These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2238 fasta sequence [CTGTCTCCTCCTCCTCTTCTTCGGTTCTTCCTCCGCCCCATTCCACCCAATCCTGAATCC-GCCCCCCCCCCC-CCCCCCCGAAGCAACAGCGGCGGCGGCTGGCGGGAGGAGGAAGGCAAGGATCCGGCGGGGAGAGGCCGCCTCTCTTTCCCTTCCTTCGCGTCCGTCGTCCTGCTTGCTGCGGCCTGCAGCTGAGCTTGGCGGACAATAATACATATGCTTGTCCTTGCAAACCTATAGTACAGCGATCCTTTCTGTGGAACATTGCATCAGTCTAGAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATCGCTTTTCCAGTGGTGACAGGTTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCCATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGAAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTGCTTGGATTGCTTGTGTTACTGTATCTGGTGCAATACTATTCCTTGTCATGACTGGAATGCTCAATCGTGCATTGCCTAGCAAATCACAAAGAGATGCCTGGTTTGAAGTAAACAACCAGATTTTGAATGCATTATTCACACTCATGTGCCTTTATCAACACCCAAAGCGGATATATTACTTTGTGCTGTTGTGTCGATGGGAGCAAAAGGATGTTTTGGTCCTTAGAAAAACATATTGCAAAAATGGAACATACAAGCCCAATGAATGGATGCACATGATGGTGGTTGTGGTCCTCCTTAATTTGAACTGCTTTGCTCAGTATGCCTTATGTGGTCTCAACCTAGGATACCGCAGATCTGAACGACCTCCTATCGGTGTTGGCCTGACCATTTCCGTTGCTATCGGGGCAGCGGCATTTGCTGGATTGTATAACATTATCAGTCCTCTTGGGAAGGATTATGACACAGAACTGACTGAAGTTGACCAAGAAGCACAAACTGAACTCACCAGGCCAGCAACCTCACGAACATCACTTGAAAAGAGATACTCTTTCATTCAAAGTGAAGAGCGCCGTTTTGTGGAGAGTAGGCCTGAGTGGGTTGGTGGACTAATGGATTTCTGGGACAATATATCTCTTGCCTACCTGTCAATTTTCTGCAGTTGCTGTGTGTTTGGATGGAATATGCAGAGGCTTGGATTTGGTAACATGTATGTCCATATTGCTACATTTATGCTCTTTTGCCTTGCTCCGTTTTTCATCTTCAACCTGGCTGCTGTCAATATTAACAATGAAAACCTTCGAGAAGCATTAGGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG-CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA-TGTAATGACCCCATTGTCGCGCGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA-CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCCATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG-TGAATGGTAAGCGAGAGTTGTCAATTTACTAAAAAAAAAAAAGA] [+] EMBL CB633691 [CTGTCTCCTCCTCCTCTTCTTCGGTTCTTCCTCCGCCCCATTCCACCCAATCCTGAATCCGGCCCCCCCCCCCACCCCCCCGAAGCAACAGCGGCGGCGGCTGGCGGGAGGAGGAAGGCAAGGATCCGGCGGGGAGAGGCCGCCTCTCTTTCCCTTCCTTCGCGTCCGTCGTCCTGCTTGCTGCGGCCTGCAGCTGAGCTTGGCGGACAATAATACATATGCTTGTCCTTGCAAACCTATAGTACAGCGATCCTTTCTGTGGAACATTGCATCAGGCTAAAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATTGCTTTTCCAGTGGGGACAGGGTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCGATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGAAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTG ] [+] EMBL AK102680 [ CTTCCTCCGCCCCACTCCACCCAATCCTGAATCC GCCCCCCCCCCC CCCCCCCGAAGCAGCAGCGGCGGCGGCTGGCGGGAGGAGGAAGGCAAGGATCCGGCGGGGAGAGGCCGCCTCTCTTTCCCTTCCTTCGCGTCCGTCGTCCTGCTTGCTGCGGCCTGCAGCTGAGCTTGGCGGACAATAATACATATGCTTGTCCTTGCAAACCTATAGTACAGCGATCCTTTCTGTGGAACATTGCATCAGTCTAGAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATCGCTTTTCCAGTGGTGACAGGTTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCCATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGGAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTGCTTGGATTGCTTGTGTTACTGTATCTGGTGCAATACTATTCCTTGTCATGACTGGAATGCTCAATCGTGCATTGCCTAGCAAATCACAAAGAGATGCCTGGTTTGAAGTAAACAACCAGATTTTGAATGCATTATTCACACTCATGTGCCTTTATCAACACCCAAAGCGGATATATTACTTTGTGCTGTTGTGTCGATGGGAGCAAAAGGATGTTTTGGTCCTTAGAAAAACATATTGCAAAAATGGAACATACAAGCCCAATGAATGGATGCACATGATGGTGGTTGTGGTCCTCCTTAATTTGAACTGCTTTGCTCAGTATGCCTTATGTGGTCTCAACCTAGGATACCGCAGATCTGAACGACCTCCTATCGGTGTTGGCCTGACCATTTCCGTTGCTATCGGGGCAGCGGCATTTGCTGGATTGTATAACATTATCAGTCCTCTTGGGAAGGATTATGACACAGAACTGACTGAAGTTGACCAAGAAGCACAAACTGAACTCACCAGGCCAGCAACCTCACGAACATCACTTGAAAAGAGATACTCTTTCATTCAAAGTGAAGAGCGCCGTTTTGTGGAGAGTAGGCCTGAGTGGGTTGGTGGACTAATGGATTTCTGGGACAATATATCTCTTGCCTACCTGTCAATTTTCTGCAGTTGCTGTGTGTTTGGATGGAATATGCAGAGGCTTGGATTTGGTAACATGTATGTCCATATTGCTACATTTATGCTCTTTTGCCTTGCTCCGTTTTTCATCTTCAACCTGGCTGCTGTCAATATTAACAATGAAAACCTTCGAGAAGCATTAGGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGCGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCCATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG TGAATGGTAAGCGAGAGTTGTCAA ] [+] EMBL CF303996 [ GCTTGCTGCGGCCTGCAGCTGAGCTTGGCGGACAATAATACATATGCTTGTCCTTGCAAACCTATAGTACAGCGATCCTTTCTGTGGAACATTGCATCAGTCTAGAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATCGCTTTTCCAGTGGTGACAGGTTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCCATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGAAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTGCTTGGATTGCTTGTGTTACTGTATCTGGTGCAATACTATTCCTTGTCATGACTGGAATGCTCAAT ] [+] EMBL CB674568 [ TTTCTGTGGAACATTGCATCAGTCTAGAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATCGCTTTTCCAGTGGTGACAGGTTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCCATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGAAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTGCTTGGATTGCTTGTGTTACTGTATCTGGTGCAATACTATTCCTTGTCATGACTGGAATGCTCAATCGTGCATTGCCTAGCAAATCACAAAGAGATGCCTGGTTTGAAGTAAACAACCAGATTTTGAATGCATTATTCACACTCATGTGCCTTTATCAACACCCAAAGCGGATATATTACTTTGTGCTGTTGTGTCGATGGGAGCAAAAGGATGTTTTGGTCCTTAGAAAAACATATTGCAAAAATGGAACATACAAGCCCAATGAATGGATGCACATGATGGTGGTTGTGGTCCTCCTTAATTTGAACTGCTTTGCTCAGTATGCCTTATGTGGTCTCAACCTANGATACCGCAGATCTGA ] [+] EMBL CB647496 [ GTGCCTTTCTCAACACCCAAAGCGGATATATTACTTTGTGCTGTTGTGTCGATGGGAGCAAAAGGATGTTTTGGTCCTTACAAAAACATATTGCAAAAATGGAACATACAAGCCCAATGAATGGATGCACATGATGGTGGTTGTGGTCCTCCTTAATTTGAACTGCTTTGCTCAGTATGCCTTATGTGGTCTCAACCTAGGATACCGCAGATCTGAACGACCTCCTATCGGTGTTGGCCTGACCATTTCCGTTGCTATCGGGGCAGCGGCATTTGCTGGATTGTATAACATTATCAGTCCTCTTGGGAAGGATTATGACACAGAACTGACTGAAGTTGACCAAGAAGCACAAACTGAACTCACCAGGCCAGCAACCTCACGAACATCACTTGAAAAGAGATACTCTTTCATTCAAAGTGAAGAGCGCCGTTTTGTGGAGAGTAGGCCTGAGTGGGTTGGTGGACTAATGGATTTCTGGGACAATATATCTCTTGCCTACCTGTCAATTTTCTGCAGTTGCTGTGTGTTTGGATGGAATATGCAGAGGCTTGGATTTGGTAACATGTATGTCCATATTGCTACATTTATGCTCTTTTGCCTTGCTCCGTTTTTCATCTTCAACCTGGCTGCTGTCAATATTAACAATGAAAACCTTCGAGAAGCATTANGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGANGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAAGCACAGATTGCTTCCAGTGGTTGTGCT ] [-] EMBL CB674569 [ TTGCTACATTTATGCTCTTTTGCCTTGCTCCGTTTTTCATCTTCAACCTGGCTGCTGTCAATATTAACAATGAAAACCTTCGAGAAGCATTAGGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGCGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACCCCTTTTTTTTTTCATCTGCAGCTTCCATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG TGAATGGTAAGCG ] [-] EMBL CB633692 [ TGTCAATATTAACAATGAAAACCTTCGAGAAGCATTAGGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGTGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCTATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG GGAATGGTAAGCGAGAGTTGTCAATTTACTAAAAAAAAAAAAGA] [-] EMBL CB647497 [ ACTGTATGGTGGCTTTGGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGCGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCCATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG TGAATGGTAAGCGAGAGTTGT ] [+] EMBL BQ909212 [ TTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTGCCTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGTGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCACCAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCTATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAGCTGAATGGTAAGCGAGAGTTGTCAA A AAAAAAA ] [+] EMBL BI810482 [ TGCGAGAAGCCAGCAGTGTAATGACCCCATT TCGCGTGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTAC ] [+] EMBL BI812513 [ GCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCTATGC ACTGCC TTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG TGAATGGTAAGCGAGAGTTGTC ATTTACTAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||