These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2403 fasta sequence [ACTGCTACCTCTCACGTCTCACCCACACCTACCCAATCTCCCGGTGCGCAGCGGCGAGCGACATGGAGCTCCGCGAGCTCGGCGCCACGGGCCTCCGCGTCAGCCCCGTCGGCTTCGGCGCCTCCCCTCTCGGCCATGTCTTCGGCGACGTCCCCCGCGACGTCGCCCGCGCCGCCGTCCGCCGCGCCCTCGACCTCGGCATCAACTTCTTCGACACCTCCCCGTACTACGGCGGCACGGTGTCGGAGTCGGTGCTCGGGGACTGCCTCCGCGCCGCGGGCGTGCCGCGGGACCGGTTCGTGGTCGCCACCAAGTGCGGGCGCTACAGGGAAGGGTTCGACTTCAGCGCCGCCCGCGTCACCCGCAGCGTCGACGAGAGCCTCGCACGCCTCGGCCTCGACTACGTCGACATCCTCCACTGCCACGACATCGAGTTCACCGACCTCGACCAGATTGTGAATGAGACGATTCCGGTGCTCCAGAAGATCAAGGAGAGCGGGAAGGCGCGGTTCATCGGGATAACCGGGCTGCCATTGAGCATCTACACTTATGTGCTCGACCAGGTGCCGCCAGGTTCTGTGGATGTGATTCTGTCTTACTGCCACTATGGGATCAATGATACCGCGCTTGTGGATTTGCTTCCCTACCTGAAGAGCAAAGGTGTTGGCGTGATCAGTGCTTCACCTCTTGCAATGGGGCTTCTTACAGATAACGGGCCACCCGAATGGCACCCTGCACCGAAAGAACTAAAGTTGGCATGCAGGGCAGCAGCAGATCACTGTAAGAAGAAGGGGAAAAACATTACAAAGCTAGCTATGCAGTACAGCTTGATGAACAATGAGATTTCCACGGTTCTTGTTGGAATGAACTCTCCAGAACAGGTAGAGGAGAATGTGGCTGCTGCAATTGAATTGTCTACTTCCGGTATTGATAAAGAACTTCTGCACGAAGTTGAAGCAATTCTTGAG-CCTGTCAAGAACATGACCTGGT-CCAGTGGCATTGAG-CAAGCCTGAT-ATCTGGCAG-CAGCCTGGCTCATTATAATTCATTC-ATGTATTCATTGAGTCAATTGTTTGCATTGCAATATTTCAATGGTGAGCAAAGGAAAGTCATCATCGGAAATTCGTTGGTATGTTGTCTGTATCAATTTAGAAGTCTGTGAATAGACAAACAGCCAAACATGGATGCTGATAATAATGGAATAAGTTGTGCCCATGCACCTTGCTGTAATGAGGCTTGTATATT-GCTTCAACTACAAACTGTACCAAAAAACAAATTGCAAACCAATAATTTGCCGATGCAAAAGGAAATATCACAAATTCTGTATACAAGCTTAATGCTGTCTCACAGTGGATCAAATTTTATGCTTGCATAATTCCATCCTACCAATGCTGGAAACCTCCTCTCTATAACTAATCATCTAATCATACAGAAGCTCAAAATTATACCGAGTGTGAAGTTGACAACTTGACACCATTCTCCATACTCCATAGCCTAAGGAGACTTCACCGGCCGGCCATGGCCGCCGAGCCCGACGACCCCCTCCACCGCCGAGATGATCTGCGGCACCGACATCCCGCCGGAGAGGACGATCTCGATGGCCTCGCGGACGGAGAGGTCGGGGACGATGACGTCGGCGCGGCTCATGAGGAAGATGTCGCCGAGGTAGAGGTTGTTCGTCGGCACGTACACGCAGGCGAGCTCCCGGCCGCCGCCGGCGCCACTGCCTCCGCCGCGGCGGCCGTCGGCGACGCCGCGCAGCGTCAGCGTCGACGTGATGAATCCCAGCGCGTACTCGCCTATCCTCGGGTGACGTATGATCACCACCTCCTTGAACGCCCGTGAGCTCTGGTCTGAATTGAGCACGAAATCAATCTGGTGAGATTGCAGCGCTGATTTGCTTCGAAGAAGAGTAGATGTGCCGAACCAGCGGCGTCTTCTTGATGAAGAGCTCGCCGAGGCCGAGAAGAGATGCTCCCAGCCACGACGACATGAACACGCCGGCGAGGAAGATGAAGGTGATCGACGTCGCAAACCCCAAACCGAAGACATTGATGCCGAGATGGATGTAGATCGGGGAGAAGAAGCCGTCGACGACGCGGATGAACCACCAGGTGGTGTAGAATGTGATGGCAATGGGGAGCAAGATGACACATCCAGTCATGAACTTCTTCCATGCCCAGCTGCGTATCACCCTTGAAAATGCCTCACCTCGATGCCGGTACGGTGGCGGTGGATATGGTGGCCGCGCGCCGACGACGGCAGCGGCGGCGGCGAGCCGGCCGCCACGATCCCTACCGGCAGCAGCGACGACGTCTCCTCCTCGTGGCCTCCGGCGGCAACAGCGGCGGCGGCGCGGTCGGCTGCCACCGGGATGAGCAGCAGCTGATCCTTGTCCCGGTCCCT] [+] EMBL AK060431 [ACTGCTACCTCTCACGTCTCACCCACACCTACCCAATCTCCCGGTGCGCAGCGGCGAGCGACATGGAGCTCCGCGAGCTCGGCGCCACGGGCCTCCGCGTCAGCCCCGTCGGCTTCGGCGCCTCCCCTCTCGGCCATGTCTTCGGCGACGTCCCCCGCGACGTCGCCCGCGCCGCCGTCCGCCGCGCCCTCGACCTCGGCATCAACTTCTTCGACACCTCCCCGTACTACGGCGGCACGGTGTCGGAGTCGGTGCTCGGGGACTGCCTCCGCGCCGCGGGCGTGCCGCGGGACCGGTTCGTGGTCGCCACCAAGTGCGGGCGCTACAGGGAAGGGTTCGACTTCAGCGCCGCCCGCGTCACCCGCAGCGTCGACGAGAGCCTCGCACGCCTCGGCCTCGACTACGTCGACATCCTCCACTGCCACGACATCGAGTTCACCGACCTCGACCAGATTGTGAATGAGACGATTCCGGTGCTCCAGAAGATCAAGGAGAGCGGGAAGGCGCGGTTCATCGGGATAACCGGGCTGCCATTGAGCATCTACACTTATGTGCTCGACCAGGTGCCGCCAGGTTCTGTGGATGTGATTCTGTCTTACTGCCACTATGGGATCAATGATACCGCGCTTGTGGATTTGCTTCCCTACCTGAAGAGCAAAGGTGTTGGCGTGATCAGTGCTTCACCTCTTGCAATGGGGCTTCTTACAGATAACGGGCCACCCGAATGGCACCCTGCACCGAAAGAACTAAAGTTGGCATGCAGGGCAGCAGCAGATCACTGTAAGAAGAAGGGGAAAAACATTACAAAGCTAGCTATGCAGTACAGCTTGATGAACAATGAGATTTCCACGGTTCTTGTTGGAATGAACTCTCCAGAACAGGTAGAGGAGAATGTGGCTGCTGCAATTGAATTGTCTACTTCCGGTATTGATAAAGAACTTCTGCACGAAGTTGAAGCAATTCTTGAG CCTGTCAAGAACATGACCTGGT CCAGTGGCATTGAG CAAGCCTGAT ATCTGGCAG CAGCCTGGCTCATTATAATTCATTC ATGTATTCATTGAGTCAATTGTTTGCATTGCAATATTTCAATGGTGAGCAAAGGAAAGTCATCATCGGAAATTCGTTGGTATGTTGTCTGTATCAATTTAGAAGTCTGTGAATAGACAAACAGCCAAACATGGATGCTGATAATAATGGAATAAGTTGTGCCCATGC ] [+] EMBL AK067039 [ GTCTCACCCACACCTACCCAATCTCCCGGTGCGCAGCGGCGAGCGACATGGAGCTCCGCGAGCTCGGCGCCACGGGCCTCCGCGTCAGCCCCGTCGGCTTCGGCGCCTCCCCTCTCGGCCATGTCTTCGGCGACGTCCCCCGCGACGTCGCCCGCGCCGCCGTCCGCCGCGCCCTCGACCTCGGCATCAACTTCTTCGACACCTCCCCGTACTACGGCGGCACGGTGTCGGAGTCGGTGCTCGGGGACTGCCTCCGCGCCGCGGGCGTGCCGCGGGACCGGTTCGTGGTCGCCACCAAGTGCGGGCGCTACAGGGAAGGGTTCGACTTCAGCGCCGCCCGCGTCACCCGCAGCGTCGACGAGAGCCTCGCACGCCTCGGCCTCGACTACGTCGACATCCTCCACTGCCACGACATCGAGTTCACCGACCTCGACCAGATTGTGAATGAGACGATTCCGGTGCTCCAGAAGATCAAGGAGAGCGGGAAGGCGCGGTTCATCGGGATAACCGGGCTGCCATTGAGCATCTACACTTATGTGCTCGACCAGGTGCCGCCAGGTTCTGTGGATGTGATTCTGTCTTACTGCCACTATGGGATCAATGATACCGCGCTTGTGGATTTGCTTCCCTACCTGAAGAGCAAAGGTGTTGGCGTGATCAGTGCTTCACCTCTTGCAATGGGGCTTCTTACAGATAACGGGCCACCCGAATGGCACCCTGCACCGAAAGAACTAAAGTTGGCATGCAGGGCAGCAGCAGATCACTGTAAGAAGAAAGGGAAAAACATTACAAAGCTAGCTATGCAGTACAGCTTGATGAACAATGAGATTTCCACGGTTCTTGTTGGAATGAACTCTCCAGAACAGGTAGAGGAGAATGTGGCTGCTGCAATTGAATTGTCTACTTCCGGTATTGATAAAGAACTTCTGCACGAAGTTGAAGCAATTCTTGAG CCTGTCAAGAACATGACCTGGT CCAGTGGCATTGAG CAAGCCTGAT ATCTGGCAG CAGCCTGGCTCATTATAATTCATTC ATGTATTCATTGAGTCAATTGTTTGCATTGCAATATTTCAATGGTGAGCAAAGGAAAGTCATCATCGGAAATTCGTTGGTATGTTGTCTGTATCAATTTAGAAGTCTGTGAATAGACAAACAGCCAAACATGGATGCTGATAATAATGGAATAAGTTGTGCCCATGCACCTTGCTGTAATGAGGCTTGTATATT GCTTCAACTACAAACTGTACCAAAAAACAAATTGCAAACCAATAATTTGCCGATGCAAA ] [+] EMBL AU077824 [ CACCCACACCTACCCAATCTCCCGGTGCGCA CGGCGAGCGACATGGAGCTCCGCGAGCTCGGCGCCACGGGCCTCCGCGTCAGCCCCGTCGGCTTCGGCGCCTCCCCTCTCGGCCATGTCTTCGGCGACGTCCCCCGCGACGTCGCCCGCGCCGCCGTCCGCCGCGCCCTCGACCTCGGCATCAACTTCTTCGACACCTCCCCGTACTACGGCGGCACGGTGTCGGAGTCGGTGCTCGGGGACTGCCTCCGCGCCGC GGCGTGCCGCGGGACCGGTTCGTGGTCGCCACCAAGTGCGGGCGCTACAGGGAAGGGTTCGACTTCAGCGCCGCCCGCGTCACCCGCAGCGTCGACGAGAG CTCGCACG CTCGGCCTCGACTACGTCGACAT CTCCACTGCCACGACATCGAGTTCAACGAACTCGAACANATTGTGAATGAGAAGATTCn ] [+] EMBL CB618586 [ AATCTCCCGGTGCGCAGCGGCGAGCGACATGGAGCTCCGCGAGCTCGGCGCCACGGGCCTCCGCGTCAGCCCCGTCGGCTTCGGCGCCTCCCCTCTCGGCCATGTCTTCGGCGACGTCCCCCGCGACGTCGCCCGCGCCGCCGTCCGCCGCGCCCTCGACCTCGGCATCAACTTCTTCGACACCTCCCCGTACTACGGCGGCACGGTGTCGGAGTCGGTGCTCGGGGACTGCCTCCGCGCCGCGGGCGTGCCGCGGGACCGGTTCGTGGTCGCCACCAAGTGCGGGCGCTACAGGGAAGGGTTCGACTTCAGCGCCGCCCGCGTCACCCGCAGCGTCGACGAGAGCCTCGCACGCCTCGGCCTCGACTACGTCGACATCCTCCACTGCCACGACATCGAGTTCACCGACCTCGACCAGATTGTGAATGAGACGATTCCGGTGCTCCAGAAGATCAAGGAGAGCGGGAAGGCGCGGTTCATCGGGATAACCGGGCTGCCATTGAGCATCTACACTTATGTGCTCGACCGGGTGCCGCCAGGTTCTGTGGATGTGATTCTGTCTTACTGCCACTATGGGATCAATGATACCGCGCTTGTGGATTTGCTTCCCTACCTGAAGAGCAAAGGTGTTGGTGTGATCAGTGCTTCACCTCTTGCAATGGGGCTTCTTACAGATAACGGGCCACCCGAATGGCACCCTGCACCGAAAGAACTAAAGTTGGCATGCAGCGCAGCAGCAGATCACTGTAAGAAGAAAGGGAAAAACATTACAAAGCTAGCTATGCAGTACA ] [+] EMBL CB618659 [ AATCTCCCGGTGCGCAGCGGCGAGCGACATGGAGCTCCGCGAGCTCGGCGCCACGGGCCTCCGCGTCAGCCCCGTCGGCTTCGGCGCCTCCCCTCTCGGCCATGTCTTCGGCGACGTCCCCCGCGACGTCGCCCGCGCCGCCGTCCGCCGCGCCCTCGACCTCGGCATCAACTTCTTCGACACCTCCCCGTACTACGGCGGCACGGTGTCGGAGTCGGTGCTCGGGGACTGCCTCCGCGCCGCGGGCGTGCCGCGGGACCGGTTCGTGGTCGCCACCAAGTGCGGGCGCTACAGGGAAGGGTTCGACTTCAGCGCCGCCCGCGTCACCCGCAGCGTCGACGAGAGCCTCGCACGCCTCGGCCTCGACTACGTCGACATCCTCCACTGCCACGACATCGAGTTCACCGACCTCGACCAGATTGTGAATGAGACGATTCCGGTGCTCCAGAAGATCAAGGAGAGCGGGAAGGCGCGGTTCATCGGGATAACCGGGCTGCCATTGAGCATCTACACTTATGTGCTCGACCGGGTGCCGCCAGGTTCTGTGGATGTGATTCTGTCTTACTGCCACTATGGGATCAATGATACCGCGCTTGTGGATTTGCTTCCCTACCTGAAGAGCAAAGGTGTTGGTGTGATCAGTGCTTCAACTCTTGCAATGGGGCTTCT ] [+] EMBL AK102223 [ TCCCGGTGCGCAGCGGCGAGCGACATGGAGCTCCGCGAGCTCGGCGCCACGGGCCTCCGCGTCAGCCCCGTCGGCTTCGGCGCCTCCCCTCTCGGCCATGTCTTCGGCGACGTCCCCCGCGACGTCGCCCGCGCCGCCGTCCGCCGCGCCCTCGACCTCGGCATCAACTTCTTCGACACATCCCCGTACTACGGCGGCACGGTGTCGGAGTCGGTGCTCGGGGACTGCCTCCGCGCCGCGGGCGTGCCGCGGGACCGGTTCGTGGTCGCCACCAAGTGCGGGCGCTACAGGGAAGGGTTCGACTTCAGCGCCGCCCGCGTCACCCGCAGCGTCGACGAGAGCCTCGCACGCCTCGGCCTCGACTACGTCGACATCCTCCACTGCCACGACATCGAGTTCACCGACCTCGACCAGATTGTGAATGAGACGATTCCGGTGCTCCAGAAGATCAAGGAGAGCGGGAAGGCGCGGTTCATCGGGATAACCGGGCTGCCATTGAGCATCTACACTTATGTGCTCGACCAGGTGCCGCCAGGTTCTGTGGATGTGATTCTGTCTTACTGCCACTATGGGATCAATGATACCGCGCTTGTGGATTTGCTTCCCTACCTGAAGAGCAAAGGTGTTGGCGTGATCAGTGTTTCACCTCTTGCAATGGGGCTTCTTACAGATAACGGGCCACCCGAATGGCACCCTGCACCGAAAGAACTAAAGTTGGCATGCAGGGCAGCAGCAGATCACTGTAAGAAGAAGGGGAAAAACATTACAAAGCTAGCTATGCAGTACAGCTTGATGAACAATGAGATTTCCACGGTTCTTGTTGGAATGAACTCTCCAGAACAGGTAGAGGAGAATGTGGCTGCTGCAATTGAATTGTCTACTTCCGGTATTGATAAAGAACTTCTGCACGAAGTTGAAGCAATTCTTGAG CCTGTCAAGAACATGACCTGGT CCAGTGGCATTGAG CAAGCCTGAT ATCTGGCAG CAGCCTGGCTCATTATAATTCATTC ATGTATTCATTGAGTCAATTGTTTGCATTGCAATATTTCAATGGTGAGCAAAGGAAAGTCATCATCGGAAATTCGTTGGTATGTTGTCTGTATCAATTTAGAAGTCTGTGAATAGACAAACAGCCAAACATGGATGCTGATAATAATGGAATAAGTTGTGCCCATGCACCTTGCTGTAATGAGGCTTGTATATT GCTTCAACTACAAACTGTACCAAAAAACAAATTGCAAACCAATAATTTGCCG ] [+] EMBL CA767215 [ AAGGGGAGCGGGAAGGCGCGGTTCATCGGGATAACCGGGCTGCCATTGAGCATCTACACTTATGTGCTCGACCGGGTGCCGCCAGGTTCTGTGGATGTGATTCTGTCTTACTGCCACTATGGGATCAATGATACCGCGCTTGTGGATTTGCTTCCCTACCTGAAGAGCAAAGGTGTTGGCGTGATCAGTGCTTCACCTCTTGCAATGGGGCTTCTTACAGATAACGGGCCACCCGAATGGCACCCTGCACCGAAAGAACTAAAGTTGGCATGCAGGGCAGCAGCAGATCACTGTAAGAAGAAGGGGAAAAACATTACAAAGCTAGCTATGCAGTACAGCTTGATGAACAATGAGATTTCCACGGTTCTTGTTGGAATGAACTCTCCAGAACAGGTAGAGGAGAATGTGGCTGCTGCAATTGAATTGTCTACTTCCGGTATTGATAAAGAACTTCTGCACGAAGTTGAAGCAATTCTTGAG CCTGTCAAGAACATGACCTGGT CCAGTGGCATTGAG CAAGCCTGAT ATCTGGCAG CAGCCTGGCTCATTAAAATTCATTCTATGTATTCATTGAGTCAATTGTTTGCATTGCAATATTTCAATGGTGAGCAAAGGAAAGTCATCATCGGAAGTTCGTTGGTATGTTGTCTGTACCAATTTAGAAGTCTGTGAATAGACAAACAGCCAAACATGGATGCTGATAATAATGGAATAAGTTGTGCCCATGCACCTTGCTGTAATGANGCTTGNATATTGGCTTCAATTACAAACTGTACC AAACAAATTGCACACCAATAATTTGCTGATGC AACGGNAATATCACAAATTCTGT ] [+] EMBL AU077825 [ ttAGAAGAAGGGGGAAAACATTACCAAGCTAGCTATGCAGTACCGCTTGATGAACAATGAGATTTCCACGGTNCTTGTTGGAATGAACTCTCCAGAACAGGTAGAGGAGAATGTGGCTGCTGCAATTGAATTGTCTACTTCCGGTATTGATAAAGAACTTCTGCACGAAGTTGAAGCAATTCTTGAG CCTGTCAAGAACATGACCTGGT CCAGTGGCATTGAG CAAGCCTGAT ATCTGGCAG CAGCCTGGCTCATTATAATTCATTC ATGTATTCATTGAGTCAATTGTTTGCATTGCAATATTTCAATGGTGAGCAAAGGAAAGTCATCATCGGAAATTCGTTGGTATGTTGTCTGTATCAATTTAGAAGTCTGTGAATAGACAAACAGCCAAACATGGATGCTGATAATAATGGAATAAGTTGTGCCCATGCACCTTGCTGTAATGAGGCTTGTATATT GCTTCAACTACAAACTGTACCAAAAAACAAATTGCAAACCAATAATTTGCCGATGCAAAAGGAAAaaa ] [+] EMBL AU082719 [ GAGNCCTGTCAAGAACATGACCTGGTCCCAGTGGCATTGAGCCAAGCCTGATAATCTGGCAGTCAGCCTGGCTCATTATAATTCATTC ATGTATTCATTGAGTCAATTGTTTGCATTGCAATATTTCAATGGTGAGCAAAGGAAAGTCATCATCGGAAATTCGTTGGTATGTTGTCTGTATCAATTTAGAAGTCTGTGAATAGACAAACAGCCAAACATGGATGCTGATAATAATGGAATAAGTTGTGCCCATGCACCTTGCTGTAATGAGGCTTGTATATT GCTTCAACTACAAACTGTACCAAAAAACAAATTGCAAACCAATAATTTGCCGATGCAAAAGGAAATATCACAAAaaaaa ] [-] EMBL AK069386 [ GGCTTGTATATT GCTTCAACTACAAACTGTACCAAAAAACAAATTGCAAACCAATAATTTGCCGATGCAAAAGGAAATATCACAAATTCTGTATACAAGCTTAATGCTGTCTCACAGTGGATCAAATTTTATGCTTGCATAATTCCATCCTACCAATGCTGGAAACCTCCTCTCTATAACTAATCATCTAATCATACAGAAGCTCAAAATTATACCGAGTGTGAAGTTGACAACTTGACACCATTCTCCATACTCCATAGCCTAAGGAGACTTCACCGGCCGGCCATGGCCGCCGAGCCCGACGACCCCCTCCACCGCCGAGATGATCTGCGGCACCGACATCCCGCCGGAGAGGACGATCTCGATGGCCTCGCGGACGGAGAGGTCGGGGACGATGACGTCGGCGCGGCTCATGAGGAAGATGTCGCCGAGGTAGAGGTTGTTCGTCGGCACGTACACGCAGGCGAGCTCCCGGCCGCCGCCGGCGCCACTGCCTCCGCCGCGGCGGCCGTCGGCGACGCCGCGCAGCGTCAGCGTCGACGTGATGAATCCCAGCGCGTACTCGCCTATCCTCGGGTGACGTATGATCACCACCTCCTTGAACGCCCGTGAGCTCTGGTCTGAATTGAGCACGAAATCAATCTGGTGAGATTGCAGCGCTGATTTGCTTCGAAGAAGAGTAGATGTGCCGAACCAGCGGCGTCTTCTTGATGAAGAGCTCGCCGAGGCCGAGAAGAGATGCTCCCAGCCACGACGACATGAACACGCCGGCGAGGAAGATGAAGGTGATCGACGTCGCAAACCCCAAACCGAAGACATTGATGCCGAGATGGATGTAGATCGGGGAGAAGAAGCCGTCGACGACGCGGATGAACCACCAGGTGGTGTAGAATGTGATGGCAATGGGGAGCAAGATGACACATCCAGTCATGAACTTCTTCCATGCCCAGCTGCGTATCACCCTTGAAAATGCCTCACCTCGATGCCGGTACGGTGGCGGTGGATATGGTGGCCGCGCGCCGACGACGGCAGCGGCGGCGGCGAGCCGGCCGCCACGATCCCTACCGGCAGCAGCGACGACGTCTCCTCCTCGTGGCCTCCGGCGGCAACAGCGGCGGCGGCGCGGTCGGCTGCCACCGGGATGAGCAGCAGCTGATCCTTGTCCCGGTCCCT] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||