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Oryza sativa
cluster # 12721 cluster # 12721       Sequences # 11       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12721#0 length = 1448 sequences # 6  
consensus_12721#1 length = 802 sequences # 1  
consensus_12721#2 length = 387 sequences # 1  
consensus_12721#3 length = 333 sequences # 1  
consensus_12721#4 length = 303 sequences # 2  

consensusID : consensus_12721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1448
fasta sequence
                              [GTCAAAGCGAGAGCTCCGTATCACCGGCCTCTTTCCCTTCCCTTCCCCTCCGATCCAATCCCCCCTTCTCCTCCTCGCGGCGCTCGCTGAGCATGGCGGCGGAGGGGGAGGCCAAGAAGGACAGCGCCAGCAACCCTCCCGGGGGAGGAGGCGGCGGAGGTGGAGGGGAGGAGGAGGAGGATAGCAGCCTGGCTGTCGGGGAGGCGGCGGTCGGGGTGGGCGAGGCTGGTGGAGGAGGAGGAGGAGGGGAGAAGGCGGATCGAGAGGAGGAGGAGGGGAAGGAGGATGTGGAGGAGGGCGGCGTGTGTAAGGATCTGGTGCTCGTCGAGGACGCCGTCCCCGTCGAGGATCCGGAGGAAGCCGCAGCAACTGCAGCACTTCAGGAAGAAATGAAAGCGCTCGTTGAATCCGTCCCAGTTGGTGCTGGGGCGGCATTCACCGCGATGCAACTACAGGAGCTTGAGCAGCAATCTCGTGTCTACCAGTATATGGCTGCCCGTGTGCCTGTGCCTACTCATCTCGTCTTCCCAATATGGAAGAGTGTTACTGGTGCATCTTCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACACTCTGCTTGGACTTTGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGATGGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATGAGAAATATTGCGAACGCCATATGCACCGTGGCCGCAAGCGTCCTGTACAGCTTGTTGTCGAGGATGACGAGCCTGATTCTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAGAAGACTGATGACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAATTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCAAGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTGAAATTTTCAGTTTAGGTGTATAGTTTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGACTGACAATATCGCATTGTGACTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTATTTGTTGTGTATCATTTTATATGGCCTGCACAATTGTGTGATTTTGTCAGTTGCATAACATGTGGAAGATCCATAATTTTATGCACTATGGAGATTCAATTACCTTCCTGAATGTCTGAGCTTCGACATGTTATTGGTTATTGTAACTTAAAAGCAACCTGAGATTCAATGTGAAAGGGTTTTAGATTCCAGCTTCTGAGGTGTGATTTCAAAAAAAAGA]

[+] EMBL CB674768             [GTCAAAGCGAGAGCTCCGTATCACCGGCCTCTTTCCCTTCCCTTCCCCTCCGATCCAATCCCCCCTTCTCCTCCTCGCGGCGCTCGCTGAGCATGGCGGCGGAGGGGGAGGCCAAGAAGGACAGCGCCAGCAACCCTCCCGGGGGAGGAGGCGGCGGAGGTGGAGGGGAGGAGGAGGAGGATAGCAGCCTGGCTGTCGGGGAGGCGGCGGTCGGGGTGGGCGAGGCTGGTGGAGGAGGAGGAGGAGGGGAGAAGGCGGATCGAGAGGAGGAGGAGGGGAAGGAGGATGTGGAGGAGGGCGGCGTGTGTAAGGATCTGGTGCTCGTCGAGGACGCCGTCCCCGTCGAGGATCCGGAGGAAGCCGCAGCAACTGCAGCACTTCAGGAAGAAATGAAAGCGCTCGTTGAATCCGTCCCAGTTGGTGCTGGGGCGGCATTCACCGCGATGCAACTACAGGAGCTTGAGCAGCAATCTCGTGTCTACCAGTATATGGCTGCCCGTGTGCCTGTGCCTACTCATCTCGTCTTCCCAATATGGAAGAGTGTTACTGGTGCATCTTCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACACTCTGCTTGGACTTTGGAAAGAACCCAGAACCATAACCTGCGAGGTGCCGGCGAACTGATGGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATGAGAAATATTGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK066400             [                 GTATCACCGGCCTCTTTCCCTTCCCTTCCCCTCCGATCCAATCCCCCCTTCTCCTCCTCGCGGCGCTCGCTGAGCATGGCGGCGGAGGGGGAGGCCAAGAAGGACAGCGCCAGCAACCCTCCCGGGGGAGGAGGCGGCGGAGGTGGAGGGGAGGAGGAGGAGGATAGCAGCCTGGCTGTCGGGGAGGCGGCGGTCGGGGTGGGCGAGGCTGGTGGAGGAGGAGGAGGAGGGGAGAAGGCGGATCGAGAGGAGGAGGAGGGGAAGGAGGATGTGGAGGAGGGCGGCGTGTGTAAGGATCTGGTGCTCGTCGAGGACGCCGTCCCCGTCGAGGATCCGGAGGAAGCCGCAGCAACTGCAGCACTTCAGGAAGAAATGAAAGCGCTCGTTGAATCCGTCCCAGTTGGTGCTGGGGCGGCATTCACCGCGATGCAACTACAGGAGCTTGAGCAGCAATCTCGTGTCTACCAGTATATGGCTGCCCGTGTGCCTGTGCCTACTCATCTCGTCTTCCCAATATGGAAGAGTGTTACTGGTGCATCTTCCGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACACTCTGCTTGGACTTTGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGATGGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATGAGAAATATTGCGAACGCCATATGCACCGTGGCCGCAAGCGTCCTGTACAGCTTGTTGTCGAGGATGACGAGCCTGATTCTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAGAAGACTGATGACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAATTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCAAGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTGAAATTTTCAGTTTAGGTGTATAGTTTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGACTGACAATATCGCATTGTGACTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTATTTGTTGTGTATCATTTTATATGGCCTGCACAATTGTGTGATTTTGTCAGTTGCATAACATGTGGAAGATCCATAATTTTATGCACTATGGAGATTCAATTACCTTCCTGAATGTCTGAGCTTCGACATGTTATTGGTTATTGTAACTTAAAAGCAACCTGAGATTCAATGTGAAAGGGTTTTAGA                                  ]
[+] EMBL CF303104             [                                                                                                                                                                                                                                                                                                                            GGTGCTCGTCGAGGACGCCGTCCCCGTCGAGGATCCGGAGGAAGCCGCAGCAACTGCAGCACTTCAGGAAGAAATGAAAGCGCTCGTTGAATCCGTCCCAGTTGGTGCTGGGGCGGCATTCACCGCGATGCAACTACAGGAGCTTGAGCAGCAATCTCGTGTCTACCAGTATATGGCTGCCCGTGTGCCTGTGCCTACTCATCTCGTCTTCCCAATATGGAAGAGTGTTACTGGTGCATCTTCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACACTCTGCTTGGACTTTGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGATGGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATGAGAAATATTGCGAACGCCATATGCACCGTGGCCGCAAGCGTCCTGTACAGCTTGTTGTCGAGGATGACGAGCCTGATTCTACCTCAGGGTCGAAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB664657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAAGAGTGTTACTGGTGCATCTTCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACACTCTGCTTGGACTTTGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGATGGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATGAGAAATATTGCGAACGCCATATGCACCGTGGCCGCAAGCGTCCTGTACAGCTTGTTGTCGAGGATGACGAGCCTGATTCTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAGAAGACTGATGACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAATTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCAAGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTGAAATTTTCAGTTTAGGTGTATAGTTTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGACTGACAATATCGCATTGTGACTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATATGAAGCTATTTGTTGTGTATCATTTTATATGGCCTGCACAATTGCGTGATTTTGTCAGTCGCATACCATGTGGAAGATCCATAATTTTATGCACTATGGAGATTCAAT                                                                                                                        ]
[+] EMBL AU174496             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GACTTTGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGATGGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATGAGAAATATTGCGAACGCCATATGCACCGTGGCCGCAAGCGTCCTGTACAGCTTGTTGTCGAGGATGACGAGCCTGATTCTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAGAAGACTGATGACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAATTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCAAGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB674769             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             actgGGGAGGTGCCGGCGAACTGATGGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATGAGAAATATTGCGAACGCCATATGCACCGTGGCCGCAAGCGTCCTGTACAGCTTGTTGTCGAGGATGACGAGCCTGATTCTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAGAAGACTGATGACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAATTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCAAGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTGAAATTTTCAGTTTAGGTGTATAGTTTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGACTGACAATATCGCATTGTGACTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTATTTGTTGTGTATCATTTTATATGGCCTGCACAATTGTGTGATTTTGTCAGTTGCATAACATGTGGAAGATCCATAATTTTATGCACTATGGAGATTCAATTACCTTCCTGAATGTCTGAGCTTCGACATGTTATTGGTTATTGTAACTTAAAAGCAACCTGAGATTCAATGTGAAAGGGTTTTAGATTCCAGCTTCTGAGGTGTGATTTCAAAAAAAAGA]


>consensus_12721#0 GTCAAAGCGAGAGCTCCGTATCACCGGCCTCTTTCCCTTCCCTTCCCCTCCGATCCAATC CCCCCTTCTCCTCCTCGCGGCGCTCGCTGAGCATGGCGGCGGAGGGGGAGGCCAAGAAGG ACAGCGCCAGCAACCCTCCCGGGGGAGGAGGCGGCGGAGGTGGAGGGGAGGAGGAGGAGG ATAGCAGCCTGGCTGTCGGGGAGGCGGCGGTCGGGGTGGGCGAGGCTGGTGGAGGAGGAG GAGGAGGGGAGAAGGCGGATCGAGAGGAGGAGGAGGGGAAGGAGGATGTGGAGGAGGGCG GCGTGTGTAAGGATCTGGTGCTCGTCGAGGACGCCGTCCCCGTCGAGGATCCGGAGGAAG CCGCAGCAACTGCAGCACTTCAGGAAGAAATGAAAGCGCTCGTTGAATCCGTCCCAGTTG GTGCTGGGGCGGCATTCACCGCGATGCAACTACAGGAGCTTGAGCAGCAATCTCGTGTCT ACCAGTATATGGCTGCCCGTGTGCCTGTGCCTACTCATCTCGTCTTCCCAATATGGAAGA GTGTTACTGGTGCATCTTCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAA CACTCTGCTTGGACTTTGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTG ATGGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATGAGAAATATTGCGAACGCC ATATGCACCGTGGCCGCAAGCGTCCTGTACAGCTTGTTGTCGAGGATGACGAGCCTGATT CTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAGAAGACTGATG ACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACAT GATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAATTAGAGTTCG CTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCAAG AAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTGAAATTTTCAG TTTAGGTGTATAGTTTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGC ATTATTGGATAAATCCTCTCTGACTGACAATATCGCATTGTGACTCAAGAAGCCGATGGA AGGATCTGCGAGACTAGATACGAAGCTATTTGTTGTGTATCATTTTATATGGCCTGCACA ATTGTGTGATTTTGTCAGTTGCATAACATGTGGAAGATCCATAATTTTATGCACTATGGA GATTCAATTACCTTCCTGAATGTCTGAGCTTCGACATGTTATTGGTTATTGTAACTTAAA AGCAACCTGAGATTCAATGTGAAAGGGTTTTAGATTCCAGCTTCTGAGGTGTGATTTCAA AAAAAAGA



consensusID : consensus_12721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 802
fasta sequence
                              [GAGCCTGGTTCTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAGAAGACTGATGACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAATTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCAAGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTGAAATTTTCAGTTTAGGTGTATAGTTTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGACTGACAATATCGCATTGTGACTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA757636             [GAGCCTGGTTCTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAGAAGACTGATGACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAATTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCAAGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTGAAATTTTCAGTTTAGGTGTATAGTTTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGACTGACAATATCGCATTGTGACTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]


>consensus_12721#1 GAGCCTGGTTCTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAG AAGACTGATGACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTG GAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAA TTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTC ATCAAGCAAGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTG AAATTTTCAGTTTAGGTGTATAGTTTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCA GATGAGCGGCATTATTGGATAAATCCTCTCTGACTGACAATATCGCATTGTGACTCAAGA AGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNN



consensusID : consensus_12721#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence
                              [TTGAGCTGTCNCTGAAATTTGTCAGTGTTAGGTGTATAGTGTGTGATTTAGCTNTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGAGCTGACAATATCGCATTGGTGACCTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTATTTGTTGTGTATCATGTTTATATGGCCTGCACANATTGTGTGATTTTGTCAGTTGCATAACATGTGGAAGATCCATAATTTTATGCACTATGGAGATTCATTACCTGTCCTTAATGTCTGAGCTTCGACATGTTATTGGTTATTGTAACTTAAAAGCAACCTGAGATTCAAATGTGAAAGGGTTTTAGATTCCAGCTAAAAAAAAAA]

[+] EMBL BM421322             [TTGAGCTGTCNCTGAAATTTGTCAGTGTTAGGTGTATAGTGTGTGATTTAGCTNTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGAGCTGACAATATCGCATTGGTGACCTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTATTTGTTGTGTATCATGTTTATATGGCCTGCACANATTGTGTGATTTTGTCAGTTGCATAACATGTGGAAGATCCATAATTTTATGCACTATGGAGATTCATTACCTGTCCTTAATGTCTGAGCTTCGACATGTTATTGGTTATTGTAACTTAAAAGCAACCTGAGATTCAAATGTGAAAGGGTTTTAGATTCCAGCTAAAAAAAAAA]


>consensus_12721#2 TTGAGCTGTCNCTGAAATTTGTCAGTGTTAGGTGTATAGTGTGTGATTTAGCTNTTGCCG TGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGAGCTGACAA TATCGCATTGGTGACCTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTA TTTGTTGTGTATCATGTTTATATGGCCTGCACANATTGTGTGATTTTGTCAGTTGCATAA CATGTGGAAGATCCATAATTTTATGCACTATGGAGATTCATTACCTGTCCTTAATGTCTG AGCTTCGACATGTTATTGGTTATTGTAACTTAAAAGCAACCTGAGATTCAAATGTGAAAG GGTTTTAGATTCCAGCTAAAAAAAAAA



consensusID : consensus_12721#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence
                              [NGTACGTGTGGGTTCACCGNAATGCAACTACAGGAGCTTNAGCAGCAATCTCGTGTCTACCAGTATATGGCTGCCCGTTTGCCTGTNCCTACTCATCTCGTCTTCCCAATATGGAAGAGTGTTACTGGTGCATCTNCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACACTCTGCTTGGACTTTGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGATNGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATNAGAAATATTGCGAACGGCATATGCACCGTGGGCCGCANGCGTCCTGTACAGCT]

[+] EMBL OSS1952A             [NGTACGTGTGGGTTCACCGNAATGCAACTACAGGAGCTTNAGCAGCAATCTCGTGTCTACCAGTATATGGCTGCCCGTTTGCCTGTNCCTACTCATCTCGTCTTCCCAATATGGAAGAGTGTTACTGGTGCATCTNCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACACTCTGCTTGGACTTTGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGATNGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATNAGAAATATTGCGAACGGCATATGCACCGTGGGCCGCANGCGTCCTGTACAGCT]


>consensus_12721#3 NGTACGTGTGGGTTCACCGNAATGCAACTACAGGAGCTTNAGCAGCAATCTCGTGTCTAC CAGTATATGGCTGCCCGTTTGCCTGTNCCTACTCATCTCGTCTTCCCAATATGGAAGAGT GTTACTGGTGCATCTNCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACA CTCTGCTTGGACTTTGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGAT NGAAAGAAGTGGCGGTGCTGGAGAAATGCAATTGCAAATNAGAAATATTGCGAACGGCAT ATGCACCGTGGGCCGCANGCGTCCTGTACAGCT



consensusID : consensus_12721#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 303
fasta sequence
                              [AATCCCCCCTTCTCCTCCTCGCGGCGCTCGCTGAGCATGGCGGCGGAGGGGGAGGCCAAGAAGGACAGCGCCAGCAACCCTCCCGGGGGAGGAGGCGGCGGAGGTGGAGGGGAGGAGGAGGAGGATAGCAGCCTGGCTGTCGGGGAGGCGGCGGTCGGGGTGGGCGAGGCTGGTGGAGGAGGAGGAGGAGGGGAGAAGGCGGATCGAGAGGAGGAGGAGGGGAAGGAGGATGTGGAGGAGGGTAGCTGGAGTAATGAGCGGGTGCTTTCCACGGACACTTTTCTTGCTTGAGAGACGGATGAC]

[+] EMBL CB664656             [AATCCCCCCTTCTCCTCCTCGCGGCGCTCGCTGAGCATGGCGGCGGAGGGGGAGGCCAAGAAGGACAGCGCCAGCAACCCTCCCGGGGGAGGAGGCGGCGGAGGTGGAGGGGAGGAGGAGGAGGATAGCAGCCTGGCTGTCGGGGAGGCGGCGGTCGGGGTGGGCGAGGCTGGTGGAGGAGGAGGAGGAGGGGAGAAGGCGGATCGAGAGGAGGAGGAGGGGAAGGAGGATGTGGAGGAGGGTAGCTGGAGTAATGAGCGGGTGCTTTCCACGGACACTTTTCTTGCTTGAGAGACGGATGAC]
[+] EMBL AU174495             [                               TGAGCATGGCGGCGGAGGGGGAGGCCAAGAAGGACAGCGCCA CAACCCTCCCGGGGGAGGAGGCGGCGGAGGTGGAGGGGAGGAGGAGGAGGATAGCAGCCTGGCTGTCGGGGAGGCGGCGGTCGGGGTGGGCGAGGCTGGTGGAGGAGGAGGAGGAGGGGAGAAGGCGGATCGAGAGGAGGAGGAGGGGAAGGAGGATTTNGAGG                                                                 ]


>consensus_12721#4 AATCCCCCCTTCTCCTCCTCGCGGCGCTCGCTGAGCATGGCGGCGGAGGGGGAGGCCAAG AAGGACAGCGCCAGCAACCCTCCCGGGGGAGGAGGCGGCGGAGGTGGAGGGGAGGAGGAG GAGGATAGCAGCCTGGCTGTCGGGGAGGCGGCGGTCGGGGTGGGCGAGGCTGGTGGAGGA GGAGGAGGAGGGGAGAAGGCGGATCGAGAGGAGGAGGAGGGGAAGGAGGATGTGGAGGAG GGTAGCTGGAGTAATGAGCGGGTGCTTTCCACGGACACTTTTCTTGCTTGAGAGACGGAT GAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12721#0      --------------------------------------------GTCAAAGCGAGAGCTC 16
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      GAGCCTGGTTCTACCTCAGGGTCGAAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAG 60
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      CGTATCACCGGCCTCTTTCCCTTCCCTTCCCCTCCGATCCAATCCCCCCTTCTCCTCCTC 76
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      AAGACTGATGACAAGAGCTCAAGTAGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTG 120
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      GCGGCGCTCGCTGAGCATGGCGGCGGAGGGGGAGGCCAAGAAGGACAGCGCCAGCAACCC 136
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      GAGTCTACATGATTGATGCAGCATTTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAA 180
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      TCCCGGGGGAGGAGGCGGCGGAGGTGGAGGGGAGGAGGAGGAGGATAGCAGCCTGGCTGT 196
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      TTAGAGTTCGCTTCTTATTGTAATCCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTC 240
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      CGGGGAGGCGGCGGTCGGGGTGGGCGAGGCTGGTGGAGGAGGAGGAGGAGGGGAGAAGGC 256
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ATCAAGCAAGAAAAGTGTCTGTGGAAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTG 300
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      GGATCGAGAGGAGGAGGAGGGGAAGGAGGATGTGGAGGAGGGCGGCGTGTGTAAGGATCT 316
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      AAATTTTCAGTTTAGGTGTATAGTTTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCA 360
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      GGTGCTCGTCGAGGACGCCGTCCCCGTCGAGGATCCGGAGGAAGCCGCAGCAACTGCAGC 376
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      GATGAGCGGCATTATTGGATAAATCCTCTCTGACTGACAATATCGCATTGTGACTCAAGA 420
consensus_12721#2      ------------------------------------------------------TTGAGC 6
                                                                                   

consensus_12721#0      ACTTCAGGAAGAAATGAAAGCGCTCGTTGAATCCGTCCCAGTTGGTGCTGGGGCGGCATT 436
consensus_12721#3      ---------------------------------------------NGTACGTGTGG-GTT 14
consensus_12721#4      --------------------------------------------------------AATC 4
consensus_12721#1      AGCCGATGGAAGGATCTGCGAG-ACTAGATACGAAGCTNNNNNNNNNNNNNNNNNNNNNN 479
consensus_12721#2      TGTCNCTGAAA---TTTGTCAGTGTTAGGTGTATAGTGTGTGATTTAGCTNTTGCCGTGC 63
                                                                                   

consensus_12721#0      CACCGCGATGCAACTACAGGAGCTTGAGCAGCAATCTCGTGTCTACCAGTATATGGCTGC 496
consensus_12721#3      CACCGNAATGCAACTACAGGAGCTTNAGCAGCAATCTCGTGTCTACCAGTATATGGCTGC 74
consensus_12721#4      CCCCCTTCTCCTCCTCGCGGCGCTCGCTGAGCA---TGGCGGCGG--AGGGGGAGGCCA- 58
consensus_12721#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 539
consensus_12721#2      CCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAATCCTCTCTGAGCTGACAATAT 123
                                                                                   

consensus_12721#0      CCGTGTGCCTGTGCCTACTCATCTCGTCTTCCCAATATGGAAGAGTGTTACTGGTGCATC 556
consensus_12721#3      CCGTTTGCCTGTNCCTACTCATCTCGTCTTCCCAATATGGAAGAGTGTTACTGGTGCATC 134
consensus_12721#4      -AGAAGGACAGCGCCAGC------AACCCTCCCGGGGGAGGAG-GCGGCGGAGGTGGAGG 110
consensus_12721#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 599
consensus_12721#2      CGCATTGGTGACCTCAAGAAGCCGATGGAAGGATCTGCGAGACTAGATACGAAGCTATTT 183
                                                                                   

consensus_12721#0      TTCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACACTCTGCTTGGACTT 616
consensus_12721#3      TNCTGAAGGCGCCCAGAAGTACCCGACATTGATGGGGTTGGCAACACTCTGCTTGGACTT 194
consensus_12721#4      GGAGGAGGAGGAGGATAGCAGCCTGGC--TGTCGGGGA-GGCGGCGGTCGGGGTGGGC-- 165
consensus_12721#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 659
consensus_12721#2      GTTGTGTATCATGTTTATATGGCCTGCACANATTGTGTGATTTTGTCAGTTGCATAACAT 243
                                                                                   

consensus_12721#0      TGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGATGGAAAGAAGTGGCG 676
consensus_12721#3      TGGAAAGAACCCAGAACCAGAACCTGGGAGGTGCCGGCGAACTGATNGAAAGAAGTGGCG 254
consensus_12721#4      ---GAGGCTGGTGGAGGAGGAGGAGGAGGGGAGAAGGCGGATCGAGAGGAGGAGGAGGGG 222
consensus_12721#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 719
consensus_12721#2      GTGGAAGATCCATAATTTTATGCACTATGGAGATTCATTACCTGTCCTTAATGTCTGAGC 303
                                                                                   

consensus_12721#0      GTGCTGGAGAAATGCAATTGCAAATGAGAAATATTGCGAACGCCATATGCACCG-TGG-C 734
consensus_12721#3      GTGCTGGAGAAATGCAATTGCAAATNAGAAATATTGCGAACGGCATATGCACCG-TGGGC 313
consensus_12721#4      AAG--GAGGATGTGGAGGAGGGTAGCTGGAGTAATGAGCGGGTGCTTTCCACGGACACTT 280
consensus_12721#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 779
consensus_12721#2      TTCGACATGTTATTGGTTATTGTAACTTAAAAGCAACCTGAGATTCAAATGTGAAAGGGT 363
                                                                                   

consensus_12721#0      CGCAAGCGTCCTGTACAGCTTGTTGTCGAGGATGACGAGCCTGATTCTACCTCAGGGTCG 794
consensus_12721#3      CGCANGCGTCCTGTACAGCT---------------------------------------- 333
consensus_12721#4      TTCTTGCTTGAGAGACGGATGAC------------------------------------- 303
consensus_12721#1      NNNNNNNNNNNNNNNNNNNNNNN------------------------------------- 802
consensus_12721#2      TTTAGATTCCAGCTAAAAAAAAAA------------------------------------ 387
                                                                                   

consensus_12721#0      AAACCAGCATCTGGCAAGGCCACCGAAGGTGGCAAGAAGACTGATGACAAGAGCTCAAGT 854
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      AGCAAGAAGCTTGCAGTGGCAGCACCAGCTGCTGTGGAGTCTACATGATTGATGCAGCAT 914
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      TTAGGAGCTGCATAAAGAGCATAACTGTGCTGGCAATTAGAGTTCGCTTCTTATTGTAAT 974
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      CCTGAAAAGACTGTAGTCTGGTCTAGCTATAACCTCATCAAGCAAGAAAAGTGTCTGTGG 1034
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      AAAGAAGCCACAAAAACTTTCATTTAGCTGTCACTGAAATTTTCAGTTTAGGTGTATAGT 1094
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      TTGATTTAGCTTTGCCGTGCCCTCTGCCTTCAGGCAGATGAGCGGCATTATTGGATAAAT 1154
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      CCTCTCTGACTGACAATATCGCATTGTGACTCAAGAAGCCGATGGAAGGATCTGCGAGAC 1214
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      TAGATACGAAGCTATTTGTTGTGTATCATTTTATATGGCCTGCACAATTGTGTGATTTTG 1274
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      TCAGTTGCATAACATGTGGAAGATCCATAATTTTATGCACTATGGAGATTCAATTACCTT 1334
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      CCTGAATGTCTGAGCTTCGACATGTTATTGGTTATTGTAACTTAAAAGCAACCTGAGATT 1394
consensus_12721#3      ------------------------------------------------------------
consensus_12721#4      ------------------------------------------------------------
consensus_12721#1      ------------------------------------------------------------
consensus_12721#2      ------------------------------------------------------------
                                                                                   

consensus_12721#0      CAATGTGAAAGGGTTTTAGATTCCAGCTTCTGAGGTGTGATTTCAAAAAAAAGA 1448
consensus_12721#3      ------------------------------------------------------
consensus_12721#4      ------------------------------------------------------
consensus_12721#1      ------------------------------------------------------
consensus_12721#2      ------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)