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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 988 fasta sequence
[CTTTGCCCCTGGAAATTGGAATTCAACTGGCCACATAACTCATTCCATTTCCACGCACAAACAAACGCCAAAAATCGCCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG-TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG-TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCT-AAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATGAAATTTGCTTGTGCTAAGCCTTCAAAAA]
[+] EMBL AK061573 [CTTTGCCCCTGGAAATTGGAATTCAACTGGCCACATAACTCATTCCATTTCCACGCACAAACAAACGCCAAAAATCGCCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCT AAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATTTTAGCAGCCTGTCTGGTAAGATTGCCTGACGGTATTGGACGCCATTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATGAAATTTGCTTGTG ]
[+] EMBL CF291147 [ TCCACGCACAAACAAACGCCAAAAATCGCCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTG ]
[+] EMBL AK099156 [ ACAAACGCCAAAAATCGCCGAGAAGAATCCGGAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCT AAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATGA ]
[+] EMBL CF292742 [ CCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTG ]
[+] EMBL AU057509 [ GAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGACGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCA CTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTTCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATAC ]
[+] EMBL CB683783 [ GAGAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAAATCTATGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACGATTCCGCGACGGGTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCACCACTGCTATCTACTTCCTGCTTCCATCGGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCGCGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCTTCGGTCCACACCTGGAGGCTGGACAGCGTCCCCACTATACCGGGCCACCAAATGTGTGGATCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCACCGTTCTTGTCGAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTACTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCT AAAGCAGAACCGTTCCTCAAGTACCTTATT ]
[-] EMBL CF291148 [ GATGTGAAATCCATTGCTCCT AAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAACCATGTTTTGAGCTCAACATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATGAAATTTGCTTGTGCTAAGCCTTCAAAAA]
consensusID : consensus_12579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 660 fasta sequence
[CAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTCATCGGTCCACACCTGGAGG-CTGGCCAGCGTCCCCAGTATA-CCGT-GCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATT-TTAGC-AGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCA-TTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACA-CTCTCCTGTACGAAAA-CAGAATAAAACACT-GGCAATGTTGAGATGAAAAAAAAAAAAAGA]
[-] EMBL CB683393 [CAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTCATCGGTCCACACCTGGAGG CTGGCCAGCGTCCCCAGTATA CCGT GCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATT TTAGC AGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCA TTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACA CTCTCCTGTACGAAAA CAGAATAAAACACT GGCAATGTTGAGATGAAAAAAAAAAAAAGA]
[+] EMBL BM038958 [ CAC CCTGGAGGTCTGCCCAGCGTCCCCAGTATACCCGTGGCCNCCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCCATTTTGATGATGTGAAATCCCTTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATTCTTAGCNCGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCACTTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACANCTCTCCTGTACGAAAACCAGAATAAAACCCTCGGCCATGTTGAGATGAAAAAAAAAAA ]
[-] EMBL CF292743 [ CACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATT TAAAC AGCCTGTCTGGCAAAAAAAAAT ACGGTATTGGACGCCA TTTTTAGTGTGATTGCTTCGGGTTTG GATCTT TCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACA CTCTCCTGTACG ]
[+] EMBL AU173960 [ GTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATNTGATGGCAGCGTTNTTGTCAAGTNTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTNGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATT TTAGC AGCCTGTNTGGCAAGATTGCCTGACGGTATTGGACGCCA TTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACA CTNTCCTGTACGAAAA CAGAATAAAACACT GGCAATGTTGAGATGAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12579#0 CTTTGCCCCTGGAAATTGGAATTCAACTGGCCACATAACTCATTCCATTTCCACGCACAA 60
consensus_12579#1 ------------------------------------------------------------
consensus_12579#0 ACAAACGCCAAAAATCGCCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACC 120
consensus_12579#1 ------------------------------------------------------------
consensus_12579#0 GGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGAT 180
consensus_12579#1 ------------------------------------------------------------
consensus_12579#0 GGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCC 240
consensus_12579#1 ------------------------------------------------------------
consensus_12579#0 GGAGGGCGGCTACTACACCGAGACGTTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCA 300
consensus_12579#1 ------------------------------------------------------------
consensus_12579#0 GCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCC 360
consensus_12579#1 ---------------CAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCC 45
*********************************************
consensus_12579#0 ATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAA 420
consensus_12579#1 ATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAA 105
************************************************************
consensus_12579#0 GGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTCAT 480
consensus_12579#1 GGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTCAT 165
************************************************************
consensus_12579#0 CGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTT 540
consensus_12579#1 CGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTT 225
************************************************************
consensus_12579#0 CGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAA 600
consensus_12579#1 CGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAA 285
************************************************************
consensus_12579#0 GTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGG 660
consensus_12579#1 GTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGG 345
************************************************************
consensus_12579#0 CTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAA 720
consensus_12579#1 CTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAA 405
************************************************************
consensus_12579#0 GGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAA 780
consensus_12579#1 GGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAA 465
************************************************************
consensus_12579#0 CATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTT 840
consensus_12579#1 CATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTT 525
************************************************************
consensus_12579#0 AGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTG 900
consensus_12579#1 AGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTG 585
************************************************************
consensus_12579#0 GTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATG 960
consensus_12579#1 GTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATG 645
************************************************************
consensus_12579#0 AAATTTGCTTGTGCTAAGCCTTCAAAAA 988
consensus_12579#1 AAAAAAAAAAAAAGA------------- 660
***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||