These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2186 fasta sequence [AGTTGCCAGTTGATTGGTTCAGCGTGGCTGCGCGCGGCGCGGGGCGGACGGGCAGACGCGATCGACGACAGGCACCGGCTCCGGCTCCATGGCGCGCCTCCTTCTTCTGCTCGTGCTCATCGGCGGCATCTGCGCCGCCGCCGCGGCGAGCTCGCCGCTACTCCCGGCGGCGGAGACGATGCGCGTGAGCTTCGCGGGGAAGTCGGAGTTCAGGACGGTGAACAGGAAGCCGCTGGGTACGTGCCTGGACCCGAGCCCGTACCTGGAGATCAGCGTCAGCACCGGCGGGGCGCCGCTCCCCGACGAGGCGTTCCTCAACGTGACCGTCTCCGGCGTCCGCAGGCCCGACCGCTCCCACTGGCTCGCCATGATCACGCCTTCAAACTCCAGTGTCTTGGGGTGCCCTCTGAACGGTGTCAATTACATCGAGACAGGTGATCTGGCGAGCCTCCCTCTTCTGTGCCACTACCCTGTCAAGGCCCAGTACCTGACAAGCGACCCGGGCTACCTGGGCTGCAAGGCCTCGGCGTGCCAGAAGCGCCGCGCGTCCGGCACCTGCAAGGTCCGGACCTGCGCCGCCACGCTGGCGTTCCACGTCATCAACTTCCGCACCGACGTCGAGTTCGTCCTCTTCTCCGGCGGCTTCGCGACGCCGTGCGTCCTCAAGCGCTCCGGTGCGCTCCCGTTCGCCAACCCCGCCAAGCCGCTCCACGGCCACCTCTCCAGCGTCGACTCCAAGGCCACCTCGATGAGGCTTACGTGGGTGAGCGGAGACGCGAGGCCGCAGCAGGTTCAGTAC-GGGACGGGCAAGACTGCTACCTCTGTCGCCACGACATTCACTCATAAGGACATGTGCAGCATCGCCGTGCTGCCGAGTCCTGCGAAGGACTTCGGGTGGCATGATCCGGGTTACATCCATTCGGCACTCATGACCGGTCTCCAGCCATCTCAGTCCTACAATTACCGTTACGGAAGTGATTCCGTGGGTTGGAGTAACACAACCGAATTCAGAACCCCACCAGCTGCAGGTTCAGGCGAGCTGTCCTTCGTGATCTTTGGTGATATGGGGAAGGCTCCACTGGACCCATCAGTGGAACACTACATTCAGCCTGGATCGACCTCCGTGGCCAAAGCAGTAGCT-GCAGAGATGCAAACCGGAAAGGTCGACTCGATCTTCCACATCGGAGACATCAGCTACGCCACGGGCTTCCTTGTCGAATGGGATTTCTTCCTTCACCTCATCACGCCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAACCACGAGAGAGACTATGCAGGATCTGGATCGGTATATCCGACGCCGGATTCAGGCGGCGAATGTGGAGTCCCCTACGAGTCCTACTTCCCCATGCCTGCTTCCGGTAGGGACAAACCATGGTATTCGATCGAGCAAGGGAGCGTTCACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAATACAATTGGATGGAAATGGATTTGTCAT-CGGTTGATAGATC-AAGAACACCATGGGTGATCTTCATTGGGCATAGACCAATGTATTCATCCAGCAGCGGTATTCCGCCCAGCGTTGATCCGAACTTCGTTTCCTCTGTTGAGCCACTCTTGCTTAACCA-CAAGGTCGATTTGGTCTTCTTTGGCCATGTACACAACTACGAGAGAACGTGTGCGGTATACCA-GGGCAATTGCAAAGGCATGCCAAAGAAGGACGCAAAAGGAGTTGATACCTACGATAACAGCAACTACGCCGCACCTGTTCATGCCGTTGTTGGAGCAGGGGGGTTCAACTTGGATGGCTTCCCTAAGATTGGTCTGCATAGCTGGAGCTTATCAAGGATTTCAGAGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAAACAGTAGCTACTTTTTTTTATTTGTTAGTATATATAGCTAGGTACGCTGTAAATAGATGCTGAATTACACACATAAATGCTATAGACTATCAGGCTGTGTACGCGGCTACAATAAAATTAATACTATCATTTTTCTCCCTGATAGTAAAATTT-----AAAAAAAAAAAAAAA] [+] EMBL AK066643 [AGTTGCCAGTTGATTGGTTCAGCGTGGCTGCGCGCGGCGCGGGGCGGACGGGCAGACGCGATCGACGACAGGCACCGGCTCCGGCTCCATGGCGCGCCTCCTTCTTCTGCTCGTGCTCATCGGCGGCATCTGCGCCGCCGCCGCGGCGAGCTCGCCGCTACTCCCGGCGGCGGAGACGATGCGCGTGAGCTTCGCGGGGAAGTCGGAGTTCAGGACGGTGAACAGGAAGCCGCTGGGTACGTGCCTGGACCCGAGCCCGTACCTGGAGATCAGCGTCAGCACCGGCGGGGCGCCGCTCCCCGACGAGGCGTTCCTCAACGTGACCGTCTCCGGCGTCCGCAGGCCCGACCGCTCCCACTGGCTCGCCATGATCACGCCTTCAAACTCCAGTGTCTTGGGGTGCCCTCTGAACGGTGTCAATTACATCGAGACAGGTGATCTGGCGAGCCTCCCTCTTCTGTGCCACTACCCTGTCAAGGCCCAGTACCTGACAAGCGACCCGGGCTACCTGGGCTGCAAGGCCTCGGCGTGCCAGAAGCGCCGCGCGTCCGGCACCTGCAAGGTCCGGACCTGCGCCGCCACGCTGGCGTTCCACGTCATCAACTTCCGCACCGACGTCGAGTTCGTCCTCTTCTCCGGCGGCTTCGCGACGCCGTGCGTCCTCAAGCGCTCCGGTGCGCTCCCGTTCGCCAACCCCGCCAAGCCGCTCCACGGCCACCTCTCCAGCGTCGACTCCAAGGCCACCTCGATGAGGCTTACGTGGGTGAGCGGAGACGCGAGGCCGCAGCAGGTTCAGTAC GGGACGGGCAAGACTGCTACCTCTGTCGCCACGACATTCACTCATAAGGACATGTGCAGCATCGCCGTGCTGCCGAGTCCTGCGAAGGACTTCGGGTGGCATGATCCGGGTTACATCCATTCGGCACTCATGACCGGTCTCCAGCCATCTCAGTCCTACAATTACCGTTACGGAAGTGATTCCGTGGGTTGGAGTAACACAACCGAATTCAGAACCCCACCAGCTGCAGGTTCAGGCGAGCTGTCCTTCGTGATCTTTGGTGATATGGGGAAGGCTCCACTGGACCCATCAGTGGAACACTACATTCAGCCTGGATCGACCTCCGTGGCCAAAGCAGTAGCT GCAGAGATGCAAACCGGAAAGGTCGACTCGATCTTCCACATCGGAGACATCAGCTACGCCACGGGCTTCCTTGTCGAATGGGATTTCTTCCTTCACCTCATCACGCCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAACCACGAGAGAGACTATGCAGGATCTGGATCGGTATATCCGACGCCGGATTCAGGCGGCGAATGTGGAGTCCCCTACGAGTCCTACTTCCCCATGCCTGCTTCCGGTAGGGACAAACCATGGTATTCGATCGAGCAAGGGAGCGTTCACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAATACAATTGGATGGAAATGGATTTGTCAT CGGTTGATAGATC AAGAACACCATGGGTGATCTTCATTGGGCATAGACCAATGTATTCATCCAGCAGCGGTATTCCGCCCAGCGTTGATCCGAACTTCGTTTCCTCTGTTGAGCCACTCTTGCTTAACCA CAAGGTCGATTTGGTCTTCTTTGGCCATGTACACAACTACGAGAGAACGTGTGCGGTATACCA GGGCAATTGCAAAGGCATGCCAAAGAAGGACGCAAAAGGAGTTGATACCTACGATAACAGCAACTACGCCGCACCTGTTCATGCCGTTGTTGGAGCAGGGGGGTTCAACTTGGATGGCTTCCCTAAGATTGGTCTGCATAGCTGGAGCTTATCAAGGATTTCAGAGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAAACAGTAGCTACTTTTTTTTATTTGTTAGTATATATAGCTAGGTACGCTGTAAATAGATGCTGAATTACACACATAAATGCTATAGACTATCAGGCTGTGTACGCGGCTACAATAAAATTAATACTATCATT ] [+] EMBL CB664560 [ gtCACCTCTCCAGCGTCCACTCCAAGGCCACCTCTATGACGCTTACATGGGTGAGCGGACACGCAAGGCCACACCATGTTCACTACTGGGACGGGCAAGACTGCTACCTCTGTCGCCACGACATTCACTCATAAGGACATGTGCAGCATCACCGTGCTGCCGAGTCCTGCGAAGGACTTCGGGTGGCATGATCCGGGTTACATCCATTCGGCACTCATGACCGGTCTCCAGCCATCTCAGTCCTACAATTACCGTTACGGAAGTGATTCCGTGGGTTGGAGTAACACAACCGAATTCAGAACCCCACCAGCTGCAGGTTCAGGCGAGCTGTCCTTCG ] [+] EMBL AU056108 [ GGCCGCAGCAGGTTCAGTAC GGGACGGGCAAGACTGCTACCTCTGTCGCCACGACATTCACTCATAAGGACATGTGCAGCATCGCCGTGCTGCCGAGTCCTGCGAAGGACTTCGGGTGGCATGATCCGGGTTACATCCATTCGGCACTCATGACCGGTCTCCAGCCATCTCAGTCCTACAATTACCGTTACGGAAGTGATTCCGTGGGTTGGAGTAACACAACCGAATTCAGAACCCCACCAGCTGCAGGTTCAGGCGAGCTGTCCTTCGTGATCTTTGGTGATATGGGGAAGGCTCCACTGGACCCATCAGTGGAACACTACATTCAGCCTGGATCGACCTCCGTGGCCAAAGCAGTAGCTGGCAGAGATGCAAACCGGAAAGGTCGACTCGATCTTCCACATCGGAGACATCAGCTACGCCACGGGCTTCCTTGTCGAATGGGATTTCTTCCTTCACCTCATCANGCCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAANCACGAGAGAGACTATGCAGGATCTGGATCGGTATATCCGACGCCGGATTCAGGCGGCGAATGTGG ] [+] EMBL CB677508 [ GTTACATCCATTCGGCACTCATGACCGGTCTCCAGCCATCTCAGTCCTACAATTACCGTTACGGAAGTGATTCCGTGGGTTGGAGTAACACAACCGAATTCAGAACCCCACCAGCTGCAGGTTCAGGCGAGCTGTCCTTCGTGATCTTTGGTGATATGGGGAAGGCTCCACTGGACCCATCAGTGGAACACTACATTCAGCCTGGATCGACCTCCGTGGCCAAAGCAGTAGCT GCAGAGATGCAAACCGGAAAGGTCGACTCGATCTTCCACATCGGAGACATCAGCTACGCCACGGGCTTCCTTGTCGAATGGGATTTCTTCCTTCACCTCATCACGCCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAACCACGAGAGAGACTATGCAGGATCTGGATCGGTATATCCGACGCCGGATTCAGGCGGCGAATGTGGAGTCCCCTACGAGTCCTACTTCCCCATGCCTGCTTCCGGTAGGGACAAACCATGGTATTCGATCGAGCAAGGGAGCGTTCACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAATACAATTGGATGGAAATGGATTTGTCAT CGGTTGATAGATC AAGAACACCATGGGTGATCTTCATTGGGCATAGACCAATGTATTCATCCAGCAGCGGTATTCCGCCCAGCGTTGATCCGAACTTCGTTTCCTCTGTTGAGCCACTCTTGCTTAACCA CAAGGTCGATTTGGTCTTCTTTGGCCATGTACACAACTACGAGAGAACGTGTGCGGTATACCA GGGCAATTGCAAAGGCATGCCAAAGAAGGACGCCAAAGG ] [-] EMBL CB664559 [ GCGAATGTGGAGTCCCCTACGAGTCGTACTTCCCCATGCCTGCTTCCGGTAGGGACAAACCATGGTATTCGATCGAGCAAGGGAGCGTTCACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAATACAATTGGATGGAAATGGATTTGTCAT CGGTTGATAGATC AAGAACACCATGGGTGATCTTCATTGGGCATAGACCAATGTATTCATCCAGCAGCGGTATTCCGCCCAGCGTTGATCCGAACTTCGTTTCCTCTGTTGAGCCACTCTTGCTTAACCA CAAGGTCGATTTGGTCTTCTTTGGCCATGTACACAACTACGAGAGAACGTGTGCGGTATACCA GGGCAATTGCAAAGGCATGCCAAAGAAGGACGCAAAAGGAGTTGATACCTACGATAACAGCAACTACGCCGCACCTGTTCATGCCGTTGTTGGAGCAGGGGGGTTCAACTTGGATGGCTTCCCTAAGATTGGTCTGCATAGCTGGAGCTTATCAAGGATTTCAGAGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAAACAGTAGCTACTTTTTTTTATTTGTTAGTATATATAGCTAGGTACGCTGTAAATAGATGCTGAATTACACACATAAATGCTATAGACTATCAGGCTGTGTACGCGGCTACAATAAAATTAATACTATCATTTTTCTCCCTGATA ] [-] EMBL CA759874 [ GGA TTGTCCTCCGGTTGATAGGTCAAAGACCCCCATGGGTGATCTCCATGGGGCATAGACCGAGGTAATTATCCAGGAGCGGTATTCCCCCCAGCGTTGATCCGAGCTTCGTTCCCTCTGATGAGCCACTCCTGCTTAACCA CAAGGTCGATTTGGTCTTCTTGGGCCATGTACACAACTCCGAGAGAACGTGTGCGGTATACCAGGGGCAATTGCAAAGGCATGCCAAAGAAGGACGCAAAAGGAGTTGATACCTACGATAACAGCAACTACGCCGCACCTGTTCATGCCGTTGTTGGAGCAGGGGGGTTCAACTTGGATGGCTTCCCTAAGATTGGTTTGCATAGCTGGAGCTTATCAAGGATTTCAGAGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAAACAGTAGCTAC TTTTTTTATTTGTTAGTATATATAGCTAGGTGCGCTATAAATAGATGCTGAATTACACACATAAATGCTATAGACTATCAGGCTGTGTACGCGGCTACAATAAAATTAATACTATCATTTTTCTCCCTGATAGTAACATTTTCTCCAAAAAAAAAAA ] [+] EMBL AU056109 [ cnACTCTTGCTAACCCACCAAGGTCGATTTGGTCTTCTTTGGCCATTTACAC ACTACGAGAGAACGTGTNCGGTATACCA GGGCAATTGCNAAGGCATGCCAAAGAAGGCCNCAAAAGGAGTTGATACCTACGATAACAGCAACTACGCCGCACCTGTTCATGCCGTTGTTGGAGCAGGGGGGTTCAACTTGGATGGCTTCCCTAAGATTGGTCTGCATAGCTGGAGCTTATCAAGGATTTCAGAGTTTGGATATGCCNGGGTACATGCGACGAAAACTGATATGTTGGTTCAGTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAAACAGTAGCTACTTTTTTTTATTTGTTAGTATATATAGCTAGGTACGCTGTAAATAGATGCTGAATTACACACATAAATGCTATAGACTATCAGGCTGTGTACGCGGCTACAATAAAATTAATACTATCATTTTTCTCCCTGATNGTAAAAAAA AAAAAAAAAAAAAA ] [+] EMBL AU056884 [ CGACGAAAACTGATATGTTGGTNCAGTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAAACAGTAGCTACTTTTTTTTATTTGTTAGTATATATAGCTAGGTACGCTGTAAATAGATGCTGAATTACACACATAAATGCTATAGACTATCAGGCTGTGTACGCGGCTACAATAAAATTAATACTATCATTTTTCTCCCTGATNGTAANATTT AAAAAAAAAAAAAAA] consensusID : consensus_12696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [AATGTATTCATCCAGCAGCGGTATTCCGCCCAGCGTTGATCCGAACTTCGTTTCCTCTGTTGAGCCACTCTTGCTTAACCACAAGGTCGATTTGGTCTTCTTTGGCCATGTACACAACTACGAGAGAACGTGTGCGGTATACCAGGGCAATTGCAAAGGCATGCCAAAGAAGGACGCAAAAGGAGTTGATACCTACGATAACAGCAACTACGCCGCACCTGTTCATGCCGTTGTTGGAGCAGGGGGGTTCAACTTGGATGGCTTCCCTAAGATTGGTGTAAGAGTCATATCTACACCTTTGTGTATGTTGTTCTCCTAGGCAATTATAGACATCGTTTCAAACTACATAGTATGGTGGTAACAAATTGATATACTCCTAATTGATAAGAACGCATTAACGCCTGAAAACTCACATACTGTTAAAGTGACAAGCTTGTCTTTCTGTTAAATTGTTCAGCTGCATAGCTGGAGCTTATCAAGGATTTCAGAGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAAACAGTAGCTACTTTTTTTTATTTGTTAGTATATATAGCTAGGTACGCTGTAAATAGATGCTGAATTACACACATAAATGCTATAGACTATCAGGCTGTGTACGCGGCTACAATAAAATTAATACTATCATTTTTCTCCCTGATAGTAAAAAAAAAGA] [-] EMBL CB677509 [AATGTATTCATCCAGCAGCGGTATTCCGCCCAGCGTTGATCCGAACTTCGTTTCCTCTGTTGAGCCACTCTTGCTTAACCACAAGGTCGATTTGGTCTTCTTTGGCCATGTACACAACTACGAGAGAACGTGTGCGGTATACCAGGGCAATTGCAAAGGCATGCCAAAGAAGGACGCAAAAGGAGTTGATACCTACGATAACAGCAACTACGCCGCACCTGTTCATGCCGTTGTTGGAGCAGGGGGGTTCAACTTGGATGGCTTCCCTAAGATTGGTGTAAGAGTCATATCTACACCTTTGTGTATGTTGTTCTCCTAGGCAATTATAGACATCGTTTCAAACTACATAGTATGGTGGTAACAAATTGATATACTCCTAATTGATAAGAACGCATTAACGCCTGAAAACTCACATACTGTTAAAGTGACAAGCTTGTCTTTCTGTTAAATTGTTCAGCTGCATAGCTGGAGCTTATCAAGGATTTCAGAGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAAACAGTAGCTACTTTTTTTTATTTGTTAGTATATATAGCTAGGTACGCTGTAAATAGATGCTGAATTACACACATAAATGCTATAGACTATCAGGCTGTGTACGCGGCTACAATAAAATTAATACTATCATTTTTCTCCCTGATAGTAAAAAAAAAGA] consensusID : consensus_12696#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [AGTAGAGTATAGAGTCCATATAGAAATACAATTAAGAAAAAAAAAGAAATTCGGAATTAAAAATAAGTTAATAGATTAGTTAAACTTTTGACTAAGAAAAAAAATCAAATAATTTATAATATGAAACGAAGGGAGTAGTTGCGATCCAGCCAAAATTTTAACGGGGCCGGGCGTGCAGGCCCAGTACCTGACAAGCGACCCGGGCTACCTGGGCTGCAAGGCCTCGGCGTGCCAGAAGCGCCGCGCGTCCGGCACCTGCAAGGTCCGGACCTGCGCCGCCACGCTGGCGTTCCACGTCATCAACTTCCGCACCGACGTCGAGTTCGTCCTCTTCTCCGGCGGCTTCGCGACGCCGTGCGTCCTCAAGCGCTCCGGTGCGCTCCCGTTCGCCAACCCCGCCAAGCCGCTCCACGGCCACCTCTCCAGCGTCGACTCCAAGGCCACCTCGATGAGGCTTACGTGGGTGAGCGGAGACGCGAGGCCGCAGCAGGTTCAGTACGGGACGGGCAAGACTGCTACCTCTGTCGCCACGACATTCACTCATAAGGACATGTGCAGCATCGCCGTGCTGCCGAGTCCTGCGAAGGACTTCGGGTGGCATGATCCGGGTTACATCCATTCGGCACTCATGACCGGTCTCCAGCCATCTCAGTCCTACAATTACCGTTACGGAAGTGATTCCGTGGGTTGGAGTAACACAACCGAATTCAGAACCCCACCAGCTGCAGGTTCAGGCGAGCTGTCCTTC] [+] EMBL CB664558 [AGTAGAGTATAGAGTCCATATAGAAATACAATTAAGAAAAAAAAAGAAATTCGGAATTAAAAATAAGTTAATAGATTAGTTAAACTTTTGACTAAGAAAAAAAATCAAATAATTTATAATATGAAACGAAGGGAGTAGTTGCGATCCAGCCAAAATTTTAACGGGGCCGGGCGTGCAGGCCCAGTACCTGACAAGCGACCCGGGCTACCTGGGCTGCAAGGCCTCGGCGTGCCAGAAGCGCCGCGCGTCCGGCACCTGCAAGGTCCGGACCTGCGCCGCCACGCTGGCGTTCCACGTCATCAACTTCCGCACCGACGTCGAGTTCGTCCTCTTCTCCGGCGGCTTCGCGACGCCGTGCGTCCTCAAGCGCTCCGGTGCGCTCCCGTTCGCCAACCCCGCCAAGCCGCTCCACGGCCACCTCTCCAGCGTCGACTCCAAGGCCACCTCGATGAGGCTTACGTGGGTGAGCGGAGACGCGAGGCCGCAGCAGGTTCAGTACGGGACGGGCAAGACTGCTACCTCTGTCGCCACGACATTCACTCATAAGGACATGTGCAGCATCGCCGTGCTGCCGAGTCCTGCGAAGGACTTCGGGTGGCATGATCCGGGTTACATCCATTCGGCACTCATGACCGGTCTCCAGCCATCTCAGTCCTACAATTACCGTTACGGAAGTGATTCCGTGGGTTGGAGTAACACAACCGAATTCAGAACCCCACCAGCTGCAGGTTCAGGCGAGCTGTCCTTC] consensusID : consensus_12696#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [AGAATTTCTAGGCCGTGAGAGCGAACGTGGAGGCTTCGTTTTCTATTCCTTTAATAAGTTAATAGATTAGTTAAACTTTTGACTAAGAAAAAAAATCAAATAATTTATAATATGAAACGAAGGGAGTAGTTGCGATCCAGCCAAAATTTTAACGGGGCCGGGCGTGCAGGCCCAGTACCTGACAAGCGACCCGGGCTACCTGGGCTGCAAGGCCTCGGCGTGCCAGAAGCGCCGCGCGTCCGGCACCTGCAAGGTCCGGACCTGCGCCGCCACGCTGGCGTTCCACGTCATCAACTTCCGCACCGACGTCGAGTTCGTCCTCTTCTCCGGCGGCTTCGCGACGCCGTGCGTCCTCAAGCGCTCCGGTGCGCTCCCGTTCGCCAACCCCGCCAAGCCGCTCCACGGCCACCTCTCCAGCGTCGACTCCAAGGCCACCTCGATGAGGCTTACGTGGGTGAGCGGAGACGCGAGGCCGCAGCAGGTTCAGTACGGGACGGGCAAGACTGCTANCTCTGTC] [+] EMBL AU056883 [AGAATTTCTAGGCCGTGAGAGCGAACGTGGAGGCTTCGTTTTCTATTCCTTTAATAAGTTAATAGATTAGTTAAACTTTTGACTAAGAAAAAAAATCAAATAATTTATAATATGAAACGAAGGGAGTAGTTGCGATCCAGCCAAAATTTTAACGGGGCCGGGCGTGCAGGCCCAGTACCTGACAAGCGACCCGGGCTACCTGGGCTGCAAGGCCTCGGCGTGCCAGAAGCGCCGCGCGTCCGGCACCTGCAAGGTCCGGACCTGCGCCGCCACGCTGGCGTTCCACGTCATCAACTTCCGCACCGACGTCGAGTTCGTCCTCTTCTCCGGCGGCTTCGCGACGCCGTGCGTCCTCAAGCGCTCCGGTGCGCTCCCGTTCGCCAACCCCGCCAAGCCGCTCCACGGCCACCTCTCCAGCGTCGACTCCAAGGCCACCTCGATGAGGCTTACGTGGGTGAGCGGAGACGCGAGGCCGCAGCAGGTTCAGTACGGGACGGGCAAGACTGCTANCTCTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 AGTTGCCAGTTGATTGGTTCAGCGTGGCTGCGCGCGGCGCGGGGCGGACGGGCAGACGCG 60 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 ATCGACGACAGGCACCGGCTCCGGCTCCATGGCGCGCCTCCTTCTTCTGCTCGTGCTCAT 120 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 CGGCGGCATCTGCGCCGCCGCCGCGGCGAGCTCGCCGCTACTCCCGGCGGCGGAGACGAT 180 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 GCGCGTGAGCTTCGCGGGGAAGTCGGAGTTCAGGACGGTGAACAGGAAGCCGCTGGGTAC 240 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 GTGCCTGGACCCGAGCCCGTACCTGGAGATCAGCGTCAGCACCGGCGGGGCGCCGCTCCC 300 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 AGTAGAGTATAGAGTCCATATAGAAATACAATTAAGAAAAAAAAAGAAATTCGGAATTAA 60 consensus_12696#3 ---AGAATTTCTAGGCCGTGAGAGCGAAC------GTGGAGGCTTCGTTTTCTATTCCTT 51 consensus_12696#0 CGACGAGGCGTTCCTCAACGTGACCGTCTCCGGCGTCCGCAGGCCCGACCGCTCCCACTG 360 consensus_12696#1 ---AATGTATTCATCCAGCAGCGGTATTCCGCCCAGCGTTGATCCGAACTTCGTTTCCTC 57 * * consensus_12696#2 AAATAAGTTAAT--------------AGATTAGTTAAACTTT---TGACTAAGAAAAAAA 103 consensus_12696#3 TAATAAGTTAAT--------------AGATTAGTTAAACTTT---TGACTAAGAAAAAAA 94 consensus_12696#0 GCTCGCCATGAT--------------CACGCCTTCAAACTCCAG-TGTCTTGGGGTGCCC 405 consensus_12696#1 TGTTGAGCCACTCTTGCTTAACCACAAGGTCGATTTGGTCTTCTTTGGCCATGTACACAA 117 * * ** * * consensus_12696#2 --ATCAAATAATTTATAATATGAAACGAAGGGA--GTAGTTGCGATCCAGCCAAA-ATTT 158 consensus_12696#3 --ATCAAATAATTTATAATATGAAACGAAGGGA--GTAGTTGCGATCCAGCCAAA-ATTT 149 consensus_12696#0 --TCTGAACGGTGTCAATTACATCGAGACAGGT--GATCTGGCGAGCCTCCCTCT-TCTG 460 consensus_12696#1 CTACGAGAGAACGTGTGCGGTATACCAGGGCAATTGCAAAGGCATGCCAAAGAAGGACGC 177 * * * ** ** consensus_12696#2 TAACGGGGCCGG-GCGTGCAGGCCCAGTACCTGACAAGCGACCCGGGCTACCTGGGCTGC 217 consensus_12696#3 TAACGGGGCCGG-GCGTGCAGGCCCAGTACCTGACAAGCGACCCGGGCTACCTGGGCTGC 208 consensus_12696#0 TGCCACTACCC---TGTCAAGGCCCAGTACCTGACAAGCGACCCGGGCTACCTGGGCTGC 517 consensus_12696#1 AAAAGGAGTTGATACCTACGATAACAGCAACTACGCCGCACCTGTTCATGCCGTTGTTGG 237 * *** * ** ** * * ** * ** consensus_12696#2 AAGGCCTCGGCGTGCCAGAAGCGCCGCGCGTCCGGCACCTGCAAGGTCCGGACCTGCGCC 277 consensus_12696#3 AAGGCCTCGGCGTGCCAGAAGCGCCGCGCGTCCGGCACCTGCAAGGTCCGGACCTGCGCC 268 consensus_12696#0 AAGGCCTCGGCGTGCCAGAAGCGCCGCGCGTCCGGCACCTGCAAGGTCCGGACCTGCGCC 577 consensus_12696#1 AGCAGGGGGGTTCAACTTGGATGGCTTCCCTAAGATTGGTGTAAGAGTCATATCTACACC 297 * ** * * * * * * ** *** * * ** * ** consensus_12696#2 GCCACGCTGGCGTTCCACGTCATCAACTTCCGCACCGACGTCGAGTTCGTCCTCTTC-TC 336 consensus_12696#3 GCCACGCTGGCGTTCCACGTCATCAACTTCCGCACCGACGTCGAGTTCGTCCTCTTC-TC 327 consensus_12696#0 GCCACGCTGGCGTTCCACGTCATCAACTTCCGCACCGACGTCGAGTTCGTCCTCTTC-TC 636 consensus_12696#1 TTTGTGTATGTTGTTCTCCTAGGCAATT-----ATAGACATCGTTTCAAACTACATAGTA 352 * * * * * * *** * * *** *** * * * * * consensus_12696#2 CGGCGGCTTCGCGACGCCGTGCGTCCTCAAGCGCTCCGGTGCGCTCCCGTTCGCCAACCC 396 consensus_12696#3 CGGCGGCTTCGCGACGCCGTGCGTCCTCAAGCGCTCCGGTGCGCTCCCGTTCGCCAACCC 387 consensus_12696#0 CGGCGGCTTCGCGACGCCGTGCGTCCTCAAGCGCTCCGGTGCGCTCCCGTTCGCCAACCC 696 consensus_12696#1 TGGTGGTAACAAATTGATATAC-TCCTAATTGATAAGAACGCATTAACGCCTGAAAACTC 411 ** ** * * * * **** * ** * ** * *** * consensus_12696#2 CGCCAAGCCGCT----CCACGGCCACCTCTCCAGCGTCGACTCCAAGGCCACCTCGATGA 452 consensus_12696#3 CGCCAAGCCGCT----CCACGGCCACCTCTCCAGCGTCGACTCCAAGGCCACCTCGATGA 443 consensus_12696#0 CGCCAAGCCGCT----CCACGGCCACCTCTCCAGCGTCGACTCCAAGGCCACCTCGATGA 752 consensus_12696#1 --ACATACTGTTAAAGTGACAAGCTTGTCTTTCTGTTAAATTGTTCAGCTGCATAGCTGG 469 ** * * * ** * *** * * * ** * * * ** consensus_12696#2 GGCTTA-CGTGGGT----GAGC--GGAGACGCGAGGCCGCAGCAGGTTCAGTACGGGACG 505 consensus_12696#3 GGCTTA-CGTGGGT----GAGC--GGAGACGCGAGGCCGCAGCAGGTTCAGTACGGGACG 496 consensus_12696#0 GGCTTA-CGTGGGT----GAGC--GGAGACGCGAGGCCGCAGCAGGTTCAGTACGGGACG 805 consensus_12696#1 AGCTTATCAAGGATTTCAGAGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATG 529 ***** * ** * *** *** * ** *** ** * * * * * consensus_12696#2 ---GGCAAGACTGCTACCTCTGTCGCCACGACATTC----ACTCATAAGGACATGTGCAG 558 consensus_12696#3 ---GGCAAGACTGCTANCTCTGTC------------------------------------ 517 consensus_12696#0 ---GGCAAGACTGCTACCTCTGTCGCCACGACATTC----ACTCATAAGGACATGTGCAG 858 consensus_12696#1 TTGGTTCAGTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAG 589 * ** ** * *** * consensus_12696#2 CATCGCCGTGCTGCCGAGTCCTGCGAAGGACTTCGGGTGGCATGATCCGGGTTACATCCA 618 consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 CATCGCCGTGCTGCCGAGTCCTGCGAAGGACTTCGGGTGGCATGATCCGGGTTACATCCA 918 consensus_12696#1 GGA-GCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAAACAGTAGCTA 648 consensus_12696#2 TTCGGCACTCATGACCGGTCTCCAGCCATCTCAGTCCTACAATTACCGTTACGGAAGTGA 678 consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 TTCGGCACTCATGACCGGTCTCCAGCCATCTCAGTCCTACAATTACCGTTACGGAAGTGA 978 consensus_12696#1 CTTTTTTTTATTTGTTAGTATATA--TAGCTAGGTACGCTGTAAATAGATGCTGAATTAC 706 consensus_12696#2 TTCCGTGGGTTGGAGTAACACAACCGAATTCAGAACCCCACCAGCTGCAGGTTCAGGCGA 738 consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 TTCCGTGGGTTGGAGTAACACAACCGAATTCAGAACCCCACCAGCTGCAGGTTCAGGCGA 1038 consensus_12696#1 ACACATAAATGCTAT--AGACTATCAGGCTGTGTACGCGGCTACAATAAAATTAATACTA 764 consensus_12696#2 GCTGTCCTTC-------------------------------------------------- 748 consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 GCTGTCCTTCGTGATCTTTGGTGATATGGGGAAGGCTCCACTGGACCCATCAGTGGAACA 1098 consensus_12696#1 TCATTTTTCTCCCTGATAGTAAAAAAAAAGA----------------------------- 795 consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 CTACATTCAGCCTGGATCGACCTCCGTGGCCAAAGCAGTAGCTGCAGAGATGCAAACCGG 1158 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 AAAGGTCGACTCGATCTTCCACATCGGAGACATCAGCTACGCCACGGGCTTCCTTGTCGA 1218 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 ATGGGATTTCTTCCTTCACCTCATCACGCCGCTCGCGTCGCAGGTGTCCTACATGACCGC 1278 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 CATTGGTAACCACGAGAGAGACTATGCAGGATCTGGATCGGTATATCCGACGCCGGATTC 1338 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 AGGCGGCGAATGTGGAGTCCCCTACGAGTCCTACTTCCCCATGCCTGCTTCCGGTAGGGA 1398 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 CAAACCATGGTATTCGATCGAGCAAGGGAGCGTTCACTTCGTTGTGATGTCCACCGAGCA 1458 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 CGAGTGGTCAGAGAAGTCAGACCAATACAATTGGATGGAAATGGATTTGTCATCGGTTGA 1518 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 TAGATCAAGAACACCATGGGTGATCTTCATTGGGCATAGACCAATGTATTCATCCAGCAG 1578 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 CGGTATTCCGCCCAGCGTTGATCCGAACTTCGTTTCCTCTGTTGAGCCACTCTTGCTTAA 1638 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 CCACAAGGTCGATTTGGTCTTCTTTGGCCATGTACACAACTACGAGAGAACGTGTGCGGT 1698 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 ATACCAGGGCAATTGCAAAGGCATGCCAAAGAAGGACGCAAAAGGAGTTGATACCTACGA 1758 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 TAACAGCAACTACGCCGCACCTGTTCATGCCGTTGTTGGAGCAGGGGGGTTCAACTTGGA 1818 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 TGGCTTCCCTAAGATTGGTCTGCATAGCTGGAGCTTATCAAGGATTTCAGAGTTTGGATA 1878 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 TGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGTTTGTAAACTCGAACACGTC 1938 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 GGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAA 1998 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 CTTGATATTCACAAGGAGAAACAGTAGCTACTTTTTTTTATTTGTTAGTATATATAGCTA 2058 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 GGTACGCTGTAAATAGATGCTGAATTACACACATAAATGCTATAGACTATCAGGCTGTGT 2118 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 ------------------------------------------------------------ consensus_12696#3 ------------------------------------------------------------ consensus_12696#0 ACGCGGCTACAATAAAATTAATACTATCATTTTTCTCCCTGATAGTAAAATTTAAAAAAA 2178 consensus_12696#1 ------------------------------------------------------------ consensus_12696#2 -------- consensus_12696#3 -------- consensus_12696#0 AAAAAAAA 2186 consensus_12696#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||