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Oryza sativa
cluster # 12606 cluster # 12606       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12606#0 length = 1407 sequences # 4  
consensus_12606#1 length = 1137 sequences # 4  
consensus_12606#2 length = 790 sequences # 1  
consensus_12606#3 length = 557 sequences # 2  

consensusID : consensus_12606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1407
fasta sequence
                              [CGGGATAAACTGGATAAGATCTCTGCCTTATCTCCTTCCCTTCCCCTCCACAAACTCACTCACTCTCTCTCTCTGGATAAGGCCGAGAAGGCTGAGAAGAAGCCAGCCAGAAGGAAGGGATCGTCGTCGTCGTCTTCGGCGGCCGAGGAGGACGACGACGGCACGGCGTCGGTG-AGGTCAGGGGGCGTCGGGGGTGATCTCGCCGCACTTCCTCGACGCCGTCCTCCGCCCGCTGCGGCGCCGCCTCCGCGCGCACGCTCCCCGTCACTGCCGGCGCCGGGGCTGCTGCCCTCCTCCCTCGCGCTCCTCGCCAAGGTCTCCATC-GCCTGCTTCTCATGAGCCACTTGTGCCGCCGTCCTTGCCCGCTGCTCCTGCCGCCTCCTTGCCGGTGAGCGCAGGTGGATCCTCCGCTGCCACTGTAGAAGCAGAAGAAGCCGGCGGTCCCGGTGCCTCGGCTGCCGCAACGCCGGCGACAACCTGCTCTAGAACCTCTACCTCCTCTTCTTTGCCATCAACTTGAAGATGAAGTTGCTGCAGCGCGTGTTCTTGGAGATGGTCACCGTTGACTTCCGGCCGGACCTCACCACCTTCAGCGTCTGCGCCACAGCCTTCTCCATCAGGCATCAGTCGTCGTGATACCTCAGTATTAGGCCTGGTATCCACAAGTATCAGGCCTGGTACAAGATTACTTAGTGTCAAGCGCTCTTCGTCGATGTCGACGCTATCCTCCTCTCATCAGTGTTATGTGCAGGTACG----GACTGATACCTAGGTATCAAGCTTGGTACCAAGTACTAGGGGTATGGTACCTCAAGGGTATCATGCCTGGTACCTAAGTACCATCCAGTATCCATGGGTACCATGTGCATGGTATTAGGTACCAGATACCTATAATTATCAGGTACCACATGGTACCTGATACCTATTGTACCTGATACCTCGAGGGTATCATGCATGGTACCTAGGTACCATCCATGGGTATCTGTTAACAGTGAAATTTGGTAAGCCCAGAGTAGTC-ATCGGCTTAGAGTCAGCATCGGCTTCGAAGTCCTGAGATTAGCCGATGAGAGTTGTCAAGTCGTCAGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTACTAAAGGAAGCTTATCCAAAAGAGACCGAGTTCAAAGAGAATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAAGTTTCTTTCTTGTCCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACACCTGGGGTCTATGTAATCTATCTTCACGATCAATACAATTCGGCGCATCGCCACCCTTTTTACTTCTAAAAA]

[+] EMBL AK064111             [CGGGATAAACTGGATAAGATCTCTGCCTTATCTCCTTCCCTTCCCCTCCACAAACTCACTCACTCTCTCTCTCTGGATAAGGCCGAGAAGGCTGAGAAGAAGCCAGCCAGAAGGAAGGGATCGTCGTCGTCGTCTTCGGCGGCCGAGGAGGACGACGACGGCACGGCGTCGGTG AGGTCAGGGGGCGTCGGGGGTGATCTCGCCGCACTTCCTCGACGCCGTCCTCCGCCCGCTGCGGCGCCGCCTCCGCGCGCACGCTCCCCGTCACTGCCGGCGCCGGGGCTGCTGCCCTCCTCCCTCGCGCTCCTCGCCAAGGTCTCCATC GCCTGCTTCTCATGAGCCACTTGTGCCGCCGTCCTTGCCCGCTGCTCCTGCCGCCTCCTTGCCGGTGAGCGCAGGTGGATCCTCCGCTGCCACTGTAGAAGCAGAAGAAGCCGGCGGTCCCGGTGCCTCGGCTGCCGCAACGCCGGCGACAACCTGCTCTAGAACCTCTACCTCCTCTTCTTTGCCATCAACTTGAAGATGAAGTTGCTGCAGCGCGTGTTCTTGGAGATGGTCACCGTTGACTTCCGGCCGGACCTCACCACCTTCAGCGTCTGCGCCACAGCCTTCTCCATCAGGCATCAGTCGTCGTGATACCTCAGTATTAGGCCTGGTATCCACAAGTATCAGGCCTGGTACAAGATTACTTAGTGTCAAGCGCTCTTCGTCGATGTCGACGCTATCCTCCTCTCATCAGTGTTATGTGCAGGTACG    GACTGATACCTAGGTATCAAGCTTGGTACCAAGTACTAGGGGTATGGTACCTCAAGGGTATCATGCCTGGTACCTAAGTACCATCCAGTATCCATGGGTACCATGTGCATGGTATTAGGTACCAGATACCTATAATTATCAGGTACCACATGGTACCTGATACCTATTGTACCTGATACCTCGAGGGTATCATGCATGGTACCTAGGTACCATCCATGGGTATCTGTTAACAGTGAAATTTGGTAAGCCCAGAGTAGTC ATCGGCTTAGAGTCAGCATCGGCTTCGAAGTCCTGAGATTAGCCGATGAGAGTTGTCAAGTCGTCAGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTACTAAAGGAAGCTTATCCAAAAGAGACCGAGTTCAAAGAGAATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAAGTTTCTTTCTTGTCCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACACCTGGGGTCTATGTAATCTATCTTCACGATCAATACAATTCGGCGCATCGC                     ]
[+] EMBL C26651               [                                                                                 GCCGAGAAGGCTGAGAAGAAGCCAGCCAGAAGGAAGGGATCGTCGTCGTNGTCTTCGGCGGCCGAGGAGGACGACGACGNCACGGCGNGGTTGTAGGTCAGGGGGCGTCGGGGGTGATCTCGCCGNACTTCCTCGACGNCGTNCTCCGNNCGCTGCGGCGCCGCCTCCGCGCGCACGNTCCCCGTCACTGCCGGCGCCGGGGCTGCTTGCCTCCTCCCTCGCGCTCCTCGGCAAGGTCTCCATCNGCCTGNTTCTCATGAGCCACTTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB965213             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCACCTTTAGCTTCTTCGCCACATCCTTCTCCATCAGGCATCAGTCGTCTTGATACCTCAGTATTAGGCCTGGTATCCACAAGTATCAGGCCTGGTACAAGATTACTCAGTGTCAAGCGCTCTTCGTCGATGTCGACGCTATCCTCCTCTCATCAGTGTTATGTGCAGGTACGTTATGACTGATACCTAGGTATCAAGCTTGGTACCAAGTACTAGGGGTATGGTACCTCGAGGGTATCATGCCTGGTACCTAAGTA    CCAGTATCCATGGGTACCATGTGCATGGTATCAGGTACCAGATACCTATAATTATCAAGTACCACATGGTACCTGATACCTATTATACCTGATACCTCGAGGGTATCATGCATGGTACCTAGGTACCATCCATGGGTATCTGTTAACAGTGAAATTTGGTAAGCCCAGAGTAGTC ATTGGCTTAGAGTCAGCATCGGCTTCAAAGTCCTGAGATTAGCCGATGAGAGTTGTCAAGTCATCAGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTATTAAAGGAAG                                                                                                                                                                                                                                                                                  ]
[+] EMBL BQ906916             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCCAGAGTAGTCTATCGGCTTAGAGTCAGCATCGGTTTCGAAGTCCTGAGATTAGCCGATGAAAGTTATCAAGTCGTCAGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTACTAAAGGAAGCTTATCCAGAAGAGACCGAGTTCAAAGAGAATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAAGTTTCTTTCTTGTCCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACACCCGGGGTCTATGTAATCTATCTTCACGATCAATACAATTCGGCGCATCGCCACCCTTTTTACTTCTAAAAA]


>consensus_12606#0 CGGGATAAACTGGATAAGATCTCTGCCTTATCTCCTTCCCTTCCCCTCCACAAACTCACT CACTCTCTCTCTCTGGATAAGGCCGAGAAGGCTGAGAAGAAGCCAGCCAGAAGGAAGGGA TCGTCGTCGTCGTCTTCGGCGGCCGAGGAGGACGACGACGGCACGGCGTCGGTGAGGTCA GGGGGCGTCGGGGGTGATCTCGCCGCACTTCCTCGACGCCGTCCTCCGCCCGCTGCGGCG CCGCCTCCGCGCGCACGCTCCCCGTCACTGCCGGCGCCGGGGCTGCTGCCCTCCTCCCTC GCGCTCCTCGCCAAGGTCTCCATCGCCTGCTTCTCATGAGCCACTTGTGCCGCCGTCCTT GCCCGCTGCTCCTGCCGCCTCCTTGCCGGTGAGCGCAGGTGGATCCTCCGCTGCCACTGT AGAAGCAGAAGAAGCCGGCGGTCCCGGTGCCTCGGCTGCCGCAACGCCGGCGACAACCTG CTCTAGAACCTCTACCTCCTCTTCTTTGCCATCAACTTGAAGATGAAGTTGCTGCAGCGC GTGTTCTTGGAGATGGTCACCGTTGACTTCCGGCCGGACCTCACCACCTTCAGCGTCTGC GCCACAGCCTTCTCCATCAGGCATCAGTCGTCGTGATACCTCAGTATTAGGCCTGGTATC CACAAGTATCAGGCCTGGTACAAGATTACTTAGTGTCAAGCGCTCTTCGTCGATGTCGAC GCTATCCTCCTCTCATCAGTGTTATGTGCAGGTACGGACTGATACCTAGGTATCAAGCTT GGTACCAAGTACTAGGGGTATGGTACCTCAAGGGTATCATGCCTGGTACCTAAGTACCAT CCAGTATCCATGGGTACCATGTGCATGGTATTAGGTACCAGATACCTATAATTATCAGGT ACCACATGGTACCTGATACCTATTGTACCTGATACCTCGAGGGTATCATGCATGGTACCT AGGTACCATCCATGGGTATCTGTTAACAGTGAAATTTGGTAAGCCCAGAGTAGTCATCGG CTTAGAGTCAGCATCGGCTTCGAAGTCCTGAGATTAGCCGATGAGAGTTGTCAAGTCGTC AGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTACTAAAGGAAGCTTATCC AAAAGAGACCGAGTTCAAAGAGAATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGT TTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTT TTCCTTTTATCTTTAGGAAAGTTTCTTTCTTGTCCGACAAGGACTTGTATCAACCCATGG GTATAAATATGTACACCTGGGGTCTATGTAATCTATCTTCACGATCAATACAATTCGGCG CATCGCCACCCTTTTTACTTCTAAAAA



consensusID : consensus_12606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1137
fasta sequence
                              [CACCCGTCCATCCCAATCTCGCTTCCACCGACCAAGCGAGTCGCCACCGGCTCGTTCCTCAGCCTCCGCTTCCGTCTTCTCTACTCCTCCTCCCATCCTCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGGCGTCGTCGTTGGTCTCCGTGGCGGCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCGAAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACCTGCACCAACACCGGCTGCCGCCCCTGCGTCGTCTCCTGCCCTTCCAACTGCCCCAACATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCGCCTCGCGCTAGCCGCCCACGGTGCCTGTTGTCTGCACCGATGCCGGGAACACCGCAACGACGACGGTGAAGACGAGGAGAACACAGGCGACGGTGGCCATGGCAACTATGGATCTAGCACGGGGTGGCCAGCAAGGCGGAAGTTGGCGATGGGTGAACGGCAGCAAGCAAGATAAAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGATCTTGGATGGATTGGAGTTCCCCGTTGATCCCTCTGGTGATTTTATTTTGGTGGATTAGAGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTAGAGTGTAATTCTATCTACTTTATCTTTGCGAGTTTGGAAATTTGGAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAACCCGAAGTCATCATCATCGACCTTCAGAGGCTTGGAATCGACCGATGGGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGATGAGTCCGAATTCAAAAGACGATGCAGCTTTGTCTGTTTTCTTTTATCTTTAGGAATGTATGTTTAGTATCCGATAAGCATTTTATGTTTTTCTTTTATCCTTAGTAAAGTCTTTTTCTTGTTCTACAAGGACTAGTATCTCCCCATTAGTATAAATATATACACCCGGGGTCATTATAAAATA]

[+] EMBL AK061137             [CACCCGTCCATCCCAATCTCGCTTCCACCGACCAAGCGAGTCGCCACCGGCTCGTTCCTCAGCCTCCGCTTCCGTCTTCTCTACTCCTCCTCCCATCCTCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGGCGTCGTCGTTGGTCTCCGTGGCGGCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCGAAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACCTGCACCAACACCGGCTGCCGCCCCTGCGTTGTCTCCTGCCCTTCCAACTGCCCCAACATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCGCCTCGCGCTAGCCGCCCACGGTGCCTGTTGTCTGCACCGATGCCGGGAACACCGCAACGACGACGGTGAAGACGAGGAGAACACAGGCGACGGTGGCCATGGCAACTATGGATCTAGCACGGGGTGGCCAGCAAGGCGGAAGTTGGCGATGGGTGAACGGCAGCAAGCAAGATAAAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGATCTTGGATGGATTGGAGTTCCCCGTTGATCCCTCTGGTGATTTTATTTTGGTGGATTAGAGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTAGAGTGTAATTCTATCTACTTTATCTTTGCGAGTTTGGAAATTTGGAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAACCCGAAGTCATCATCATCGACCTTCAGAGGCTTGGAATCGACCGATGGGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGATGAGTCCGAATTCAAAAGACGATGCAGCTTTGTCTGTTTTCTTTTATCTTTAGGAATGTATGTTTAGTATCCGATAAGCATTTTATGTTTTTCTTTTATCCTTAGTAAAGTCTTTTTCTTGTTCTACAAGGACTAGTATCTCCCCATTAGTATAAATATATACACCCGGGGTCATTATAAAATA]
[+] EMBL CF319401             [                                               CGGCTCGTTCCTCAGCCTCCGCTTCCGTCTTCTCTACTCCTCCTCCCATCCTCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGGCGTCGTCGTTGGTCTCCGTGGCGGCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCGAAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACCTGCACCAACACCGGCTGCCGCCCCTGCGTCGTCTCCTGCCCTTCCAACTGCCCCAACATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCGCCTCGCGCTAGCCGCCCACGGTGCCTGTTGTCTGCACCGATGCCGGGAACACCGCAACGACGACGGTGAAGACGAGGAGAACACAGGCGACGGTGGCCATGGCAACTATGGATCTAtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BF430542             [                                                                                               TCCTCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGCCGTCGTCGTTGGCCTCCGTGGCGGCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCGAAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACCTGCACCAACACCGGCTGCCGCCCCTGCGTCGTCTCCTGCCCTTCCAACTGCCCCAACATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCGCCTCGCGCTAGCCGCCCACGGTGCCTGTTGTCTGCACCGATGCCGGGAACACCGTAACGACGACGGTGAAGACGAGGAGAACACAGGCGACGGTGGCCATGGCAACTATGGATCTAGCACGGGGTGGCCAGCAAGGCAGAAGTTGGCGATGGGTGAACGGCAGCAAGCAAGATAAAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGATCTTGGATGGATTGGAGTTCCCCG TGATCCCTCTGGTGATTTTATTTTGGTGGATTAGAGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTAGAGTGTAATTCTATCTACTTTATCTTT                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF319402             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAACTATGGATCTAGCACGGGGTGGCCAGCAAGGCGGAAGTTGGCGATGGGTGAACGGCAGCAAGCAAGATAAAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGATCTTGGATGGATTGGAGTTCCCCGTTGATCCCTCTGGTGATTTTATTTTGGTGGATTAGAGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTAGAGTGTAATTCTATCTACTTTATCTTTGCGAGTTTGGAAATTTGGAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAACCCGAAGTCATCATCATCGACCTTCAGAGGCTTGGAATCGACCGATGGGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGATGAGTCCGAATTCAAAAGACGATGCAGCCTTGTCTGTTTTCTTTTATCTTTAGGAATGTATGTTTAGTATCCGATAAGCATTTTATGTTTTTCTTTTATCCTTAGTAAAGTCTTTTTCTTGTTCTAAAAaaa                                                    ]


>consensus_12606#1 CACCCGTCCATCCCAATCTCGCTTCCACCGACCAAGCGAGTCGCCACCGGCTCGTTCCTC AGCCTCCGCTTCCGTCTTCTCTACTCCTCCTCCCATCCTCCATCCTGAGCGTGTCCTCTC CATCAAGCTCTACGGCGTCGTCGTTGGTCTCCGTGGCGGCGTCGAGCCCGCTGGTGTCGC CGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCGAAGACGAAGCTGACCACCATCA CCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACCTGCACCAACACCGGCTGCCGCC CCTGCGTCGTCTCCTGCCCTTCCAACTGCCCCAACATGTGCCTCGTCGCTTGCGCCTACT GCCTCACCTTCTGCCCGCCTCGCGCTAGCCGCCCACGGTGCCTGTTGTCTGCACCGATGC CGGGAACACCGCAACGACGACGGTGAAGACGAGGAGAACACAGGCGACGGTGGCCATGGC AACTATGGATCTAGCACGGGGTGGCCAGCAAGGCGGAAGTTGGCGATGGGTGAACGGCAG CAAGCAAGATAAAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTA GGTAAATCGATCTTGGATGGATTGGAGTTCCCCGTTGATCCCTCTGGTGATTTTATTTTG GTGGATTAGAGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGA TAGATTAGAGTGTAATTCTATCTACTTTATCTTTGCGAGTTTGGAAATTTGGAATCTATT TTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAACC CGAAGTCATCATCATCGACCTTCAGAGGCTTGGAATCGACCGATGGGAGTTATAAAATCG CCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGATGAGTCC GAATTCAAAAGACGATGCAGCTTTGTCTGTTTTCTTTTATCTTTAGGAATGTATGTTTAG TATCCGATAAGCATTTTATGTTTTTCTTTTATCCTTAGTAAAGTCTTTTTCTTGTTCTAC AAGGACTAGTATCTCCCCATTAGTATAAATATATACACCCGGGGTCATTATAAAATA



consensusID : consensus_12606#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence
                              [GAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAGCCCGAAGTCATCATCGACCTAGAGTCAGTATCGGCTTCAGAGTCTTGGAATCGATCGATGAGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGAAGAGTCCGAATTCAAAGACGATGCAGCATGACAAGTGTTTCTATTAATTAGGAATAGTTTGTCTGTTTTCTTTTATCTTTAGGAAGGTGTGTTTAGTATCCGATAAGCACTTTATGTTTTCCTTTTATCCTTAGTAAAGTCTCTTTCTTGTCCTATAAGGACTAGTGTCTCCCCATGAGTATAAATATGTACACCCGGGGTCATTATAAAATATCTTTTGATCAATACAACTACTCTGGGCGCATCGCCACCCTCTTTTCTGAGGTTTTTACTAATCATCCCGTGGAATTTGGCACCTGACGTGGGGTTGCATCGGTTCAGTTTGATCTCCGGCGAATGGGTAAGTCCTACGTTCCGCCGGGGTTGGTGAATCTATCGTCTACATCGGCGTCGTTCAAGGCTGCATCGCTCCGATCTCTTGGATCGCTCTGGTTTGGTTAATATATTTGCCTACCTGATATCTCAATTCTATCTCTAATTGCATTGTGTTTAGAGACGCATCGGTTTAGTTGGAACTGTCTCGGTTAGGTCTGATCTTCTATCTTAGCCGATATATCTCTACAATCATAATGTTGTTCTGAATAGATTTGTTATA]

[+] EMBL CB620324             [GAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAGCCCGAAGTCATCATCGACCTAGAGTCAGTATCGGCTTCAGAGTCTTGGAATCGATCGATGAGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGAAGAGTCCGAATTCAAAGACGATGCAGCATGACAAGTGTTTCTATTAATTAGGAATAGTTTGTCTGTTTTCTTTTATCTTTAGGAAGGTGTGTTTAGTATCCGATAAGCACTTTATGTTTTCCTTTTATCCTTAGTAAAGTCTCTTTCTTGTCCTATAAGGACTAGTGTCTCCCCATGAGTATAAATATGTACACCCGGGGTCATTATAAAATATCTTTTGATCAATACAACTACTCTGGGCGCATCGCCACCCTCTTTTCTGAGGTTTTTACTAATCATCCCGTGGAATTTGGCACCTGACGTGGGGTTGCATCGGTTCAGTTTGATCTCCGGCGAATGGGTAAGTCCTACGTTCCGCCGGGGTTGGTGAATCTATCGTCTACATCGGCGTCGTTCAAGGCTGCATCGCTCCGATCTCTTGGATCGCTCTGGTTTGGTTAATATATTTGCCTACCTGATATCTCAATTCTATCTCTAATTGCATTGTGTTTAGAGACGCATCGGTTTAGTTGGAACTGTCTCGGTTAGGTCTGATCTTCTATCTTAGCCGATATATCTCTACAATCATAATGTTGTTCTGAATAGATTTGTTATA]


>consensus_12606#2 GAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATT TGGTAAGCCCGAAGTCATCATCGACCTAGAGTCAGTATCGGCTTCAGAGTCTTGGAATCG ATCGATGAGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAA GGAAATTTATTTAGAAGAGTCCGAATTCAAAGACGATGCAGCATGACAAGTGTTTCTATT AATTAGGAATAGTTTGTCTGTTTTCTTTTATCTTTAGGAAGGTGTGTTTAGTATCCGATA AGCACTTTATGTTTTCCTTTTATCCTTAGTAAAGTCTCTTTCTTGTCCTATAAGGACTAG TGTCTCCCCATGAGTATAAATATGTACACCCGGGGTCATTATAAAATATCTTTTGATCAA TACAACTACTCTGGGCGCATCGCCACCCTCTTTTCTGAGGTTTTTACTAATCATCCCGTG GAATTTGGCACCTGACGTGGGGTTGCATCGGTTCAGTTTGATCTCCGGCGAATGGGTAAG TCCTACGTTCCGCCGGGGTTGGTGAATCTATCGTCTACATCGGCGTCGTTCAAGGCTGCA TCGCTCCGATCTCTTGGATCGCTCTGGTTTGGTTAATATATTTGCCTACCTGATATCTCA ATTCTATCTCTAATTGCATTGTGTTTAGAGACGCATCGGTTTAGTTGGAACTGTCTCGGT TAGGTCTGATCTTCTATCTTAGCCGATATATCTCTACAATCATAATGTTGTTCTGAATAG ATTTGTTATA



consensusID : consensus_12606#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 557
fasta sequence
                              [ATGCTATTGCTGCAAGAATTTGATAATGAGAATTTCACTGGAAATGACATCTGGTTTGAGTTCACTGAAGATGAAGAAAAAACAATTGAAAATCATGCAGCCATAAGCCCCCATCTCCTCTGCCGCAAGTCATCATCGGCCTAAAGTCAGTATCGGCTTCAGAGTCTTGGAATTGGAATCGACCGATGGGAGTTATCAAATCGCCAGCAGTTGTGTTCATGGTGGAGTCAGATCAATTAAAGGAAATTTATCCAAAAGATTGAGTTCAAGGAGAAGAGTTCGAGTTCAAGGAGTATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTCTTTTTATCTTTAGGAAAGTGTTTAGTGTCTGATAAGAACTTAATGTTTTCTTTTTATCTTTAGGAAAGTTTCTCTTGTCCTTGTCCTACAAGGACAAGTATCTCCCCATGGGTATAAATATGTACACCCGGAGTCATTGTAAGGAATATTTCTCGATCAATACAACTACTCGGCGCATCGCCATCCTCTTTAAAAAAAAAAAAAAAAAAAAAAAAC]

[-] EMBL CF325980             [ATGCTATTGCTGCAAGAATTTGATAATGAGAATTTCACTGGAAATGACATCTGGTTTGAGTTCACTGAAGATGAAGAAAAAACAATTGAAAATCATGCAGCCATAAGCCCCCATCTCCTCTGCCGCAAGTCATCATCGGCCTAAAGTCAGTATCGGCTTCAGAGTCTTGGAATTGGAATCGACCGATGGGAGTTATCAAATCGCCAGCAGTTGTGTTCATGGTGGAGTCAGATCAATTAAAGGAAATTTATCCAAAAGATTGAGTTCAAGGAGAAGAGTTCGAGTTCAAGGAGTATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTCTTTTTATCTTTAGGAAAGTGTTTAGTGTCTGATAAGAACTTAATGTTTTCTTTTTATCTTTAGGAAAGTTTCTCTTGTCCTTGTCCTACAAGGACAAGTATCTCCCCATGGGTATAAATATGTACACCCGGAGTCATTGTAAGGAATATTTCTCGATCAATACAACTACTCGGCGCATCGCCATCCTCTTTAAAAAAAAAAAAAAAAAAAAAAAAC]
[-] EMBL CF324647             [                                                                                                                                                                                                          GCCAGCAGTTGTGTTCATGGTGGAGTCAGATCAATTAAAGGAAATTTATCCAAAAGATTGAGTTCAAGGAGAAGAGTTCGAGTTCAAGGAGTATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTCTTTTTATCTTTAGGAAAGTGTTTAGTGTCTGATAAGAACTTAATGTTTTCTTTTTATCTTTAGGAAAGTTTCTCTTGTCCTTGTCCTACAAGGACAAGTATCTCCCCATGGGTATAAATATGTACACCCGGAGTCATTGTAAGGAATATTTCTCGATCAATACAACTACTCGGCGCATCGCCATCCTCTTTAAAAAAAAAAAAAAAAAAAAAAAc ]


>consensus_12606#3 ATGCTATTGCTGCAAGAATTTGATAATGAGAATTTCACTGGAAATGACATCTGGTTTGAG TTCACTGAAGATGAAGAAAAAACAATTGAAAATCATGCAGCCATAAGCCCCCATCTCCTC TGCCGCAAGTCATCATCGGCCTAAAGTCAGTATCGGCTTCAGAGTCTTGGAATTGGAATC GACCGATGGGAGTTATCAAATCGCCAGCAGTTGTGTTCATGGTGGAGTCAGATCAATTAA AGGAAATTTATCCAAAAGATTGAGTTCAAGGAGAAGAGTTCGAGTTCAAGGAGTATGCGG CATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTCTTTTTATCTTTAGGAAAGT GTTTAGTGTCTGATAAGAACTTAATGTTTTCTTTTTATCTTTAGGAAAGTTTCTCTTGTC CTTGTCCTACAAGGACAAGTATCTCCCCATGGGTATAAATATGTACACCCGGAGTCATTG TAAGGAATATTTCTCGATCAATACAACTACTCGGCGCATCGCCATCCTCTTTAAAAAAAA AAAAAAAAAAAAAAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12606#0      CGGGATAAACTGGATAAGATCTCTGCCTTATCTCCTTCCCTTCCCCTCCACAAACTCACT 60
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      ------------------------------------------------------------
                                                                                   

consensus_12606#0      CACTCTCTCTCTCTGGATAAGGCCGAGAAGGCTGAGAAGAAGCCAGCCAGAAGGAAGGGA 120
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      ------------------------------------------------------------
                                                                                   

consensus_12606#0      TCGTCGTCGTCGTCTTCGGCGGCCGAGGAGGACGACGACGGCACGGCGTCGGTGAGGTCA 180
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      ----------------------CACCCGTCCATCCCAATCTCGCTTCCACCGACCAAGCG 38
                                                                                   

consensus_12606#0      GGGGGCGTCGGGGGTGATCTCGCCGCACTTCCTCGACGCCGTCCTCCGCCCGCTGCGGCG 240
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      AGTCGCCACCGGCTCGTTCCTCAGCCTCCGCTTCCGTCTTCTCTACTCCTCCTCCCATCC 98
                                                                                   

consensus_12606#0      CCGCCTCCGCGCGCACGCTCCCCGTCACTGCCGGCGCCGGGGCTGCTGCCCTCCTCCCTC 300
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      TCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGGCGTCGTCGTTGGTCTCCGTGGCG 158
                                                                                   

consensus_12606#0      GCGCTC--CTCGCCAAGGTCTCCATCGCCTGCTTCTCATGAGCCACTTGTGCCGCCGTCC 358
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      GCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCG 218
                                                                                   

consensus_12606#0      TTGCCCGCTGCTCCTGCCGCCTCCTT-GCCGGTGAGCGCAGGTGGATCCTCCGCTGCCAC 417
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      AAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACC 278
                                                                                   

consensus_12606#0      TGTAGAAGCAGAAGAAGCCGGCGGTCCCGGTGCCTCGGCTGCCGCAACGCCGGCGACAAC 477
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      TGCACCAACACCGGCTGCCGCC---CCTGCGTCGTCTCCTGCCCTTCCAACTGCCCCAAC 335
                                                                                   

consensus_12606#0      CTGCTCTAGAACCTCTACCTCCTCTTCTTTGCCATCAACTTGAAGATGAAGTTGCTGCAG 537
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      ATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCG----CCTCGCGCTAGCCG 391
                                                                                   

consensus_12606#0      CGCGTGTTCTTGGAGATGGTCACCGTTGACTTCCGGCCGGACCTCACCACCTTCAGCGTC 597
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      CCCACGGTGCCTGTTGTCTGCACCGATG----CCGGGAACACCGCAACGACGACGGTGAA 447
                                                                                   

consensus_12606#0      TGCGCCACAGCCTTCTCCATCAGGCATCAGTCGTCGTGATACCTCAGTATTAGGCCTGGT 657
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      GACGAGGAGAAC-------ACAGGCGACGGTGGCCATGGCAACTATGGATCTAGCACGG- 499
                                                                                   

consensus_12606#0      ATCCACAAGTATCAGGCCTGGTACAAGATTACTTAGTGTCAAGCGCTCTTCGTCGATGTC 717
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      -------GGTGGCCAGCAAGGCGGAAGTTGGCGATGGGTGAACGGCAGCAAG-CAAGATA 551
                                                                                   

consensus_12606#0      GACGCTATCCTCCTCTCATCAGTGTTATGTGCAGGTACGGACTGATACCTAGGTATCAAG 777
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      AAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGAT 611
                                                                                   

consensus_12606#0      CTTGG-TACCAAGTACTAGGGGTATGGTACCTCAAGGGTATCATGCCTGGTACCTAAGTA 836
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      CTTGGATGGATTGGAGTTCCCCGTTGATCCCTCTGGTGATTTTATTTTGGTGGATTAG-- 669
                                                                                   

consensus_12606#0      CCATCCAGTATCCATGGGTACCATGTGCATGGTATTAGGT-ACCAGATACCTATA-ATTA 894
consensus_12606#3      ----------------------------ATGCTATT-GCT-GCAAGAATTTGATA-ATGA 29
consensus_12606#2      ------------------------------------------------------------
consensus_12606#1      --AGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTA 727
                                                                                   

consensus_12606#0      TCAGGTACCACATGGTACCTGATACCTATTGTACCTGATACCTCGAGGGTATCATGCATG 954
consensus_12606#3      ----GAATTTCACTGGAAATGACATCTGGTTTG---AGTTCACTGAAGATGA-AGAAAAA 81
consensus_12606#2      --------------------------------------------GAATCTATTTTATCTG 16
consensus_12606#1      GAGTGTAATTCTATCTACTTTATCTTTGCGAGTTTGGAAATTTGGAATCTATTTTATCTG 787
                                                                   **   *          

consensus_12606#0      GTACCTAGGTACCATCCATGG--GTATCTGTTAACAGTGAAA-TTTGGTAAGCCCAGAGT 1011
consensus_12606#3      ACAATTGAAAATCAT--------GCAGCCATAAGC--CCCCA-TCTCCTCTGCCGCAAGT 130
consensus_12606#2      GAATCTGGA-ACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAGCCCGAAGT 75
consensus_12606#1      GAATCTGGA-ACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAACCCGAAGT 846
                         *  *    * ***        *      * * *      * * *  *   **   ***

consensus_12606#0      AGTCATCGGCTTAGAGTCAGCATCGGCTTCGAAGTCCTGAGATTAG------CCGATGAG 1065
consensus_12606#3      CATCATCGGCCTAAAGTCAGTATCGGCTTCAGAGTCTTGGAATTGGAATCGACCGATGGG 190
consensus_12606#2      CATCATCGACCTAGAGTCAGTATCGGCTTCAGAGTCTTGGAATCGA------TCGATGAG 129
consensus_12606#1      CATCATCA--------TCGAC-----CTTCAGAGGCTTGGAATCGA------CCGATGGG 887
                         *****         **        ****  ** * **  **          ***** *

consensus_12606#0      AGTTGTCAAGTCGTCAGTTGTCGGATTCTTGCTATATTCGGTT------AAGGAAATTGA 1119
consensus_12606#3      AGTTATCAAATCGCCAGCAGTTGTGTTCATGGTGGAGTCAGATCAATTAAAGGAAATTTA 250
consensus_12606#2      AGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGG------------------A 171
consensus_12606#1      AGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGG------------------A 929
                       **** * ** *** ***  ** *  *** ** *  * *  *                  *

consensus_12606#0      TCTACTAAAGGAAGCTTATCCAAAAGAGACCGAGTTCAAA-GAGAATGCGGCATGGCAAG 1178
consensus_12606#3      TCCAAAAGATTGAGTTCAAGGAGAAGAGTTCGAGTTCAAG-GAGTATGCGGCATGGCAAG 309
consensus_12606#2      TCAATTAAAGGAAATTTATTTAGAAGAGTCCGAATTCAAA-GACGATGCAGCATGACAAG 230
consensus_12606#1      TCAATTAAAGGAAATTTATTTAGATGAGTCCGAATTCAAAAGACGATGCAGC-------- 981
                       ** *  * *   *  * *   * * ***  *** *****  **  **** **        

consensus_12606#0      T-TATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTA 1237
consensus_12606#3      T-TATCTATTAATTAGGAATAGTTTGTTAGTT-CTTTTTATCTTTAGGAAAGTG--TTTA 365
consensus_12606#2      TGTTTCTATTAATTAGGAATAGTTTGTCTGTTTTCTTTTATCTTTAGGAAGGTGTGTTTA 290
consensus_12606#1      ----------------------TTTGTCTGTTTTCTTTTATCTTTAGGAATGTATGTTTA 1019
                                             *****  ***   *************** **   ****

consensus_12606#0      GTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAAGTTTCTTT----CTTGT 1293
consensus_12606#3      GTGTCTGATAAGAACTTAATGTTTTCTTTTTATCTTTAGGAAAGTTTCTCTTGTCCTTGT 425
consensus_12606#2      GTATCCGATAAGCACTTTATGTTTTCCTTTTATCCTTAGTAAAGTCTCTTT----CTTGT 346
consensus_12606#1      GTATCCGATAAGCATTTTATGTTTTTCTTTTATCCTTAGTAAAGTCTTTTT----CTTGT 1075
                       ** **  ***** * ** ** ****  ******* **** ***** * * *    *****

consensus_12606#0      CCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACACCTGGGGTCTATGTAATC 1353
consensus_12606#3      CCTACAAGGACAAGTATCTCCCCATGGGTATAAATATGTACACCCGGAGTCATTGTAAGG 485
consensus_12606#2      CCTATAAGGACTAGTGTCTCCCCATGAGTATAAATATGTACACCCGGGGTCATTATAAAA 406
consensus_12606#1      TCTACAAGGACTAGTATCTCCCCATTAGTATAAATATATACACCCGGGGTCATTATAAAA 1135
                        * * ******  ** **  *****  ********** ****** ** ***  * ***  

consensus_12606#0      TAT-CTTCACGATCAATACAATT---C--GGCGCATCGCCACCCTTTTT------ACTTC 1401
consensus_12606#3      AATATTTCTCGATCAATACAACTACTC--GGCGCATCGCCATCCTCTTT------AAAAA 537
consensus_12606#2      TAT--CTTTTGATCAATACAACTACTCTGGGCGCATCGCCACCCTCTTTTCTGAGGTTTT 464
consensus_12606#1      TA---------------------------------------------------------- 1137
                        *                                                          

consensus_12606#0      TAAAAA------------------------------------------------------ 1407
consensus_12606#3      AAAAAAAAAAAAAAAAAAAC---------------------------------------- 557
consensus_12606#2      TACTAATCATCCCGTGGAATTTGGCACCTGACGTGGGGTTGCATCGGTTCAGTTTGATCT 524
consensus_12606#1      ------------------------------------------------------------
                                                                                   

consensus_12606#0      ------------------------------------------------------------
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      CCGGCGAATGGGTAAGTCCTACGTTCCGCCGGGGTTGGTGAATCTATCGTCTACATCGGC 584
consensus_12606#1      ------------------------------------------------------------
                                                                                   

consensus_12606#0      ------------------------------------------------------------
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      GTCGTTCAAGGCTGCATCGCTCCGATCTCTTGGATCGCTCTGGTTTGGTTAATATATTTG 644
consensus_12606#1      ------------------------------------------------------------
                                                                                   

consensus_12606#0      ------------------------------------------------------------
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      CCTACCTGATATCTCAATTCTATCTCTAATTGCATTGTGTTTAGAGACGCATCGGTTTAG 704
consensus_12606#1      ------------------------------------------------------------
                                                                                   

consensus_12606#0      ------------------------------------------------------------
consensus_12606#3      ------------------------------------------------------------
consensus_12606#2      TTGGAACTGTCTCGGTTAGGTCTGATCTTCTATCTTAGCCGATATATCTCTACAATCATA 764
consensus_12606#1      ------------------------------------------------------------
                                                                                   

consensus_12606#0      --------------------------
consensus_12606#3      --------------------------
consensus_12606#2      ATGTTGTTCTGAATAGATTTGTTATA 790
consensus_12606#1      --------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)