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Oryza sativa
cluster # 12611 cluster # 12611       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12611#0 length = 1243 sequences # 2  
consensus_12611#1 length = 719 sequences # 7  
consensus_12611#2 length = 677 sequences # 1  
consensus_12611#3 length = 323 sequences # 1  

consensusID : consensus_12611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1243
fasta sequence
                              [GCCTCCGCCTCCGGCTCCGGCGATCCCCATCCATCCCGCGAGCGAGCAGGGCGCCGTCGTTCTTCCTGCCGCATCCATCCTGGTGAGCACATCCTCCGCCACCGCCGCCTGCCCCGATCCCCATCCATCGCGGCGCGCGCGAGCTCGTCCTGCTGCTTCCGCCGCATCGGCTCATTGACACTCAAGTCAAAAAAGAAAAGGAGAGAAAGGGGGATATGGAGGAGTGGTCACCACCGTCATCTCCGTCGCTGGTGGTGCGGAGCCCCAGGCAGACGGTCAGCCTTCTCCGGAACCGTCACCCATGGCGGGAGTCTCGGTCGCCCCCCACATCCACATCCACCTCGTTGGCCGGTGGCCCCAAGCTGTCGGAAGTTTATGGCTTTGTGGGATCCATCACCACCGTCATCGCCACCACTGTCTACCTTGTCTGGGCTTACATGCCTGAGCGTTGCCTCCGCTCTCTTGGCATCACCTACTACCCGAGCAGGTATTGGGCCCTTGCAGTGCCATCGTTTGTGATAGTAGCGACGGCACTTTGCATGGTCGTTTATGTGGGCTTCAACTTCCTGGCCACTCCTCCCCCCACTTCCTTTAACACCATTTTTGACGAGTACAGTCGAGAGCGGACCATGTTTGACCCTGCAAATGCAAATGCAACGGGAGAAGAGGAGGAGGCGTGACTTCTGTGGGAGTTGAGAGGAGGAAGAGACCATGGAGAAGTCGCCCCTGGGGTGGTTCAGGTTGCTGGTCAACAATGAAGACGTTGTTGCCATAAAGCAGATGCAGCTTTTCATTTTGGGAGGATTGCAAGATAGTAATGCAGTTTTCCCCCATTTTAATGAATACTTTGAACAATGCTTTGGGGAGGTGTTTAATGACTTTGCTGGTAAAACTTGTTTTTTCAAGTCCATGAAGGGTGATTTTGCCCATATTTTCCTGAAGTTGAGAGGCATGAAATCGAGGTTAGGGGCAACATATCCAGATGCTTTTCCTTCTGGCGCAATGGCAGAGACGATGGACCAAAGCCCGGCCCTTGAAAGTCCTTTTGATTAAAACAGTTTATCGTCCCCTTTTGGTAATGAGATTTACGGTTGAGTTTTTGTGTTCCGCCATTTTGGGAACTCAAGAAGAATGTTGTTCTTTTTGCCCTTTTGCTGAAAATGTATTTTTGAGAAACGGCTGCTTCTGTTTATAAAGTTGTACCCTTGTACTCCTATGTTTTTTGTGATATAAATGGAAAGGG]

[+] EMBL CB684008             [GCCTCCGCCTCCGGCTCCGGCGATCCCCATCCATCCCGCGAGCGAGCAGGGCGCCGTCGTTCTTCCTGCCGCATCCATCCTGGTGAGCACATCCTCCGCCACCGCCGCCTGCCCCGATCCCCATCCATCGCGGCGCGCGCGAGCTCGTCCTGCTGCTTCCGCCGCATCGGCTCATTGACACTCAAGTCAAAAAAGAAAAGGAGAGAAAGGGGGATATGGAGGAGTGGTCACCACCGTCATCTCCGTCGCTGGTGGTGCGGAGCCCCAGGCAGACGGTCAGCCTTCTCCGGAACCGTCACCCATGGCGGGAGTCTCGGTCGCCCCCCACATCCACATCCACCTCGTTGGCCGGTGGCCCCAAGCTGTCGGAAGTTTATGGCTTTGTGGGATCCATCACCACCGTCATCGCCACCACTGTCTACCTTGTCTGGGCTTACATGCCTGAGCGTTGCCTCCGCTCTCTTGGCATCACCTACTACCCGAGCAGGTATTGGGCCCTTGCAGTGCCATCGTTTGTGATAGTAGCGACGGCACTTTGCATGGTCGTTTATGTGGGCTTCAACTTCCTGGCCACTCCTCCCCCCACTTCCTTTAACACCATTTTTGACGAGTACAGTCGAGAGCGGACCATGTTTGACCCTGCAAATGCAAATGCAACGGGAGAAGAGGAGGAGGCGTGACTTCTGTGGGAGTTGAGAGGAGGAAGAGACCATGGAGAAGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB684009             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AATGCAACGGGAGAAGAGGAGGAGGCGTGACTTCTGTGGGAGTTGAGAGGAGGAAGAGCCCATGGAGAAGTCGCCCCTGGGGTGGTTCAGGTTGCTGGTCAACAATGAAGACGTTGTTGCCATAAAGCAGATGCAGCTTTTCATTTTGGGAGGATTGCAAGATAGTAATGCAGTTTTCCCCCATTTTAATGAATACTTTGAACAATGCTTTGGGGAGGTGTTTAATGACTTTGCTGGTAAAACTTGTTTTTTCAAGTCCATGAAGGGTGATTTTGCCCATATTTTCCTGAAGTTGAGAGGCATGAAATCGAGGTTAGGGGCAACATATCCAGATGCTTTTCCTTCTGGCGCAATGGCAGAGACGATGGACCAAAGCCCGGCCCTTGAAAGTCCTTTTGATTAAAACAGTTTATCGTCCCCTTTTGGTAATGAGATTTACGGTTGAGTTTTTGTGTTCCGCCATTTTGGGAACTCAAGAAGAATGTTGTTCTTTTTGCCCTTTTGCTGAAAATGTATTTTTGAGAAACGGCTGCTTCTGTTTATAAAGTTGTACCCTTGTACTCCTATGTTTTTTGTGATATAAATGGAAAGGG]


>consensus_12611#0 GCCTCCGCCTCCGGCTCCGGCGATCCCCATCCATCCCGCGAGCGAGCAGGGCGCCGTCGT TCTTCCTGCCGCATCCATCCTGGTGAGCACATCCTCCGCCACCGCCGCCTGCCCCGATCC CCATCCATCGCGGCGCGCGCGAGCTCGTCCTGCTGCTTCCGCCGCATCGGCTCATTGACA CTCAAGTCAAAAAAGAAAAGGAGAGAAAGGGGGATATGGAGGAGTGGTCACCACCGTCAT CTCCGTCGCTGGTGGTGCGGAGCCCCAGGCAGACGGTCAGCCTTCTCCGGAACCGTCACC CATGGCGGGAGTCTCGGTCGCCCCCCACATCCACATCCACCTCGTTGGCCGGTGGCCCCA AGCTGTCGGAAGTTTATGGCTTTGTGGGATCCATCACCACCGTCATCGCCACCACTGTCT ACCTTGTCTGGGCTTACATGCCTGAGCGTTGCCTCCGCTCTCTTGGCATCACCTACTACC CGAGCAGGTATTGGGCCCTTGCAGTGCCATCGTTTGTGATAGTAGCGACGGCACTTTGCA TGGTCGTTTATGTGGGCTTCAACTTCCTGGCCACTCCTCCCCCCACTTCCTTTAACACCA TTTTTGACGAGTACAGTCGAGAGCGGACCATGTTTGACCCTGCAAATGCAAATGCAACGG GAGAAGAGGAGGAGGCGTGACTTCTGTGGGAGTTGAGAGGAGGAAGAGACCATGGAGAAG TCGCCCCTGGGGTGGTTCAGGTTGCTGGTCAACAATGAAGACGTTGTTGCCATAAAGCAG ATGCAGCTTTTCATTTTGGGAGGATTGCAAGATAGTAATGCAGTTTTCCCCCATTTTAAT GAATACTTTGAACAATGCTTTGGGGAGGTGTTTAATGACTTTGCTGGTAAAACTTGTTTT TTCAAGTCCATGAAGGGTGATTTTGCCCATATTTTCCTGAAGTTGAGAGGCATGAAATCG AGGTTAGGGGCAACATATCCAGATGCTTTTCCTTCTGGCGCAATGGCAGAGACGATGGAC CAAAGCCCGGCCCTTGAAAGTCCTTTTGATTAAAACAGTTTATCGTCCCCTTTTGGTAAT GAGATTTACGGTTGAGTTTTTGTGTTCCGCCATTTTGGGAACTCAAGAAGAATGTTGTTC TTTTTGCCCTTTTGCTGAAAATGTATTTTTGAGAAACGGCTGCTTCTGTTTATAAAGTTG TACCCTTGTACTCCTATGTTTTTTGTGATATAAATGGAAAGGG



consensusID : consensus_12611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 719
fasta sequence
                              [GATAGGGGAGAGGAGGGCTCAGGCGGCCATGGAGAAGTCGCCGCCGGAGACAGCCGCGGCGGCCGCGGAGGTGGCGGCGCGGTTCAGGTCGCTGGTCGACACCGGGGACATCGGCGCCATCAGGCAGACGCAGCACCTCATACTG-GGACGGTTGCAAGATAGCAATGCAGTTCTCACACATTTTAACGAGTACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTAGTAAAACTCGTCTTCTCAAATCCATGAAGGACGATCTTGACCATATTTTCTTGAAGCTGAGAAGCATGAAATCGAGGCTAGCGGCAACATATCCAGATGCTTTTCCCGATGGTGCAATGGCAAAAACGATGGACCAAAGACCGGACCTTGAAAGTCCGCTTGATTAAAACAGCTTATCATTTTGACTGAGATCTCCGGTTGAGTCCTTCTGTACTCATCTTGAAGAAGAATGTTTTGTCTGCACTTTTGCCGAAAATGTATCTTTGAGAAACGTCTGCTTCTGTTTATTAAGTTGTGTAACCTTGTAGTCCTATGTTTTTTAGATAATGGATAAGTTATAACCTTGTAAATAACTGTTCTCTCTAGATCAGCCTCTCTCACACACTTTTGTGTGGTAAAAACTTGTTGGATCATAGCTACTGTATTTCCATCGATTTTTTTTTAAAAATAATTTTGNTATGCAACTAAAGATCTAAAAAAAAAAAA]

[+] EMBL AK120523             [GATAGGGGAGAGGAGGGCTCAGGCGGCCATGGAGAAGTCGCCGCCGGAGACAGCCGCGGCGGCCGCGGAGGTGGCGGCGCGGTTCAGGTCGCTGGTCGACACCGGGGACATCGGCGCCATCAGGCAGACGCAGCACCTCATACTG GGACGGTTGCAAGATAGCAATGCAGTTCTCACACATTTTAACGAGTACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTAGTAAAACTCGTCTTCTCAAATCCATGAAGGACGATCTTGACCATATTTTCTTGAAGCTGAGAAGCATGAAATCGAGGCTAGCGGCAACATATCCAGATGCTTTTCCCGATGGTGCAATGGCAAAAACGATGGACCAAAGACCGGACCTTGAAAGTCCGCTTGATTAAAACAGCTTATCATTTTGACTGAGATCTCCGGTTGAGTCCTTCTGTACTCATCTTGAAGAAGAATGTTTTGTCTGCACTTTTGCCGAAAATGTATCTTTGAGAAACGTCTGCTTCTGTTTATTAAGTTGTGTAACCTTGTAGTCCTATGTTTTTTAGATAATGGATAAGTTATAACCTTGTAAATAACTGTTCTCTCTAGATCAGCCTCTCTCACACACTTTTGTGTGGTAAAAACTTGTTGGATCATAGCTACTGTATTTCCATCGATTTTTTTTTAAAAATAATTTTG                              ]
[+] EMBL CA753195             [                               GAGAAGTCGCCGCCGGAGACAGCCGCGGCGGCCGCGGAGGTGGCGGCGCGGTTCAGGTCGCTGGTCGACACCGGGGACATCGGCGCCATCAGGCAGACGCAGCACCTCATACTG GGACGGTTGCAAGATAGCAATGCAGTTCTCACACATTTTAACGAGTACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTAGTAAAACTCGTCTTCTCAAATCCATGAAGGACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AY224579             [                                     TCGCCGCCGGAGACAGCCGCGGCGGCCGCGGAGGTGGAGGCGCGGTTCAGGTCGCTGGTCGACACCGGGGACATCGGCGCCATCAGGCAGACGCAGCACCTCATACTG GGACGGTTGCAAGATAGCAATGCAGTTCTCACACATTTTAACGAGTACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTAGTAAAACTCGTCTTCTCAAATCCATGAAGGACGATCTTGACCATATTTTCTTGAAGCTGAGAAGCATGAAATCGAGGCTAGCGGCAACATATCCAGATGCTTTTCCCGATGGTGCAATGGCAAAAACGATGGACCAAAGACCGGACCTTGAAAGTCC                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AY224483             [                                     TCGCCGCCGGAGACAGCCGCGGCGGCCGCGGAGGTGGAGGCGCGGTTCAGGTCGCTGGTCGACACCGGGGACATCGGCGCCATCAGGCAGACGCAGCACCTCATACTG GGACGGTTGCAAGATAGCAATGCAGTTCTCACACATTTTAACGAGTACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTAGTAAAACTCGTCTTCTCAAATCCATGAAGGACGATCTTGACCATATTTTCTTGAAGCTGAGAAGCATGAAATCGAGGCTAGCGGCAACATATCCAGATGCTTTTCCCGATGGTGCAATGGCAAAAACGATGGACCAAAGACCGGACCTTGAAAGTCC                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB965500             [                                                        ctGCGGNCGCGGAGGTGGCGGCGCGGTTCAGGTCGCTGGTCGACACCGGGGACATCGGCGCCATCAGGCAGACGCAGCACCTCATACTGNGGACGGTTGCAAGATAGCAATGCAGTTCTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BI306278             [                                                                           GGCGCGGTTCAGGTCGCTGGTCGACACCGGGGACATCGGCGCCATCAGGCAGACGCAGCACCTCATACTG GGACGGTTGCAAGATAGCAATGCAGTTCTCACACATTTTAACGAGTACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTAGTAAAACTCGTCTTCTCAAATCCATGAAGGACGATCTTGACCATATTTTCTTGAAGCTGAGAAGCATGAAATCGAGGCTAGCGGCAACATATCCAGATGCTTTCCCCGATGGTGCAATGGCAAAAACTATGGACCAAAGACCGGACCTTGAAAGTCCGCTTGATTAAAACAGCTTATCATTTTGACTGAGATCTCCGGTTGAGTCCTTCTGTACTCATCTTGAAGAAGAATGTTTTGTCTGCACTTTTGCCGAAAATGTATCTTTGAGAAACGTCTGCTTCTGTTTATTAAGTTGTGTAACCTTGTAGTCCTATGTTTTTTAGATAATGGATAAGTTATAA                                                                                                                                                 ]
[+] EMBL CB096249             [                                                                                                                   GCCATCAGGCAGACGCAGCACCTCATACTG GGACGGTTGCAAGATAGCAATGCAGTTCTCACACATTTTAACGAGTACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTAGTAAAACTCGTCTTCTCAAATCCATGAAGGACGATCTTGACCATATTTTCTTGAAGCTGAGAAGCATGAAATCGAGGCTAGCGGCAACATATCCAGATGCTTTTCCCGATGGTGCAATGGCAAAAACGATGGACCAAAGACCGGACCTTGAAAGTCCGCTTGATTAAAACAGCTTATCATTTTGACTGAGATCTCCGGTTGAGTCCTTCTGTACTCATCTTGAAGAAGAATGTTTTGTCTGCACTTTTGCCGAAAATGTATCTTTGAGAAACGTCTGCTTCTGTTTATTAAGTTGTGTAACCTTGTAGTCCTATGTTTTTTAGATAATGGATAAGTTATAACCTTGTAAATAACTGTTCTCTCTAGATCAGCCTCTCTCACACACTTTTGTGTGGTAAAAACTTGTTGGATCATAGCTACTGTATTTCCATCGATTTTTTTAAAAAAATAATTTTGNTATGCAACTAAAGATCTAAAAAAAAAAAA]


>consensus_12611#1 GATAGGGGAGAGGAGGGCTCAGGCGGCCATGGAGAAGTCGCCGCCGGAGACAGCCGCGGC GGCCGCGGAGGTGGCGGCGCGGTTCAGGTCGCTGGTCGACACCGGGGACATCGGCGCCAT CAGGCAGACGCAGCACCTCATACTGGGACGGTTGCAAGATAGCAATGCAGTTCTCACACA TTTTAACGAGTACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTAGTAAAAC TCGTCTTCTCAAATCCATGAAGGACGATCTTGACCATATTTTCTTGAAGCTGAGAAGCAT GAAATCGAGGCTAGCGGCAACATATCCAGATGCTTTTCCCGATGGTGCAATGGCAAAAAC GATGGACCAAAGACCGGACCTTGAAAGTCCGCTTGATTAAAACAGCTTATCATTTTGACT GAGATCTCCGGTTGAGTCCTTCTGTACTCATCTTGAAGAAGAATGTTTTGTCTGCACTTT TGCCGAAAATGTATCTTTGAGAAACGTCTGCTTCTGTTTATTAAGTTGTGTAACCTTGTA GTCCTATGTTTTTTAGATAATGGATAAGTTATAACCTTGTAAATAACTGTTCTCTCTAGA TCAGCCTCTCTCACACACTTTTGTGTGGTAAAAACTTGTTGGATCATAGCTACTGTATTT CCATCGATTTTTTTTTAAAAATAATTTTGNTATGCAACTAAAGATCTAAAAAAAAAAAA



consensusID : consensus_12611#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence
                              [AGACAAGGGGGATATGGAGGAGTGGTCACCNCCGGCATTTCCGTCGCTGGTGGTGNGGAGCCCCAGGCAGACGGTCAGCCTTTTCCGGAACCGTCACCCATGGCGGGAGTTTCGGTCGCCCCCCACATCCACATCCACCTCGTTGGCCGGTGGCCCCAAGCTGTCGGAAGTTTATGGCTTTGTGGGATCCATCACCACCGTCATCGCCACCACTGTCTACCTTGTCTGGGCTTACATGCCTGAGCGTTGCCTCCGCTCTCTTGGCATCACCTACTACCCGAGCAGGTATTGGGCCCCTGCAGTGCCATCGTTTGTGATAGTAGCGACGGCCCTTTGCATGGTCGTTTATGTGGGCTTCAACTTTCTGGCCACTCCTCTCCCCCACTTCCTTTAACACCATTTTTGACGAGTACAGTCGAGAGCGGACCATGTTTGACCCTGCAAATGCAAATGCAACGGGAGAAGAGGAGGAGGTAGAGAGGCCCATCGAACCTATTTCAGACCTTAGCATTGGCCAGATAAACAGTTTTATGTTTGGTGATCTGCAGAAAAGAGCCCAACAATTTTGAATTGTAGGATCAGTGCTGCTTTTGCAACCTGATAGGCTTTTGTGTAACTGAGCCCTGAATTTATGATAGAGATGGGTTTTACCCTGTTGAGATGAAAAAAAAAAAAAA]

[-] EMBL CA762088             [AGACAAGGGGGATATGGAGGAGTGGTCACCNCCGGCATTTCCGTCGCTGGTGGTGNGGAGCCCCAGGCAGACGGTCAGCCTTTTCCGGAACCGTCACCCATGGCGGGAGTTTCGGTCGCCCCCCACATCCACATCCACCTCGTTGGCCGGTGGCCCCAAGCTGTCGGAAGTTTATGGCTTTGTGGGATCCATCACCACCGTCATCGCCACCACTGTCTACCTTGTCTGGGCTTACATGCCTGAGCGTTGCCTCCGCTCTCTTGGCATCACCTACTACCCGAGCAGGTATTGGGCCCCTGCAGTGCCATCGTTTGTGATAGTAGCGACGGCCCTTTGCATGGTCGTTTATGTGGGCTTCAACTTTCTGGCCACTCCTCTCCCCCACTTCCTTTAACACCATTTTTGACGAGTACAGTCGAGAGCGGACCATGTTTGACCCTGCAAATGCAAATGCAACGGGAGAAGAGGAGGAGGTAGAGAGGCCCATCGAACCTATTTCAGACCTTAGCATTGGCCAGATAAACAGTTTTATGTTTGGTGATCTGCAGAAAAGAGCCCAACAATTTTGAATTGTAGGATCAGTGCTGCTTTTGCAACCTGATAGGCTTTTGTGTAACTGAGCCCTGAATTTATGATAGAGATGGGTTTTACCCTGTTGAGATGAAAAAAAAAAAAAA]


>consensus_12611#2 AGACAAGGGGGATATGGAGGAGTGGTCACCNCCGGCATTTCCGTCGCTGGTGGTGNGGAG CCCCAGGCAGACGGTCAGCCTTTTCCGGAACCGTCACCCATGGCGGGAGTTTCGGTCGCC CCCCACATCCACATCCACCTCGTTGGCCGGTGGCCCCAAGCTGTCGGAAGTTTATGGCTT TGTGGGATCCATCACCACCGTCATCGCCACCACTGTCTACCTTGTCTGGGCTTACATGCC TGAGCGTTGCCTCCGCTCTCTTGGCATCACCTACTACCCGAGCAGGTATTGGGCCCCTGC AGTGCCATCGTTTGTGATAGTAGCGACGGCCCTTTGCATGGTCGTTTATGTGGGCTTCAA CTTTCTGGCCACTCCTCTCCCCCACTTCCTTTAACACCATTTTTGACGAGTACAGTCGAG AGCGGACCATGTTTGACCCTGCAAATGCAAATGCAACGGGAGAAGAGGAGGAGGTAGAGA GGCCCATCGAACCTATTTCAGACCTTAGCATTGGCCAGATAAACAGTTTTATGTTTGGTG ATCTGCAGAAAAGAGCCCAACAATTTTGAATTGTAGGATCAGTGCTGCTTTTGCAACCTG ATAGGCTTTTGTGTAACTGAGCCCTGAATTTATGATAGAGATGGGTTTTACCCTGTTGAG ATGAAAAAAAAAAAAAA



consensusID : consensus_12611#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence
                              [TCGCCACTGGCGTGGTTCAGGTTGCTGGTCAACAATGAAGACGTCGTTGCCATAAAGCAGATGCAGCATCTCATACTGGGACGATTGCAAGATAGTAATGCAGTTCTCACACATTTTAATGAATACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTGGTAAAACTCGTCTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGGCGCAATGGCAGAGACGATGGACCAAAGACCGGACCTTGAAAGTCC]

[+] EMBL AY224578             [TCGCCACTGGCGTGGTTCAGGTTGCTGGTCAACAATGAAGACGTCGTTGCCATAAAGCAGATGCAGCATCTCATACTGGGACGATTGCAAGATAGTAATGCAGTTCTCACACATTTTAATGAATACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTGGTAAAACTCGTCTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGGCGCAATGGCAGAGACGATGGACCAAAGACCGGACCTTGAAAGTCC]


>consensus_12611#3 TCGCCACTGGCGTGGTTCAGGTTGCTGGTCAACAATGAAGACGTCGTTGCCATAAAGCAG ATGCAGCATCTCATACTGGGACGATTGCAAGATAGTAATGCAGTTCTCACACATTTTAAT GAATACTCTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTGGTAAAACTCGTCTT CTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGAGGCATGAAATCG AGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGGCGCAATGGCAGAGACGATGGAC CAAAGACCGGACCTTGAAAGTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      GCCTCCGCCTCCGGCTCCGGCGATCCCCATCCATCCCGCGAGCGAGCAGGGCGCCGTCGT 60
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      TCTTCCTGCCGCATCCATCCTGGTGAGCACATCCTCCGCCACCGCCGCCTGCCCCGATCC 120
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      CCATCCATCGCGGCGCGCGCGAGCTCGTCCTGCTGCTTCCGCCGCATCGGCTCATTGACA 180
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      CTCAAGTCAAAAAAGAAAAGGAGAGAAAGGGGGATATGGAGGAGTGGTCACCACCGTCAT 240
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      CTCCGTCGCTGGTGGTGCGGAGCCCCAGGCAGACGGTCAGCCTTCTCCGGAACCGTCACC 300
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      CATGGCGGGAGTCTCGGTCGCCCCCCACATCCACATCCACCTCGTTGGCCGGTGGCCCCA 360
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      AGCTGTCGGAAGTTTATGGCTTTGTGGGATCCATCACCACCGTCATCGCCACCACTGTCT 420
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      ACCTTGTCTGGGCTTACATGCCTGAGCGTTGCCTCCGCTCTCTTGGCATCACCTACTACC 480
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      CGAGCAGGTATTGGGCCCTTGCAGTGCCATCGTTTGTGATAGTAGCGACGGCACTTTGCA 540
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      ------------------------------------------------------------
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      TGGTCGTTTATGTGGGCTTCAACTTCCTGGCCACTCCTCCCCCCACTTCCTTTAACACCA 600
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      -----------------------------------------------------GATAGGG 7
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      TTTTTGACGAGTACAGTCGAGAGCGGACCATGTTTGACCCTGCAAATGCAAATGCAACGG 660
consensus_12611#2      ------------------------------------------------------------
                                                                                   

consensus_12611#1      GAGAGGAGGGCTCAGGCGGCCATGGAGAAGTCGCCGCCGGAGACAGCCGCGGCGGCCGCG 67
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      GAGAAGAGGAGGAGGCGTGACTTCTGTGGGAGTTGAGAGGAGGAAGAGACCATGGAGAAG 720
consensus_12611#2      --------------------------------------------------AGACAAGGGG 10
                                                                                   

consensus_12611#1      GAGGTGGCGGCGCGGTTCAGGTCGCTGGT--CGACACCGGGGACATCGGCGCCATCAGGC 125
consensus_12611#3      TCGCCACTGGCGTGGTTCAGGTTGCTGGT--CAACAATGAAGACGTCGTTGCCATAAAGC 58
consensus_12611#0      TCGCCCCTGGGGTGGTTCAGGTTGCTGGT--CAACAATGAAGACGTTGTTGCCATAAAGC 778
consensus_12611#2      GATATGGAGGAGTGGTCACCNCCGGCATTTCCGTCGCTGGTGGTGN-GGAGCC-CCAGGC 68
                               ** * ***       *    *  *  *   *  *     *  ***   * **

consensus_12611#1      AGACGCAGCACCTCATACTGGGACGGTTGC--AAGATAGCAATG-CAGTTCTCACACATT 182
consensus_12611#3      AGATGCAGCATCTCATACTGGGACGATTGC--AAGATAGTAATG-CAGTTCTCACACATT 115
consensus_12611#0      AGATGCAGCTTTTCATTTTGGGAGGATTGC--AAGATAGTAATG-CAGTTTTCCCCCATT 835
consensus_12611#2      AGACG-GTCAGCCTTTTCCGGAACCGTCACCCATGGCGGGAGTTTCGGTCGCCCCCCACA 127
                       *** *   *      *   ** *   *  *  * *   * * *  * **   * * **  

consensus_12611#1      TTAACGAGTACTCTGAACAATGCTT-TGCGGAGGTGTCTAATGACTTTG--CTAGTAAAA 239
consensus_12611#3      TTAATGAATACTCTGAACAATGCTT-TGCGGAGGTGTCTAATGACTTTG--CTGGTAAAA 172
consensus_12611#0      TTAATGAATACTTTGAACAATGCTT-TGGGGAGGTGTTTAATGACTTTG--CTGGTAAAA 892
consensus_12611#2      TCCACATCCACCTCGTTGGCCGGTGGCCCCAAGCTGTCGGAAGTTTATGGCTTTGTGGGA 187
                       *  *     **   *      * *       ** ***   * *  * **   * **   *

consensus_12611#1      CTCGTCTTC----TCAAATCCATGAAGGACGATCTTGACCATATTTTCTTGAAGCTGAGA 295
consensus_12611#3      CTCGTCTTC----TCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGA 228
consensus_12611#0      CTTGTTTTT----TCAAGTCCATGAAGGGTGATTTTGCCCATATTTTCCTGAAGTTGAGA 948
consensus_12611#2      TCCATCACCACCGTCATCGCCACCACTGTCTACCTTGTCTGGGCTTACATGC--CTGAGC 245
                           *        ***   ***  *  *   *  *** *     ** * **    **** 

consensus_12611#1      AGCATGAAATCGAGGCTAGCGGCAACA--TATCCAGATGCTTTTCCCGATGGTGCAATGG 353
consensus_12611#3      GGCATGAAATCGAGGTTAGCGGCAACA--TATCCAGATGCTTTTCCTACTGGCGCAATGG 286
consensus_12611#0      GGCATGAAATCGAGGTTAGGGGCAACA--TATCCAGATGCTTTTCCTTCTGGCGCAATGG 1006
consensus_12611#2      GTTGCCTCCGCTCTCTTGGCATCACCTACTACCCGAGCAGGTATTGGGCCCCTGCAGTGC 305
                                 *     * *   ** *   ** **       * *         *** ** 

consensus_12611#1      CAAAAACGATGG-ACCAAAGACCGGACCTTGAAAGTCCGCTTGATTAAAACAGCTTATCA 412
consensus_12611#3      CAGAGACGATGG-ACCAAAGACCGGACCTTGAAAGTCC---------------------- 323
consensus_12611#0      CAGAGACGATGG-ACCAAAGCCCGGCCCTTGAAAGTCCTTTTGATTAAAACAGTTTATCG 1065
consensus_12611#2      CATCGTTTGTGATAGTAGCGACGGCCCTTTGCATGGTCGTTTATGTGGGCTTCAACTTTC 365
                       **       **  *  *  * * *  * *** * *  *                      

consensus_12611#1      T-----TTTGAC--TGAGATCTCCGGTTGAGTCCTTCTGTACT--CATCTTG-------A 456
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      TCCCCTTTTGGTAATGAGATTTACGGTTGAGTTTTTGTGTTCCGCCATTTTGGGAACTCA 1125
consensus_12611#2      TGGCCACTCCTCTCCCCCACTTCCTTTAACACCATTTTTGACGAGTACAGTC-------- 417
                                                                                   

consensus_12611#1      AGAAGAATGTT---TTGTCTGCACTTTTGCCGAAAATGTATCTTTGAGAAACGTCTGCTT 513
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      AGAAGAATGTTGTTCTTTTTGCCCTTTTGCTGAAAATGTATTTTTGAGAAACGGCTGCTT 1185
consensus_12611#2      --GAGAGCGGACCATGTTTGACCCTGCAAATGCAAATGCAACGGGAGAAGAGGAGGAGGT 475
                                                                                   

consensus_12611#1      CTGTTTATTAAGTTGTGTAACCTTGTAGTCCTATGTTTTTTAGATAATGGATAAGTTATA 573
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      CTGTTTATAAAGTTG--TACCCTTGTACTCCTATGTTTTTTGTGATATAAATGGAAAGGG 1243
consensus_12611#2      AGAGAGGCCCATCGAACCTATTTCAGACCTTAGCATTGGCCAGATAAACAGTTTTATGTT 535
                                                                                   

consensus_12611#1      ACCTTGTAAATAACTGTTCTCTCTAGATCAGCCTCTCTCACACACTTTTGTGTGGTAAAA 633
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      ------------------------------------------------------------
consensus_12611#2      TGGTGATCTGCAGAAAAGAGCCCAACAATTTTGAATTGTAGGATCAGTGCTGCTTTTGCA 595
                                                                                   

consensus_12611#1      ACTTGTTGGATCATAGCTACTGTATTTCCATCGATTTTTTTTTAAAAATAATTTTGNTAT 693
consensus_12611#3      ------------------------------------------------------------
consensus_12611#0      ------------------------------------------------------------
consensus_12611#2      ACCTGATAGGCTTTTG-TGTAACTGAGCCCTGAATTTATGATAGAGATGGGTTTTACCCT 654
                                                                                   

consensus_12611#1      GCAACTAAAGATCTAAAAAAAAAAAA- 719
consensus_12611#3      ---------------------------
consensus_12611#0      ---------------------------
consensus_12611#2      G----TTGAGATGAAAAAAAAAAAAAA 677
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)