATC---AGATCTCT 417 consensus_12541#2 CATTTTAGAGGGACAAGTTATAGACACAGACCCCACAAACATTTTAATC---AGATCTCT 271 consensus_12541#1 CTTTTTCTTGG--CATGTTAGAAGGGTTCTTGTGAAAAGCCCTCTGATTTTTATGATTTT 402 * ** ** **** * * ** * * * ** * * * consensus_12541#0 CCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAG 477 consensus_12541#2 CCAGTTGAGCAATCAGAAAAATGAGGCAAAAGATGTAGGATCAAGGCCTCCAGGAGAAAG 331 consensus_12541#1 TTATTATTATTTTTTGCGCAGGGAGGC-----CTCCCGGTTTATGTCTGCCTGCACGACA 457 * * * * ***** * ** * * * ** * * * consensus_12541#0 CAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGC 537 consensus_12541#2 CAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGC 391 consensus_12541#1 CCGCTCCTCCA---GGTTTGTTTGTGATTTTCTAGG-----ATAATCAAGCTTTA----C 505 * ** * *** ** ** ** *** * **** * ** * * consensus_12541#0 TAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGA 597 consensus_12541#2 TAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGA 451 consensus_12541#1 TTTTATTATTGTGATGAT--GCTAATTTGTTGTTTTACGAATGAGGGCTGATTGT----- 558 * * * * * * * ** ** * * ** * *** ** * consensus_12541#0 GCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCT 657 consensus_12541#2 GCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCT 511 consensus_12541#1 ---AGTGCTAGTGGTGTGTACTGTGGAGAGACAGA-----TTTGAAGTAGAAGGATGATC 610 *** * *** ******* * ** *** ** * consensus_12541#0 CTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATC 717 consensus_12541#2 CTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATC 571 consensus_12541#1 CTTTCTACTAGGGTTTTATGTAGAATT----------TTCCTTGTAAGAACGCAGTCATC 660 ** * * *** * * *** * ** *** ** *** *** consensus_12541#0 TGAACTGCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACACCA 777 consensus_12541#2 TGATCTGCGATCGGAACCTCATTTTGTTGGATGTTGTCCCGTAGTGACGATCATACACCA 631 consensus_12541#1 TTGCCTAGGTTTTG---TTCTTTCGATTGGCAATGCTGTTGGCATCATGCTTA-ATTTGC 716 * ** * * * ** ** **** * * * * * * * * * consensus_12541#0 TGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAG-TGCCGAAAT 836 consensus_12541#2 TGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGGTGCCGAAAT 691 consensus_12541#1 GGTTACTGAATTTGTTTTGCTGATGTTAAG-AGTTGGAATTTCTATGGGTTTACTCAG-- 773 * * **** ** * * ** ** * * * * * ** ** * * * consensus_12541#0 GAAAGATCTGGCTGATAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA 886 consensus_12541#2 GAAAGATCTGGCTGATAGTTTCCA-------------------------- 715 consensus_12541#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||