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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1452 fasta sequence
[AAAAAGAAACCTAGTTCGTCACCGTCACCGACGCCGGGAAGGAGGAGGAAGCGGGGAGATGGCGGCGGCGGCGGCGGCGCGGCTGCCGCGGACGGA-GGCCAG-GGTGCTGTCGGGGCACGAGGGGGCGGTGCTGGCGGTGCGATTCAATCGGGACGGGAACTACTGCCTGAGCTGCGGCAAGGACCGGATCATCCGCCTCTGGAACCCCCACACCGGCGCCCTCGTCAAGCCCTACAAGTCCCACGGCCGCGAGGTCCGCGACGTGAACTCCTCCTCGGACAATGCCAAGCTGGTGTCGTGCGGCGGGGACAGGCAGGTCTTCTACTGGGATGTCGCATCTGCCCGTGTCATCCGCAAGTTCCGCGGCCACAACAGCGAGATCAATTCAGTGAAGTTTAATGAGTTTAACACAGTTGTAGTCTCAGCTGGCTATGATCGCACAGTGCGTGCATTTGATTGCAGATCACAGAGCAGTGACCCTATTCAGACAATTGATACTTTTCAAGATAGTGTAATGTCAGTTAATTTAACCAACACAGAAATAATTGCTGGCAGTGTTGATGGTACTATCCGCACATTTGACATTCGCATGGGTAGGGAGACTGTCGACAACTTGGGGCATCCTGTCAACTGTATATCTTTGTCAAATGACCGCAATTGCCTATTAGCTAATTGTTTGGATTCTACTGTGAGGCTTCTAGACAAGTCCACTGGGGAACTGTTACAAGAGTACAAAGGGCATATATGCAAGTCCTTCAAGATGGATTGCTGCCTAACCAACGATGATGCATTTGTTGTTGGTGGATCCGAGGATGGTTACATTTTCTTCTGGGAGTTAGTGGATGCACCTGTTGTTTCAAGCTTTCGAGCTCATAGTTCTGTGGTCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGGCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGGCAGCAATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACGGCTCTTTTGGTCATAAATAACTTAGTTCTTTTCCTCTAAAAAAAATTT]
[+] EMBL AK105242 [AAAAAGAAACCTAGTTCGTCACCGTCACCGACGCCGGGAAGGAGGAGGAAGCGGGGAGATGGCGGCGGCGGCGGCGGCGCGGCTGCCGCGGACGGA GGCCAG GGTGCTGTCGGGGCACGAGGGGGCGGTGCTGGCGGTGCGATTCAATCGGGACGGGAACTACTGCCTGAGCTGCGGCAAGGACCGGATCATCCGCCTCTGGAACCCCCACACCGGCGCCCTCGTCAAGCCCTACAAGTCCCACGGCCGCGAGGTCCGCGACGTGAACTCCTCCTCGGACAATGCCAAGCTGGTGTCGTGCGGCGGGGACAGGCAGGTCTTCTACTGGGATGTCGCATCTGCCCGTGTCATCCGCAAGTTCCGCGGCCACAACAGCGAGATCAATTCAGTGAAGTTTAATGAGTTTAACACAGTTGTAGTCTCAGCTGGCTATGATCGCACAGTGCGTGCATTTGATTGCAGATCACAGAGCAGTGACCCTATTCAGACAATTGATACTTTTCAAGATAGTGTAATGTCAGTTAATTTAACCAACACAGAAATAATTGCTGGCAGTGTTGATGGTACTATCCGCACATTTGACATTCGCATGGGTAGGGAGACTGTCGACAACTTGGGGCATCCTGTCAACTGTATATCTTTGTCAAATGACCGCAATTGCCTATTAGCTAATTGTTTGGATTCTACTGTGAGGCTTCTAGACAAGTCCACTGGGGAACTGTTACAAGAGTACAAAGGGCATATATGCAAGTCCTTCAAGATGGATTGCTGCCTAACCAACGATGATGCATTTGTTGTTGGTGGATCCGAGGATGGTTACATTTTCTTCTGGGAGTTAGTGGATGCACCTGTTGTTTCAAGCTTTCGAGCTCATAGTTCTGTGGTCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGGCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGGCAGCAATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACGGCTCTTTTGGTCATAAATAACTTAGTTCTTTTCCTCTAAAAAAAATTT]
[+] EMBL OSC509 [ CGTCACCGACGCCGGGAAGGAGGAGGAAGCGGGGAGATGGCGGCGGCGGCGGCGGC NGGCTNCNG GANCGGANGGCCAGNGGTGCTGTCGGGGCACGAGGGGGCGGTGCTGGCGGTGCGATTCAATCGGGACGGGAACTACTGCCTGAGCTGCGGCAAGGACCGGATCATCCGCCTCTGGAACCCCCACACCGGCGCCCTCGTCAAGCCCTACAAGTCCCACGGCCGCGAGGTCCGCGACGTGAACTCCTCCTCGGACAATGCCAAGCTGGTGTCGTGCGGCGGGGACAGGCAGGTCTTCTACTGGGATGTCGCATCTTCCCGTGTCATCC ]
[-] EMBL CB665586 [ GCATCCTGTCAACTGTATATCTTTGTCAAATGACCGCAATTGCCTATTAGCTAATTGTTTGGATTCTACTGTGAGGCTTCTAGACAAGTCCACTGGGGAACTGTTACAAGAGTACAAAGGGCATATATGCAAGTCCTTCAAGATGGATTGCTGCCTAACCAACGATGATGCATTTGTTGTTGGTGGATCCGAGGATGGTTACATTTTCTTCTGGGAGTTAGTGGATGCACCTGTTGTTTCAAGCTTTCGAGCTCATAGTTCTGTGGTCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGGCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGGCAGCAATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACGGCTCTTTTGGTCATAAAAAAaaga ]
[-] EMBL CB634028 [ ATTAGCTAATTGTTTGGATTCTACTGTGAGGCTTCTAGACAAGTCCACTGGGGAACTGTTACAAGAGTACAAAGGGCATATATGCAAGTCCTTCAAGATGGATTGCTGCCTAACCAACGATGATGCATTTGTTGTTGGTGGATCCGAGGATGGTTACATTTTCTTCTGGGAGTTAGTGGATGCACCTGTTGTTTCAAGCTTTCGAGCTCATAGTTCTGTGGTCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGGCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGGCAGCAATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACGGCTCTTTTGGTCATAAATAACTTAGTTCTTTTCCTCTA ]
consensusID : consensus_12685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1129 fasta sequence
[GCCGGGAAGGAGGAGGAAGCGGGGAGATGGCGGCGGCGGCGGCGGCGCGGCTGCCGCGGACGGAGGCCAGGGTGCTGTCGGGGCACGAGGGGGCGGTGCTGGCGGTGCGATTCAATCGGGACGGGAACTACTGCCTGAGCTGCGGCAAGGACCGGATCATCCGCCTCTGGAACCCCCACACCGGCGCCCTCGTCAAGCCCTACAAGTCCCACGGCCGCGAGGTCCGCGACGTGAACTCCTCCTCGGACAATGCCAAGCTGGTGTCGTGCGGCGGGGACAGGCAGGTCTTCTACTGGGATGTCGCATCTGCCCGTGTCATCCGCAAGTTCCGCGGCCACAACAGCGAGGTATGGACCCCAATTCTCACTGTGATGATGACCGCGCTGTTGTAATTGTTTGGTGATCGCGGTTGGATTGAGCAAGTGAGAAGTGCTCATGAAAAATTGTACTATTAAGCAGTTTCAGCACCATACTATCAGTGTGTTAAGCGCCGCTGCTATTTCAATACTAGTATTGATTTTATCTATACAGAGAGAGCACGGTTGTTTATGATAGGATTAGCAGTAGCCTGAGATTGTAGTGGAATAGAGCAGTTGGCACTGTTTATAATCAAACAACGTCTGTTCCATTGTGCTATGTGGAGAACACCACGAAATCAGCACTCTAGCATTATCGATCTAGTCACAACTAGTCAATTGCAGGGTGAATTGTGTGAAAATGAGTGTGCTGTAATGATACCTCTGTAATGGTGTTGTTGTACTTCCTTTTTAATCTAGCACTGCACATCGTCAATATGATTATTGGGATACTGAAAACAGATCAAGAACAACCTCGGTGACAGGTTTTTGATCCTTGATAATATTGCTTACATACCTCAATTCTGTCTTCCATAGATCAATTCAGTGAAGTTTAATGAGTTTAACACAGTTGTAGTCTCAGCTGGCTATGATCGCACAGTGCGTGCATTTGATTGCAGATCACAGAGCAGTGACCCTATTCAGACAATTGATACTTTTCAAGATAGTGTAATGTCAGTTAATTTAACCAACACAGAAATAATTGCTGGCAGTGTTGATGGTACTATCCGCACATTTGACATTCGCATGGGTAGGGAGACTGTCGACAACTT]
[+] EMBL CB634027 [GCCGGGAAGGAGGAGGAAGCGGGGAGATGGCGGCGGCGGCGGCGGCGCGGCTGCCGCGGACGGAGGCCAGGGTGCTGTCGGGGCACGAGGGGGCGGTGCTGGCGGTGCGATTCAATCGGGACGGGAACTACTGCCTGAGCTGCGGCAAGGACCGGATCATCCGCCTCTGGAACCCCCACACCGGCGCCCTCGTCAAGCCCTACAAGTCCCACGGCCGCGAGGTCCGCGACGTGAACTCCTCCTCGGACAATGCCAAGCTGGTGTCGTGCGGCGGGGACAGGCAGGTCTTCTACTGGGATGTCGCATCTGCCCGTGTCATCCGCAAGTTCCGCGGCCACAACAGCGAGGTATGGACCCCAATTCTCACTGTGATGATGACCGCGCTGTTGTAATTGTTTGGTGATCGCGGTTGGATTGAGCAAGTGAGAAGTGCTCATGAAAAATTGTACTATTAAGCAGTTTCAGCACCATACTATCAGTGTGTTAAGCGCCGCTGCTATTTCAATACTAGTATTGATTTTATCTATACAGAGAGAGCACGGTTGTTTATGATAGGATTAGCAGTAGCCTGAGATTGTAGTGGAATAGAGCAGTTGGCACTGTTTATAATCAAACAACGTCTGTTCCATTGTGCTATGTGGAGAACACCACGAAATCAGCACTCTAGCATTATCGATCTAGTCACAACTAGTCAATTGCAGGGTGAATTGTGTGAAAATGAGTGTGCTGTAATGATACCTCTGTAATGGTGTTGTTGTACTTCCTTTTTAATCTAGCACTGCACATCGTCAATATGATTATTGGG ]
[+] EMBL CB665585 [ CTACTGGGATGTCGCATCTGCCCGTGTCATCCGCAAGTTCCGCGGCCACAACAGCGAGGTATGGACCCCAATTCTCACTGTGATGATGACCGCGCTGTTGTAATTGTTTGGTGATCGCGGTTGGATTGAGCAAGTGAGAAGTGCTCATGAAAAATTGTACTATTAAGCAGTTTCAGCACCATACTATCAGTGTGTTAAGCGCCGCTGCTATTTCAATACTAGTATTGATTTTATCTATACAGAGAGAGCACGGTTGTTTATGATAGGATTAGCAGTAGCCTGAGATTGTAGTGGAATAGAGCAGTTGGCACTGTTTATAATCAAACAACGTCTGTTCCATTGTGCTATGTGGAGAACACCACGAAATCAGCACTCTAGCATTATCGATCTAGTCACAACTAGTCAATTGCAGGGTGAATTGTGTGAAAATGAGTGTGCTGTAATGATACCTCTGTAATGGTGTTGTTGTACTTCCTTTTAAATCTAGCACTGCACATCGTCAATATGATTATTGGGATACTGAAAACAGATCAAGAACAACCTCGGTGACAGGTTTTTGATCCTTGATAATATTGCTTACATACCTCAATTCTGTCTTCCATAGATCAATTCAGTGAAGTTTAATGAGTTTAACACAGTTGTAGTCTCAGCTGGCTATGATCGCACAGTGCGTGCATTTGATTGCAGATCACAGAGCAGTGACCCTATTCAGACAATTGATACTTTTCAAGATAGTGTAATGTCAGTTAATTTAACCAACACAGAAATAATTGCTGGCAGTGTTGATGGTACTATCCGCACATTTGACATTCGCATGGGTAGGGAGACTGTCGACAACTT]
consensusID : consensus_12685#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence
[CAACTTGGGGCATCCTGTCAACTGTATATCTTTGTCAAATGACCGCAATTGCCTATTAGCTAATTGTTTGGATTCTACTGTGAGGCTTCTAGACAAGTCCACTGGGGAACTGTTACAAGAGTACAAAGGGCATATATGCAAGTCCTTCAAGATGGATTGCTGCCTAACCAACGATGATGCATTTGTTGTTGGTGGATCCGAGGATGGTTACATTTTCTTCTGGGAGTTAGTGGATGCACCTGTTGTTTCAAGCTTTCGAGCTCATAGTTCTGTGGTCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGGCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGGCAGCAATTTGCTAGTGAGGATGAACTATATCCCCCAAGCTAAGTTTTTTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762686 [CAACTTGGGGCATCCTGTCAACTGTATATCTTTGTCAAATGACCGCAATTGCCTATTAGCTAATTGTTTGGATTCTACTGTGAGGCTTCTAGACAAGTCCACTGGGGAACTGTTACAAGAGTACAAAGGGCATATATGCAAGTCCTTCAAGATGGATTGCTGCCTAACCAACGATGATGCATTTGTTGTTGGTGGATCCGAGGATGGTTACATTTTCTTCTGGGAGTTAGTGGATGCACCTGTTGTTTCAAGCTTTCGAGCTCATAGTTCTGTGGTCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGGCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGGCAGCAATTTGCTAGTGAGGATGAACTATATCCCCCAAGCTAAGTTTTTTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762685 [CAACTTGGGGCATCCTGTCAACTGTATATCTTTGTCAAATGACCGCAATTGCCTATTAGCTAATTGTTTGGATTCTACTGTGAGGCTTCTAGACAAGTCCACTGGGGAACTGTTACAAGAGTACAAAGGGCATATATGCAAGTCCTTCAAGATGGATTGCTGCCTAACCAACGATGATGCATTTGTTGTTGGTGGATCCGAGGATGGTTACATTTTCTTCTGGGAGTTAGTGGATGCACCTGTTGTTTCAAGCTTTCGAGCTCATAGTTCTGTGGTCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGGCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGGCAGCAATTTGCTAGTGAGGATGAACTATATCCCCCAAGCTAAGTTTTTTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12685#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[TGTTTCCAAGCTTCCGAGCTCATAGTTCTNTGGTCCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCCTGCTAAACTTCATCTGTTGATGGCACCATTCGTGTTTGGACCTAAAAGTGGGAATNGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTATTGGCAGTAGTTCTGGACACGGTTCAAGGCAGCAATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACGGCTCTTTTGGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094413 [TGTTTCCAAGCTTCCGAGCTCATAGTTCTNTGGTCCACTAGCGTCAGTTATCACCCAACAAGGGCTTGCCTGCTAAACTTCATCTGTTGATGGCACCATTCGTGTTTGGACCTAAAAGTGGGAATNGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTATTGGCAGTAGTTCTGGACACGGTTCAAGGCAGCAATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACGGCTCTTTTGGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12685#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence
[ATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGCCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGTCAGCAATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGT-CCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACGGCTCTTTTTGGTCATAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA]
[+] EMBL CF331784 [ATCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGCCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGTCAGCAATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGT CCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACGGCTCTTTTTGGTCATAAAAA ]
[-] EMBL CF331785 [ TCACCCAACAAGGGCTTGCATGCTAACTTCATCTGTTGATGCCACCATTCGTGTTTGGACCTAAAAGTGGGAATTGCTGTTGTGCTGGACTCATATCCTGACAACATTGCTTATGTGGCATTATTCTCCAATTCATCTATTTTTGAAGCAGAGAGGATTGAAAAGGATAGATGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGGTGTTAAGATAAGATTGTGCTACTTGGCAGTAGTTCTGGACACGGTCAAGTCAGCAATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGACATGTGAAATACAGTCTGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAACTGGACCAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCATTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACGGCTC TTTTGGTCATAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 AAAAAGAAACCTAGTTCGTCACCGTCACCGACGCCGGGAAGGAGGAGGAAGCGGGGAGAT 60
consensus_12685#1 ------------------------------------------------------------
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 GGCGGCGGCGGCGGCGGCGCGGCTGCCGCGGACGGAGGCCAGGGTGCTGTCGGGGCACGA 120
consensus_12685#1 ------------------------------------------------------------
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 GGGGGCGGTGCTGGCGGTGCGATTCAATCGGGACGGGAACTACTGCCTGAGCTGCGGCAA 180
consensus_12685#1 ------------------------------------------------------------
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 GGACCGGATCATCCGCCTCTGGAACCCCCACACCGGCGCCCTCGTCAAGCCCTACAAGTC 240
consensus_12685#1 ------------------------------------------------------------
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 CCACGGCCGCGAGGTCCGCGACGTGAACTCCTCCTCGGACAATGCCAAGCTGGTGTCGTG 300
consensus_12685#1 ------------------------------------------------------------
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 CGGCGGGGACAGGCAGGTCTTCTACTGGGATGTCGCATCTGCCCGTGTCATCCGCAAGTT 360
consensus_12685#1 ------------------------------------------------------------
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 CCGCGGCCACAACAGCGAGATCAATTCAGTGAAGTTTAATGAGTTTAACACAGTTGTAGT 420
consensus_12685#1 ------------------------------------------------------------
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 CTCAGCTGGCTATGATCGCACAGTGCGTGCATTTGATTGCAGATCACAGAGCAGTGACCC 480
consensus_12685#1 ------------------------------------------------------------
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 TATTCAGACAATTGATACTTTTCAAGATAGTGTAATGTCAGTTAATTTAACCAACACAGA 540
consensus_12685#1 ------------------------------------------------GCCGGGAAGGAG 12
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 AATAATTGCTGGCAGTGTTGATGGTACTATCCGCACATTTGACATTCGCATGGGTAGGGA 600
consensus_12685#1 GAGGAAGCGGGGAGATGGCGGCGGCGGCGGCGGCGCGGCTGCCGCGGACGGAGGCCAGGG 72
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ---------CAACTTGGGGCATCCTGTCAACTGTATATCTTTGTCAAATGACCGCAATTG 51
consensus_12685#0 GACTGTCGACAACTTGGGGCATCCTGTCAACTGTATATCTTTGTCAAATGACCGCAATTG 660
consensus_12685#1 TGCTGTCGGGGCACGAGGGGGCGGTGCTGGCGGTGCGATTCAATCGG--GACGGGAACTA 130
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 CCTATTAGCTAATTGTTTGGATTCTACTGTGAGGCTTCTAGACAAGTCCACTGGGGAACT 111
consensus_12685#0 CCTATTAGCTAATTGTTTGGATTCTACTGTGAGGCTTCTAGACAAGTCCACTGGGGAACT 720
consensus_12685#1 CTGCCTGAGCTGCGGCAAGGACCGGATCATCCGCCTCTGGAACCCCCACACCGGCGCCCT 190
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 GTTACAAGAGTACAAAGGGCATATATGCAAGTCCTTCAAGATGGATTGCTGCCTAACCAA 171
consensus_12685#0 GTTACAAGAGTACAAAGGGCATATATGCAAGTCCTTCAAGATGGATTGCTGCCTAACCAA 780
consensus_12685#1 CGTCAAGCCCTACAAGTCCCACGGCCGCGAGGTCCGCGACGTGAACTCCTCCTCGGACAA 250
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 CGATGATGCATTTGTTGTTGGTGGATCCGAGGATGGTTACATTTTCTTCTGGGAGTTAGT 231
consensus_12685#0 CGATGATGCATTTGTTGTTGGTGGATCCGAGGATGGTTACATTTTCTTCTGGGAGTTAGT 840
consensus_12685#1 TGCCAAG----CTGGTGTCGTGCGG--CGGGGACAGGCAGGTCTTCTACTGGGATGTCGC 304
consensus_12685#3 -----------TGTTTCCAAGCTTCCGAGCTCATAGTTCTNTGGTCCACTAGCGTCAGTT 49
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 GGATGCACCTGTTGTTTCAAGCTTTCGAGCTCATAGTTCTGTGGTC-ACTAGCGTCAGTT 290
consensus_12685#0 GGATGCACCTGTTGTTTCAAGCTTTCGAGCTCATAGTTCTGTGGTC-ACTAGCGTCAGTT 899
consensus_12685#1 ATCTGCCCGTGTCATCCGCAAGTTCCGCGGCCACAACAGCGAGGT--ATGGACCCCAATT 362
consensus_12685#3 ATCACCCAACAAGGGCTTGCCTGCTAAACTTCATCTGTTGATGGCACCATTCGTGTTTGG 109
consensus_12685#4 ATCACCCAACAAGGGCTTGCATGCTAA-CTTCATCTGTTGATGCCACCATTCGTGTTTGG 59
consensus_12685#2 ATCACCCAACAAGGGCTTGCATGCTAA-CTTCATCTGTTGATGGCACCATTCGTGTTTGG 349
consensus_12685#0 ATCACCCAACAAGGGCTTGCATGCTAA-CTTCATCTGTTGATGGCACCATTCGTGTTTGG 958
consensus_12685#1 CTCACT--GTGATGATGACCGCGCTGT-TGTAATTGTTTGGTGATCGCGGTTGGATTGAG 419
**** * * * *** * ** *** ** * * * ** *
consensus_12685#3 --ACCTAAAAGTG-------GGAATNG--CTGTTGTGCTGGACTCATATCCTGACAACAT 158
consensus_12685#4 --ACCTAAAAGTG-------GGAATTG--CTGTTGTGCTGGACTCATATCCTGACAACAT 108
consensus_12685#2 --ACCTAAAAGTG-------GGAATTG--CTGTTGTGCTGGACTCATATCCTGACAACAT 398
consensus_12685#0 --ACCTAAAAGTG-------GGAATTG--CTGTTGTGCTGGACTCATATCCTGACAACAT 1007
consensus_12685#1 CAAGTGAGAAGTGCTCATGAAAAATTGTACTATTAAGCAGTTTCAGCACCATACTATCAG 479
* * ***** *** * ** ** ** * * * * * **
consensus_12685#3 TGC-TTATGTGGCATTATT-CTCCAATTC----ATCTATTTT--TGAAGCAGAGAG---- 206
consensus_12685#4 TGC-TTATGTGGCATTATT-CTCCAATTC----ATCTATTTT--TGAAGCAGAGAG---- 156
consensus_12685#2 TGC-TTATGTGGCATTATT-CTCCAATTC----ATCTATTTT--TGAAGCAGAGAG---- 446
consensus_12685#0 TGC-TTATGTGGCATTATT-CTCCAATTC----ATCTATTTT--TGAAGCAGAGAG---- 1055
consensus_12685#1 TGTGTTAAGCGCCGCTGCTATTTCAATACTAGTATTGATTTTATCTATACAGAGAGAGCA 539
** *** * * * * * * **** * ** ***** * *******
consensus_12685#3 -GATTGAAAAGGATAGA--TGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGG- 262
consensus_12685#4 -GATTGAAAAGGATAGA--TGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGG- 212
consensus_12685#2 -GATTGAAAAGGATAGA--TGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGG- 502
consensus_12685#0 -GATTGAAAAGGATAGA--TGTTCGCAAGTTCAACCCTAACTGGAACCAAGGAGCTGGG- 1111
consensus_12685#1 CGGTTGTTTATGATAGGATTAGCAGTAGCCTGAGATTGTAGTGGAATAGAGCAGTTGGCA 599
* *** * ***** * * * * * * ***** ** ** ***
consensus_12685#3 -TGTTAA-GATAAGATTGTG-CTA-TTGGCAGTAGT-TCTGGACACGGTTCAAGGCAGCA 317
consensus_12685#4 -TGTTAA-GATAAGATTGTG-CTACTTGGCAGTAGT-TCTGGACACGGT-CAAGTCAGCA 267
consensus_12685#2 -TGTTAA-GATAAGATTGTG-CTACTTGGCAGTAGT-TCTGGACACGGT-CAAGGCAGCA 557
consensus_12685#0 -TGTTAA-GATAAGATTGTG-CTACTTGGCAGTAGT-TCTGGACACGGT-CAAGGCAGCA 1166
consensus_12685#1 CTGTTTATAATCAAACAACGTCTGTTCCATTGTGCTATGTGGAGAACAC-CACGAAATCA 658
**** * ** * * * ** * ** * * **** * ** * * **
consensus_12685#3 ATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGA 377
consensus_12685#4 ATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGA 327
consensus_12685#2 ATTTGCTAGTGAGGATGAACTATATCCCCCAAGCTAAGTTTTTTGCGCAGCAAGCTCCGA 617
consensus_12685#0 ATTTGCTAGTGAGGATGAACTATATCCACCAAGCTAAGTCTTCTGCGCAGCAAGCTCCGA 1226
consensus_12685#1 GCACTCTAGCATTATCGATCTAGTCACAACTAGTCAATTGCAGGGTGAATTGTGTGAAAA 718
**** ** *** * * ** ** * * * * * *
consensus_12685#3 CATGTGAAATACAGTC-TGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAA 436
consensus_12685#4 CATGTGAAATACAGTC-TGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAA 386
consensus_12685#2 CATGTGAAATACAGTC-TGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAA 676
consensus_12685#0 CATGTGAAATACAGTC-TGCCGATGTACCATGGCCATTACAGCTAGTTCAATCGTGAGAA 1285
consensus_12685#1 TGAGTGTGCTGTAATGATACCTCTGTAATGGTGTTGTTGTACTTCCTTTTTAATCTAGCA 778
*** * * * * ** **** * ** * * ** ** *
consensus_12685#3 CTGGAC-CAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCA 495
consensus_12685#4 CTGGAC-CAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGT-CCCA 444
consensus_12685#2 CTGGAC-CAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCA 735
consensus_12685#0 CTGGAC-CAGTCGAACTGAGTATCCGTTTGGAACTTTACGATCTGGAACGAGTGTACCCA 1344
consensus_12685#1 CTGCACATCGTCAATATGATTATTGGGATACTGAAAACAGATCAAGAACAACCTCGGTGA 838
*** ** *** * *** *** * * **** **** * *
consensus_12685#3 TTTGTTACTACGGTCAC-TACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACG 554
consensus_12685#4 TTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACG 504
consensus_12685#2 TTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATAAAAAA-- 793
consensus_12685#0 TTTGTTACTACGGTCACCTACGGGTAATTTTTAACCTGAGATTGATGATGATATAATACG 1404
consensus_12685#1 CAGGTTTTTGATCCTTGATAATATTGCTTACATACCTCAATTCTGTCTTC-CATAGATCA 897
*** * ** * ** **** * * * * * *
consensus_12685#3 GCTCTTTT-GGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 606
consensus_12685#4 GCTCTTTTTGGTCATAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATC 564
consensus_12685#2 ---------------AAAAAAAAAAAAAAAAA---------------------------- 810
consensus_12685#0 GCTCTTTT-GGTCATAAATAACTTAGTTCTTTTCCTCTAAAAAAAATTT----------- 1452
consensus_12685#1 ATTCAGTGAAGTTTAATGAGTTTAACACAGTTGTAGTCTCAGCTGGCTATGATCGCACAG 957
* *
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 GTTGA------------------------------------------------------- 569
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 ------------------------------------------------------------
consensus_12685#1 TGCGTGCATTTGATTGCAGATCACAGAGCAGTGACCCTATTCAGACAATTGATACTTTTC 1017
consensus_12685#3 ------------------------------------------------------------
consensus_12685#4 ------------------------------------------------------------
consensus_12685#2 ------------------------------------------------------------
consensus_12685#0 ------------------------------------------------------------
consensus_12685#1 AAGATAGTGTAATGTCAGTTAATTTAACCAACACAGAAATAATTGCTGGCAGTGTTGATG 1077
consensus_12685#3 ----------------------------------------------------
consensus_12685#4 ----------------------------------------------------
consensus_12685#2 ----------------------------------------------------
consensus_12685#0 ----------------------------------------------------
consensus_12685#1 GTACTATCCGCACATTTGACATTCGCATGGGTAGGGAGACTGTCGACAACTT 1129
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||