These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2155 fasta sequence [CCACTCCCCCCCAAAAAAATCCAAACCGAGAAATAATAATCACAATAAAACTAAAAAGAAATCCGGGCCTAACGGGCCGCGCGGCCCAACCCCCAACCCCAACGTAATAACGTATCATTCCGCGTCTCGAACTTTCCACCTCTCCCAAATAATTTTCTTCTTTCCCCTTTTTTTCTCCTCTCCCCTTCGACTCAGTCTCGCACCGAAGAAGAAGAAGAGAGGAAGAAGACGCGACGATTGACGAGTAATCGAGCTCGATTTGAGCACCCCCGCGCGCGGATCCGCCGATCTAGTTCAGTGGAGATGAGTCGCGCACACGGTAGTCCCAGATCGTTCTTCCCTGTGGGGAATCCCTTTCGAGTTATGTTTCCAGGGGGAGCTCACCTATCTCGGAAGCTCCAAGAGTTGCTCGCTTCGTACGAGGATGCCCTGGCATTGAGCTTGAGGAAGCTCAAGCCGGAGGCCGCCTCGGATGTCCTCACCTTGTCATGGATGAGGCTTGCAGTGGATTGCTTGTCAGAGCTGCACACCAACATAGCTAACCTGATAACCGATCTCGAGCTGCCTGTCTCGGACTGGGATGACAAATGGGTGGACATTTATCTCAACAGCAGCGTGAAGCTGCT-GGATATTT-GCATCGCGCTGAGCTC-GGAGCTCTCTCGTCTGGATCAAGGGCAATTGCTGTTGCAGTATGCCCTGCATGTGTTGGGCTCGGAGAGTGGCGTGCCGTCGCAGGAGCAACTCAAGAGAGCTGAGCCATCACTTAGGGAGTGGATGGAGCTGGTGGGCGTAAGATGTGCAAGGCTTGTTAGCTGCTCGGCGACCTTGCAGGAGCTTGCTGGGAACCTTTCTCTGATGAAGGTCAAGAACTCCGCGAAAGGGAAAGTGCTCATGAGAGCGTTATATGGAATCGAGTCTGTGACGGTGTTCGTATGCAGTATTTTTGTAGCTGTACTGTCTGGCAGCCCCAAGCCACTGGTGGAGTTGCATGTCCCTGAAAAATTTGGTTGGTCTCAGGCCTTCAATGACCTTCATACTGCAGTCAGTGAGGAACTCACAAGACAATTATCCGGTGGAAGTGTTGCAGCTGTAAAAGAGCTGGAAGAAGTTGAAGCATGTGCTAGAAGGCTGCATGTTTTGGCTAGCACTTCTCAGCTTGAAGAAGAAGCTGCCAACCTGGCAAATGCTGTTAGCCATACAGAGGAAGAGGTCATGTCAGACAGCATTGCGCAGGAAGGAGACCATCACTGTGGTCTTAAACTTGCTGATGACACTACCAGGGAGGGTGGAATAGTAATTTCAGAGAGTATTGCAGAAGGGGGAACACAAGAAGCTGAAATGAAGAAGGATATCAGCTATGAAAAGGAAGTGGCAATGGTTGAGAGAATCAGTTACAAAGAGCACCAAGATAGTAACGTAAAGCAGGCGAATGGCAGCAGCGATGAGAGCGCCCTGGTTGTTCCTGAGAGAACCAGTGTCCAGGAAAGCAAGGAGGAACTATTAAACTGCATATCCAGCATGTCGAAAAGCGCGGAGGGGCTCCGGCATGGGTTGGACTCCCTATCGAAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCAGATGCAGCAAGCAAGGTCGCCGAGGTCAGCTCTTGATATTTTATGTAAGGTTTCTTGCCGTATAATGT-TTGTGTGGCTAAGT-GTGCGCCCAGCTTGGTAGCA-CAGCTTTGAACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCT-GCTAGTTGTGCTTGT-GCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACTCAGCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTGGTAAGAGTTAGTGCTCTACTCG-TTGT-AGCGCAGGTCATA-TGCGAGTGT-ATA-GAGGCGTGAGTGTAGTAACTGTATGTAAGCTGGAGTGTGTTAGCAATATA-CGAGTAGATTAATGTGTTCTGCAAAGAGCAGATCATTGTGTGCTATTGCTGAA-CTAGCCAATGATATGGCCAACTTGTATTAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK102890 [CCACTCCCCCCCAAAAAAATCCAAACCGAGAAATAATAATCACAATAAAACTAAAAAGAAATCCGGGCCTAACGGGCCGCGCGGCCCAACCCCCAACCCCAACGTAATAACGTATCATTCCGCGTCTCGAACTTTCCACCTCTCCCAAATAATTTTCTTCTTTCCCCTTTTTTTCTCCTCTCCCCTTCGACTCAGTCTCGCACCGAAGAAGAAGAAGAGAGGAAGAAGACGCGACGATTGACGAGTAATCGAGCTCGATTTGAGCACCCCCGCGCGCGGATCCGCCGATCTAGTTCAGTGGAGATGAGTCGCGCACACGGTAGTCCCAGATCGTTCTTCCCTGTGGGGAATCCCTTTCGAGTTATGTTTCCAGGGGGAGCTCACCTATCTCGGAAGCTCCAAGAGTTGCTCGCTTCGTACGAGGATGCCCTGGCATTGAGCTTGAGGAAGCTCAAGCCGGAGGCCGCCTCGGATGTCCTCACCTTGTCATGGATGAGGCTTGCAGTGGATTGCTTGTCAGAGCTGCACACCAACATAGCTAACCTGATAACCGATCTCGAGCTGCCTGTCTCGGACTGGGATGACAAATGGGTGGACATTTATCTCAACAGCAGCGTGAAGCTGCT GGATATTT GCATCGCGCTGAGCTC GGAGCTCTCTCGTCTGGATCAAGGGCAATTGCTGTTGCAGTATGCCCTGCATGTGTTGGGCTCGGAGAGTGGCGTGCCGTCGCAGGAGCAACTCAAGAGAGCTGAGCCATCACTTAGGGAGTGGATGGAGCTGGTGGGCGTAAGATGTGCAAGGCTTGTTAGCTGCTCGGCGACCTTGCAGGAGCTTGCTGGGAACCTTTCTCTGATGAAGGTCAAGAACTCCGCGAAAGGGAAAGTGCTCATGAGAGCGTTATATGGAATCGAGTCTGTGACGGTGTTCGTATGCAGTATTTTTGTAGCTGTACTGTCTGGCAGCCCCAAGCCACTGGTGGAGTTGCATGTCCCTGAAAAATTTGGTTGGTCTCAGGCCTTCAATGACCTTCATACTGCAGTCAGTGAGGAACTCACAAGACAATTATCCGGTGGAAGTGTTGCAGCTGTAAAAGAGCTGGAAGAAGTTGAAGCATGTGCTAGAAGGCTGCATGTTTTGGCTAGCACTTCTCAGCTTGAAGAAGAAGCTGCCAACCTGGCAAATGCTGTTAGCCATACAGAGGAAGAGGTCATGTCAGACAGCATTGCGCAGGAAGGAGACCATCACTGTGGTCTTAAACTTGCTGATGACACTACCAGGGAGGGTGGAATAGTAATTTCAGAGAGTATTGCAGAAGGGGGAACACAAGAAGCTGAAATGAAGAAGGATATCAGCTATGAAAAGGAAGTGGCAATGGTTGAGAGAATCAGTTACAAAGAGCACCAAGATAGTAACGTAAAGCAGGCGAATGGCAGCAGCGATGAGAGCGCCCTGGTTGTTCCTGAGAGAACCAGTGTCCAGGAAAGCAAGGAGGAACTATTAAACTGCATATCCAGCATGTCGAAAAGCGCGGAGGGGCTCCGGCATGGGTTGGACTCCCTATCGAAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCAGATGCAGCAAGCAAGGTCGCCGAGGTCAGCTCTTGATATTTTATGTAAGGTTTCTTGCCGTATAATGT TTGTGTGGCTAAGT GTGCGCCCAGCTTGGTAGCA CAGCTTTGAACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCT GCTAGTTGTGCTTGT GCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACTCAGCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTGGTAAGAGTTAGTGCTCTACTCG TTGT AGCGCAGGTCATA TGCGAGTGT ATA GAGGCGTGAGTGTAGTAACTGTATGTAAGCTGGAGTGTGTTAGCAATATA CGAGTAGATTAATGTGTTC ] [+] EMBL AU055880 [ CTTTCCCCTTTTTTTCTCCTCTCCCCTTCGACTCAGTCTCGCACCGAAGAAGAAGAAGAGAGGAAGAAGACGCGACGATTGACGAGTAATCGAGCTCGATTTGAGCACCCCCGCGCGCGGATCCGCCGATCTAGTTCAGTGGAGATGAGTCGCGCACACGGTAGTCCCAGATCGTTCTTCCCTGTGGGGAATCCCTTTCGAGTTATGTTTCCAGGGGGAGCTCACCTATCTCGGAAGCTCCAAGAGTTGCTCGCTTCGTACGAGGATGCCCTGGCATTGAGCTTGAGGAAGCTCAAGCCGGAGGNCGCCTCGGATGTCCTCACCTTGTCATGGATGAGGCTTGCAGTGGATTGCTTGTCAGAGCTGCACACCAACATAGCTAACCTGATAACCGATCTCGAGCTGCCTGTCTCGGACTGGGATGACAAATGGGTGGACATTTATCTCAACAGCAGCGTGAAGCTGCTGGGATATTTGGCATCGTGCTGAGCTCGGGAGCTCTCTCGTCTGGATCAAGGGCAATTGCTGTTGCAGTATGCCCTGCATGTGTTGGGCTCGGAGAGTGGCGTGCCGTCGCAGGAGCAACTCAAGAGAGCTGAGCCATCACTTAGGGAGTGGATGGAGCTGGTGGGCGTAAGATGTGCAAGGCTTGTTAGCTGCTCGGCGACCTTGCANGAGCTTGCTGGGAACC ] [+] EMBL CB645359 [ TTTCCCCTTTGTTTCTCCTCTCCCCTTCGACTCAGTCTCGCACCGAAGAAGAAGAAGAGAGGAAGAAGACGCGACGATTGACGAGTAATCGAGCTCGATTTGAGCACCCCCGCGCGCGGATCCGCCGATCTAGTTCAGTGGAGATGAGTCGCGCACACGGTAGTCCCAGATCGTTCTTCCCTGTGGGGAATCCCTTTCGAGTTATGTTTCCAGGGGGAGCTCACCTATCTCGGAAGCTCCAAGAGTTGCTCGCTTCGTACGAGGATGCCCTGGCATTGAGCTTGAGGAAGCTCAAGCCGGAGGCCGCCTCGGATGTCCTCACCTTGTCATGGATGAGGCTTGCAGTGGATTGCTTGTCAGAGCTGCACACCAACATAGCTAACCTGATAACCGATCTCGAGCTGCCTGTCTCGGACTGGGATGACAAATGGGTGGACATTTATCTCAACAGCAGCGTGAAGCTGCT GGATATTT GCATCGCGCTGAGCTC GGAGCTCTCTCGTCTGGATCAAGGGCAATTGCTGTTGCAGTATGCCCTGCATGTGTTGGGCTCGGAGAGTGGCGTGCCGTCGCAGGAGCAACTCAAGAGAGCTGAGCCATCACTTAGGGAGTGGATGGAGCTGGTGGGCGTAAGATGTGCAAGGCTTGTTAGCTGCTCGGCGACCTTGCAGGAGCTTGCTGGGAACCTTTCTCTGATGAAGGTCAAGAACTCCGCGAAAGGGAAAGTGCTCATGAGAGCGTTATATGGAATCGAGTCTGTGACGGTGTTCGTATGCAGTATTTTTGTAGC ] [+] EMBL AU057003 [ AACTATTAAACTGCATATCCAGCATGTCGAAAAGCGCGGAGGGGCTCCGGCATGGGTTGGACTCCCTATCGAAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCAGATGCAGCAAGCAAGGTCGCCGAGGTCAGCTCTTGATATTTTATGTAAGGTTTCTTGCCGTATAATGT TTGTGTGGCTAAGT GTGCGCCCAGCTTGGTAGCA CAGCTTTGAACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCTGGCTAGTTGTGCTTGT GCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACTCAGCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTGGTAAGAGTTAGTGCTCTACTCG TTGT AGCGCAGGTCATA TGCGAGTGT ATA GAGGCGTGAGTGTAGTAACTGTATGTAAGCTGGAGTGTGTTAGCAATATA CGAGTAGATTAATGTGTTCTGCAAA ] [+] EMBL BQ906110 [ GGCTCCGGCATGGGTTGGACTCCCTATCGAAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCGGATGCAGCAAGCAAGGTCGCCGAGGTCAGTTCTTGATATGCTATGTAAGGTTTCCTGACGTGTAATGT TTATGTGGCT AGT GTGTGCACAGCTCGGCAGCA CAGCTTTGTACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACGGAAAGTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAATCCTGTGCT GCTAGTTGTGCTTGT GCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACTCAGCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTGGTAAGAGTTAGTGCTCTACTCG TTGT AGCGCAGGTCATA TGCGAGTGT ATA GAGGCGTGAGTGTAGTAACTGTATGTAAGCTGGAGTGTGTTAGCAATATA CGAGTAGATTAATGTGTTCTGCAAAGACCAGATCATTGTGTGCTATTGCTGAACCCCCCCAATGATATGGCCAACTTGTATTAAAAAAA ] [+] EMBL AU055881 [ CGAAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCAGATGCAGCAAGCAAGGTCGCCGAGGTCAGCTCTTGATATTTTATGTAAGGTTTCTTGCCGTATAATGT TTGTGTGGCTAAGT GTGCGCCCAGCTTGGTAGCA CAGCTTTGAACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACAGAAACTAAGCTGGGGCCACATCTCAGAAGCNTTGTGCATAGTCCTGTGCT GCTAGTTGTGCTTGT GCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACTCAGCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTGGTAAGAGTTAGTGCTCTACTCG TTGT AGCGCAGGTCATA TGCGAGTGT ATA GAGGCGTGAGTGTAGTAACTGTATGTAAGCTGGAGTGTGTTAGCAATATA CGAGTAGATTAATGTGTTCTGCAAAGAGCAGATCATTGTGTGCTATTGCTGAA CTAGCAAATGATATGGCCAACTTGTNTTCAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BQ907386 [ ATGTGTTATGTGGCT AGTGGTGTGCACAGCTCGGCAGCANCAGCTTTGTACCTTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACGGAAAGTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAATCCTGTGCT GCTAGTTGTGCTTGTGGCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACTCAGCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTGGTAAGAGTTAGTGCTCTACTCGCTTGT AGCGCAGGTCATATTGCGAGTGT ATA GAGGCGTGAGTGTAGTAACTGTATGTAAGCTGGAGTGTGTTAGCCATATACCGAGTAGATTAATGTGTTCTGCCAAGAGCAGATCCTTGTGTGCTATTGCTGAA CTAGCCAATGATATGGCCCACTTGTATTAAAAAAAAAA ] [+] EMBL BI807805 [ GAGTTAGTGCTCTACTCG TTGTGAGCGCAGGTCATA TGCGAGTGTGATATGAGGCGTGAGTGTAGTAACTGTATGTAAGCTGGAGTGTGTTAGCAATATA CGAGTAGATTAATGTGTTCTGCAAAGAGCAGATCATTGTGTGCTATTGCTGAA CTAG CAATGATATGGCCAACTTGTATTAAAAAAAAA ] consensusID : consensus_12601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 867 fasta sequence [ATCCCCGGGCTGAGGAAGTCGGCACGAGGGGAAGAAGACGCGACGATTGACGAGGTATCGAGCTCGAGCTGAGCCTTCCCGCGCGCGGATTCGCCGATCGAGTTCAGTGGAGATGAGTCGCGCACACGGTAGTCCCAGATCGTTCTTCCCTGTGGGGAATCCCTTTCGAGTTATGTTTCCGGGGGGAGCCCACCTATCTCGGAAGCTCCAAGAGTTGCTCGCTTCGTATGAGGATGCCCTGGCATTGAGCTTAAGGAAGCTCAAGCCGGAGGCCGCCTCGGATGTCCTCACCTTGTCATGGATGAGGCTTGCAGTGGATTGCTTGTCAGAGCTGCACACCAACATAGCGAACCTGATAACCGATCTCGAGCTGCCTGTCTCGGATTGGGATGACCAATGGGTGGACATCTATCTCAACAGCAGCCTGAAGCTGCTGGATATTTGCATCGCGCTGAGCTCAGAGCTGTCTCGTTGGGATCCAGGGCAGTTGCTTCTGCAGTATGCCCTGCATGTGTGGGGCTCGGAAAGTGGTGTGCCGTCGCCAGAGCCACTCCAGAGAACTGAGCCATTCCTTAGGGAGTGGATGAGCTGGTGGGCGTTGATGTCCAGGGCTGTTACCTGCCCACGACTTGCAGGACCCGCCGGGACCCTCTCGATTAAGGTAAACCCCGTGAAGGAAAGTGCCTTAGACCTATTGANTCAGTGGTACGGTCCATCNATTTGGTCGGATCGTGCCCCAACANGGTAGTCATCTCAAACGCGCTGCCCCCAACGCCATTTCGTTAACAAGGAACCGAGTTTCCAACGAAATCCTCTGGCTTCCNTTAAACCCCNGCCAGAGGTTGAACCGCAAATAAGAACGCACCT] [+] EMBL CA753338 [ATCCCCGGGCTGAGGAAGTCGGCACGAGGGGAAGAAGACGCGACGATTGACGAGGTATCGAGCTCGAGCTGAGCCTTCCCGCGCGCGGATTCGCCGATCGAGTTCAGTGGAGATGAGTCGCGCACACGGTAGTCCCAGATCGTTCTTCCCTGTGGGGAATCCCTTTCGAGTTATGTTTCCGGGGGGAGCCCACCTATCTCGGAAGCTCCAAGAGTTGCTCGCTTCGTATGAGGATGCCCTGGCATTGAGCTTAAGGAAGCTCAAGCCGGAGGCCGCCTCGGATGTCCTCACCTTGTCATGGATGAGGCTTGCAGTGGATTGCTTGTCAGAGCTGCACACCAACATAGCGAACCTGATAACCGATCTCGAGCTGCCTGTCTCGGATTGGGATGACCAATGGGTGGACATCTATCTCAACAGCAGCCTGAAGCTGCTGGATATTTGCATCGCGCTGAGCTCAGAGCTGTCTCGTTGGGATCCAGGGCAGTTGCTTCTGCAGTATGCCCTGCATGTGTGGGGCTCGGAAAGTGGTGTGCCGTCGCCAGAGCCACTCCAGAGAACTGAGCCATTCCTTAGGGAGTGGATGAGCTGGTGGGCGTTGATGTCCAGGGCTGTTACCTGCCCACGACTTGCAGGACCCGCCGGGACCCTCTCGATTAAGGTAAACCCCGTGAAGGAAAGTGCCTTAGACCTATTGANTCAGTGGTACGGTCCATCNATTTGGTCGGATCGTGCCCCAACANGGTAGTCATCTCAAACGCGCTGCCCCCAACGCCATTTCGTTAACAAGGAACCGAGTTTCCAACGAAATCCTCTGGCTTCCNTTAAACCCCNGCCAGAGGTTGAACCGCAAATAAGAACGCACCT] consensusID : consensus_12601#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence [TTAGCCATACAGAGGAAGAGGTCATGTCAGACAGCATTGCGCAGGAAGGAGACCATCACTGTGGTCTTAAACTTGCTGATGACACTACCAGGGAGGGTGGAATAGTAATTTCAGAGAGTATTGCAGAAGGGGGAACACAAGAAGCTGAAATGAAGAAGGATATCAGCTATGAAAAGGAAGTGGCAATGGTTGAGAGAATCAGTTACAAAGAGCACCAAGATAGTAACGTAAAGCAGGCGAATGGCAGCAGCGATGAGAGCGCCCTGGTTGTTCCTGAGAGAACCAGTGTCCAGGAAAGCAAGGAGGAACTATTAAACTGCATATCCAGCATGTCGAAAAGCGCGGAGGGGCTCCGGCATGGGTTGGACTCCCTATCGAAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCAGATGCAGCAAGCAAGGTCGCCGAGGTCAGCTCTTGATATTTTATGTAAGGTTTCTTGCCGTATAATGTTTGTGTGGCTAAGTGTGCGCCCAGCTTGGTAGCACAGCTTTGAACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCTGCTAGTTGTGCTTGTGCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACTCAGCCTGGGCAAGTCCTATACAGTCATTTTGTTTACTTAAAAAAAAAGGGA] [-] EMBL CB645360 [TTAGCCATACAGAGGAAGAGGTCATGTCAGACAGCATTGCGCAGGAAGGAGACCATCACTGTGGTCTTAAACTTGCTGATGACACTACCAGGGAGGGTGGAATAGTAATTTCAGAGAGTATTGCAGAAGGGGGAACACAAGAAGCTGAAATGAAGAAGGATATCAGCTATGAAAAGGAAGTGGCAATGGTTGAGAGAATCAGTTACAAAGAGCACCAAGATAGTAACGTAAAGCAGGCGAATGGCAGCAGCGATGAGAGCGCCCTGGTTGTTCCTGAGAGAACCAGTGTCCAGGAAAGCAAGGAGGAACTATTAAACTGCATATCCAGCATGTCGAAAAGCGCGGAGGGGCTCCGGCATGGGTTGGACTCCCTATCGAAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCAGATGCAGCAAGCAAGGTCGCCGAGGTCAGCTCTTGATATTTTATGTAAGGTTTCTTGCCGTATAATGTTTGTGTGGCTAAGTGTGCGCCCAGCTTGGTAGCACAGCTTTGAACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCTGCTAGTTGTGCTTGTGCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACTCAGCCTGGGCAAGTCCTATACAGTCATTTTGTTTACTTAAAAAAAAAGGGA] consensusID : consensus_12601#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [GCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCAGATGCAGCAAGCAAGGTCGCCGAGGTCAGCTCTTGATATTTTATGTAAGGTTTCTTGCCGTATAATGTTTGTGTGGCTAAGTGTGCGCCCAGCTTGGTAGCACAGCTTTGAACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCTGCTAGTTGTGCTTGTGCCGTGCAAATCTTCTAAGTCCATCGGCATCAGACTCTGTGACTGTAAACTCAGCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTGGTAAGAGTTAGTGCTCTACTCGTTGTAGCGCAGGTCATATGCGAGTGTATAGAGGCGTGAGTGTAGTAACTGTATGTAAGCTGGAGTGTGTTAGCAATATACGAGTAGATTAATGTGTTCTGCAAAGAGCAGATCATTGTGTGCTATTGCTGAACTAGCAAATGATATGGCCAACTTGTATTCATCGTGTGATTCTGATTGCTTGGCT] [+] EMBL AK063863 [GCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCAGATGCAGCAAGCAAGGTCGCCGAGGTCAGCTCTTGATATTTTATGTAAGGTTTCTTGCCGTATAATGTTTGTGTGGCTAAGTGTGCGCCCAGCTTGGTAGCACAGCTTTGAACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCTGCTAGTTGTGCTTGTGCCGTGCAAATCTTCTAAGTCCATCGGCATCAGACTCTGTGACTGTAAACTCAGCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTGGTAAGAGTTAGTGCTCTACTCGTTGTAGCGCAGGTCATATGCGAGTGTATAGAGGCGTGAGTGTAGTAACTGTATGTAAGCTGGAGTGTGTTAGCAATATACGAGTAGATTAATGTGTTCTGCAAAGAGCAGATCATTGTGTGCTATTGCTGAACTAGCAAATGATATGGCCAACTTGTATTCATCGTGTGATTCTGATTGCTTGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 CCACTCCCCCCCAAAAAAATCCAAACCGAGAAATAATAATCACAATAAAACTAAAAAGAA 60 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 ATCCGGGCCTAACGGGCCGCGCGGCCCAACCCCCAACCCCAACGTAATAACGTATCATTC 120 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 CGCGTCTCGAACTTTCCACCTCTCCCAAATAATTTTCTTCTTTCCCCTTTTTTTCTCCTC 180 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 TCCCCTTCGACTCAGTCTCGCACCGAAGAAGAAGAAGAGAGGAAGAAGACGCGACGATTG 240 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 ACGAGTAATCGAGCTCGATTTGAGCACCCCCGCGCGCGGATCCGCCGATCTAGTTCAGTG 300 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GAGATGAGTCGCGCACACGGTAGTCCCAGATCGTTCTTCCCTGTGGGGAATCCCTTTCGA 360 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GTTATGTTTCCAGGGGGAGCTCACCTATCTCGGAAGCTCCAAGAGTTGCTCGCTTCGTAC 420 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GAGGATGCCCTGGCATTGAGCTTGAGGAAGCTCAAGCCGGAGGCCGCCTCGGATGTCCTC 480 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 ACCTTGTCATGGATGAGGCTTGCAGTGGATTGCTTGTCAGAGCTGCACACCAACATAGCT 540 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 AACCTGATAACCGATCTCGAGCTGCCTGTCTCGGACTGGGATGACAAATGGGTGGACATT 600 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 TATCTCAACAGCAGCGTGAAGCTGCTGGATATTTGCATCGCGCTGAGCTCGGAGCTCTCT 660 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 CGTCTGGATCAAGGGCAATTGCTGTTGCAGTATGCCCTGCATGTGTTGGGCTCGGAGAGT 720 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GGCGTGCCGTCGCAGGAGCAACTCAAGAGAGCTGAGCCATCACTTAGGGAGTGGATGGAG 780 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 CTGGTGGGCGTAAGATGTGCAAGGCTTGTTAGCTGCTCGGCGACCTTGCAGGAGCTTGCT 840 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GGGAACCTTTCTCTGATGAAGGTCAAGAACTCCGCGAAAGGGAAAGTGCTCATGAGAGCG 900 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 TTATATGGAATCGAGTCTGTGACGGTGTTCGTATGCAGTATTTTTGTAGCTGTACTGTCT 960 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GGCAGCCCCAAGCCACTGGTGGAGTTGCATGTCCCTGAAAAATTTGGTTGGTCTCAGGCC 1020 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 TTCAATGACCTTCATACTGCAGTCAGTGAGGAACTCACAAGACAATTATCCGGTGGAAGT 1080 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GTTGCAGCTGTAAAAGAGCTGGAAGAAGTTGAAGCATGTGCTAGAAGGCTGCATGTTTTG 1140 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 -------------------------------------------------TTAGCCATACA 11 consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GCTAGCACTTCTCAGCTTGAAGAAGAAGCTGCCAACCTGGCAAATGCTGTTAGCCATACA 1200 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 GAGGAAGAGGTCATGTCAGACAGCATTGCGCAGGAAGGAGACCATCACTGTGGTCTTAAA 71 consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GAGGAAGAGGTCATGTCAGACAGCATTGCGCAGGAAGGAGACCATCACTGTGGTCTTAAA 1260 consensus_12601#1 ------------------------------------------------------------ consensus_12601#2 CTTGCTGATGACACTACCAGGGAGGGTGGAATAGTAATTTCAGAGAGTATTGCAGAAGGG 131 consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 CTTGCTGATGACACTACCAGGGAGGGTGGAATAGTAATTTCAGAGAGTATTGCAGAAGGG 1320 consensus_12601#1 ---------------------ATCCCCGGGCTGAGGAAGTCGGCACGAGGGGAAGAAGAC 39 consensus_12601#2 GGAACACAAGAAGCTGAAATGAAGAAGGATATCAGCTATGAAAAGGAAGTGGCAATGGTT 191 consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GGAACACAAGAAGCTGAAATGAAGAAGGATATCAGCTATGAAAAGGAAGTGGCAATGGTT 1380 consensus_12601#1 GCGACGATTGACGAGGTATCGAGCTCGAGCTGAGCCTTCCCGCGCGCGGATTCGCCGATC 99 consensus_12601#2 GAGAGAATCAGTTACAAAGAGCAC-CAAGATAGTAACGTAAAGCAGGCGAATGGCAGCAG 250 consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 GAGAGAATCAGTTACAAAGAGCAC-CAAGATAGTAACGTAAAGCAGGCGAATGGCAGCAG 1439 consensus_12601#1 GAGTTCAGTGGAGATGAGTCGCGCACACGGTAGTCCCAGATCGTTCTTCCCTGTGGGGAA 159 consensus_12601#2 CGATGAGAGCGCCCTGGTTGTTCCTGAGAGAACCAGTGTCCAGGAAAGCAAGGAGGAACT 310 consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 CGATGAGAGCGCCCTGGTTGTTCCTGAGAGAACCAGTGTCCAGGAAAGCAAGGAGGAACT 1499 consensus_12601#1 TCCCTTTCGAGTTATGTTTCCGGGGGGAGCCCACCTATCTCGGAAGCTCCAAGAGTTGCT 219 consensus_12601#2 ATTAAACTGCATATCCAGCATGTCGAAAAGCGCGGAGGGGCTCCGGCATGGGTTGGACTC 370 consensus_12601#3 ------------------------------------------------------------ consensus_12601#0 ATTAAACTGCATATCCAGCATGTCGAAAAGCGCGGAGGGGCTCCGGCATGGGTTGGACTC 1559 consensus_12601#1 CGCTTCGTATGAGGATGCCCTGGCATTGAGCTTAAGGAAGCTCAAGCCGGAGGCCGCCTC 279 consensus_12601#2 CCTATCGAAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATT-GC 429 consensus_12601#3 -----------GCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATT-GC 48 consensus_12601#0 CCTATCGAAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATT-GC 1618 consensus_12601#1 ---------GGATGTCCTCACCTTGTCATGGATGAGGCTTGCAGTGGATTGCTTGTCAGA 330 ** * *** * *** **** * * * * * consensus_12601#2 TCTGCAACCTCAGGATCTCAGATGCAGCAAGCAA-----GGTCGCCGAGGTCAGCTCTTG 484 consensus_12601#3 TCTGCAACCTCAGGATCTCAGATGCAGCAAGCAA-----GGTCGCCGAGGTCAGCTCTTG 103 consensus_12601#0 TCTGCAACCTCAGGATCTCAGATGCAGCAAGCAA-----GGTCGCCGAGGTCAGCTCTTG 1673 consensus_12601#1 GCTGCA-CACCAACATAGCGAACCTGATAACCGATCTCGAGCTGCCTGTCTCGGATTGGG 389 ***** * ** ** * * ** * * * *** ** * * * consensus_12601#2 ATATTTTATGTAAGG---TTTCTTGCCGTATAATGTTTGTGTGGCTAAGTGTGCGCCCAG 541 consensus_12601#3 ATATTTTATGTAAGG---TTTCTTGCCGTATAATGTTTGTGTGGCTAAGTGTGCGCCCAG 160 consensus_12601#0 ATATTTTATGTAAGG---TTTCTTGCCGTATAATGTTTGTGTGGCTAAGTGTGCGCCCAG 1730 consensus_12601#1 ATGACCAATGGGTGGACATCTATCTCAACAGCAGCCTGAAGCTGCTGGATATTTGCATCG 449 ** *** ** * * * * * * * * *** * * ** * consensus_12601#2 CTTGGTAGCACAGCTTTGAA-CATTGTGCTTCTGACCTGTGGCCCCTGC--TCAGCCCCA 598 consensus_12601#3 CTTGGTAGCACAGCTTTGAA-CATTGTGCTTCTGACCTGTGGCCCCTGC--TCAGCCCCA 217 consensus_12601#0 CTTGGTAGCACAGCTTTGAA-CATTGTGCTTCTGACCTGTGGCCCCTGC--TCAGCCCCA 1787 consensus_12601#1 CGCTG-AGCTCAGAGCTGTCTCGTTGGGATCCAGGGCAGTTGCTTCTGCAGTATGCCCTG 508 * * *** *** ** * *** * * * * * ** ** **** * **** consensus_12601#2 CAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCTGCTAGTTG 658 consensus_12601#3 CAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCTGCTAGTTG 277 consensus_12601#0 CAGAAACTAAGCTGGGGCCACATCTCAGAAGCATTGTGCATAGTCCTGTGCTGCTAGTTG 1847 consensus_12601#1 CATGTGTGGGGCTCGG---AAAGTGGTGTGCCGTCGC-CAGAGCCAC-TCCAGAGAACTG 563 ** *** ** * * * * * * ** ** * * * * * ** consensus_12601#2 TGCTTGTGCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACT-- 716 consensus_12601#3 TGCTTGTGCCGTGCAAATCTTCTAAGTCCATCGGCATCAGACTCTGTGACTGTAAACT-- 335 consensus_12601#0 TGCTTGTGCCGTGCAAATCTTCTAAGTCCATCGGCATCAGGCTCTGTGACTGTAAACT-- 1905 consensus_12601#1 AGCC-ATTCCTTAGGGAGTGGATGAGCTGGTGGGCGTTGATGTCCAGGGCTGTTACCTGC 622 ** * ** * * * ** * *** * ** * **** * ** consensus_12601#2 -CA-GCCTGGGCAAGTCCTATACAGTCATTTTGTTTACTTAAAA----AAAAAGGGA--- 767 consensus_12601#3 -CA-GCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTG----GTAAGAGTTAGT 389 consensus_12601#0 -CA-GCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTG----GTAAGAGTTAGT 1959 consensus_12601#1 CCACGACTTGCAGGACCCGCCGGGACCCTCTCGATTAAGGTAAACCCCGTGAAGGAAAGT 682 ** * ** * ** * * * * *** * * consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 GCTCTACTCGTTGTAGCGCAGGTCATATGCGAGTGTATAGAGGCGTGAGTGTAGTAACTG 449 consensus_12601#0 GCTCTACTCGTTGTAGCGCAGGTCATATGCGAGTGTATAGAGGCGTGAGTGTAGTAACTG 2019 consensus_12601#1 GCCTTAGACCTATTGANTCAG------TGGTACGGTCCATCNATTTGGTCGGATCGTGCC 736 consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 TATGTAAGCTGGAGTGTGTTAGCAATATACGAGTAGATTAATGTGTTCTGCAAAGAGCAG 509 consensus_12601#0 TATGTAAGCTGGAGTGTGTTAGCAATATACGAGTAGATTAATGTGTTCTGCAAAGAGCAG 2079 consensus_12601#1 CCAACANGGTAGTCATCTCAAACGCGCTGCCCCCAACGCCATTTCGTTAACAAGGAACCG 796 consensus_12601#2 ------------------------------------------------------------ consensus_12601#3 ATCATTGTGTGCTATTGCTGAACTAGCAAATGATATGGCCAACTTGTATTCATCGTGTGA 569 consensus_12601#0 ATCATTGTGTGCTATTGCTGAACTAGCCAATGATATGGCCAACTTGTATTAAAAAAAAAA 2139 consensus_12601#1 AGTTTCCAACGAAATCCTCTGGCTTCCNTTAAAC---CCCNGCCAGAGGTTGAACCGCAA 853 consensus_12601#2 ---------------- consensus_12601#3 TTCTGATTGCTTGGCT 585 consensus_12601#0 AAAAAAAAAAAAAAAA 2155 consensus_12601#1 ATAAGAACGCACCT-- 867 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||