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Oryza sativa
cluster # 12620 cluster # 12620       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12620#0 length = 850 sequences # 10  
consensus_12620#1 length = 235 sequences # 1  

consensusID : consensus_12620#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 850
fasta sequence
                              [CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC-TTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC-TTTGGTTGTCTAGATGTAAG-CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTAT----AAAAAAAAAAAAAAAA]

[+] EMBL AK071587             [CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCTCAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAG CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACT                                                                                               ]
[+] EMBL CA764445             [ GATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGACGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCCAGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTTGGTTGGCTAGATGTAAG CCGCCCTGGAATTTTCTATTTNT TCATAGAAAGGCATCTCTTAAACTGNGCCTGATCTGATCGTCAAGNTAGNGCAACTTTTAATTGACGGAATTACGTCTGGAACATGNAGNTNTGC ACTAANACTGCAGAAGG AATTGCAGAACTGgcat                    ]
[+] EMBL CF295305             [         CACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACA                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU172963             [          ACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF302081             [            CAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGC                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF305253             [             AGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACTAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTGCCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCTTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAA                                                                                                                                                                                                          ]
[+] EMBL OSSRP14              [                                         AAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAGCCCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTAA    AAAAAAAAAA      ]
[+] EMBL OSS1544A             [                                                  GAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAG ACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTTGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CA763198             [                                                                                                                                                                  AAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGCCAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCCCCGAAGAAGCAGAAGAAAGCCCCGTCTTCAAAGAAATTTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCCTTTTACTCTTATTCATGTTTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAA CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATTGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTTTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTATCTGGAAAAAAAAAAAAAAAA]
[+] EMBL AU033038             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                gntgGGGTGTAGTCAAGNCATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTNCCGTCGNCATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAG CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGNATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTAA    AAAAAAAAAA      ]


>consensus_12620#0 CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAA ACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCG TTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTC ACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGA GAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACC GCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCC CATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAG AAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCA GGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGA GTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGAT GAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCT TTGGTTGTCTAGATGTAAGCCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTC TTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTC TGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTATAAAAAA AAAAAAAAAA



consensusID : consensus_12620#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence
                              [TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGNGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTGGTTGTCTAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNNTTNA]

[+] EMBL AU058358             [TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGNGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTGGTTGTCTAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNNTTNA]


>consensus_12620#1 TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGNGTAAGATGG GTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGT GAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTGGTTGTC TAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNNTTNA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12620#0      CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAA 60
consensus_12620#1      ------------------------------------------------------------
                                                                                   

consensus_12620#0      ACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCG 120
consensus_12620#1      ------------------------------------------------------------
                                                                                   

consensus_12620#0      TTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTC 180
consensus_12620#1      ------------------------------------------------------------
                                                                                   

consensus_12620#0      ACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGA 240
consensus_12620#1      ------------------------------------------------------------
                                                                                   

consensus_12620#0      GAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACC 300
consensus_12620#1      ------------------------------------------------------------
                                                                                   

consensus_12620#0      GCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCC 360
consensus_12620#1      ------------------------------------------------------------
                                                                                   

consensus_12620#0      CATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAG 420
consensus_12620#1      ------------------------------------------------------------
                                                                                   

consensus_12620#0      AAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCA 480
consensus_12620#1      ------------------------------------------------------------
                                                                                   

consensus_12620#0      GGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGA 540
consensus_12620#1      ---------TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGN 51
                                ************************************************** 

consensus_12620#0      GTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGAT 600
consensus_12620#1      GTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGAT 111
                       ************************************************************

consensus_12620#0      GAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCT 660
consensus_12620#1      GAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCT 171
                       ************************************************************

consensus_12620#0      TTGGTTGTCTAGATGTAAGCCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTC 720
consensus_12620#1      TTGGTTGTCTAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNN 231
                       ************************ ***************** * ***** ***  *   

consensus_12620#0      TTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTC 780
consensus_12620#1      TTNA-------------------------------------------------------- 235
                       ** *                                                        

consensus_12620#0      TGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTATAAAAAA 840
consensus_12620#1      ------------------------------------------------------------
                                                                                   

consensus_12620#0      AAAAAAAAAA 850
consensus_12620#1      ----------
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)