|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1947 fasta sequence
[CCATTACACCATTCCATTCCAGTGGTAGAAGATCCGAGATCGAGGAGGAGGTGAGGAGAGGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATTGGGTTGCTTGTAATTACCGCCTCTGCTGTCATCCCATCACTACAACCTGCTCCATGCAATGGGAGCTCATGTCCTCCTGCAACAGGGTTTCAGTATTTTGTCTTCTTCACCGCGCTCTACCTTATTTCGGTTGGCACCGGGGGTGTCAAATCAGCATTACTCCCCTTTGGAGCTGACCAGTACAACGATTCAAACCTCGAAGAGAGTAAAAAGAAGCAATCTTTCTTTAGCTTGTTCTTCATTGCTATCAACCTTGGAGTGTTCATTTCGGGCACTGTCGTCGTTTGGATACAGCAAAATGTTGCTTGGTCTCTCGGATTCGGCATCTCCTCAATATGCCTTGTTGTTGCCACAGTTGCCTTTTTGGCAGGAACACCAGTGTACAAGGTCCAGCTTCCCAGTGGAAGCCCACTCAAGAGTGTTGTAATGGTTTTTGTTGCCTCTTTTAAGAAGAGAAAACTGGAGGTTCCTGCCGATAACGCACTCCTGTATGAAGGGGATGATGCTGATTTAAGCAATGGACAATCAGTCAAACTAGCACATACTGATGGTTTCAGGTGGTTAGATAAGGCGGCAGTGGTTTTTGAGGAGGTGGAAGAGATAAATAAGGATGAGGGTGGGGGTGGAGGGTGGCTGCAGTGTTCGGTAACGCAGGTGGAGGAAGTGAAGATTCTGCTGCGGATGCTGCCGATATGGGTGACCAGCGTGCTGTACGCGGCTTCCTTGGGTCAGACGGCCACCACCTTCGTGCAGCAGGGGAATGCCATGAACACCAAGATCGGATCCTTCTCTGTCCCGGCGGCATCCCTCAACTCCGCCGAGGTCATCTTCATGATGATCTGGGTGGTGTTCCAGGACACGGTGGTCGTCCCGATCGCCAGGCGCTACACCGGGAACCCCGCGGGGCTGACGCAGCTGCAGCGGATGGGCGTGGGGCGGTTGCTGGCGGTGCCGGCGCTGGCGGTGGCGGCCGTGCTGGAGACGTGGCGGCTGCGCAGCGTCAGGGACGGCGGCAACCTGAGCATCGCGTGGCAGCTG-CCGCAGTTCGTCATCCTGGCCTGCTCCGACGTCTTCTGCGGCATC-GCTCAGCTGGAATTCTTCTACTCGGAGGCCCCCGTGTCGATGCGGAGCCTCTGCTCGGCCTTCTCCTTCCTGGCGCTCTCGCTGGGCTACTACGTCAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAAGGGCTGGCTCCCCGCCGACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAGCGCCATCAACTTTGTGGTGTACGCCGCCTTTGCCAAGAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCC-AATCAACCATTCTTGTATTATTATTCCACTTGATTCGTTGAGCATGTATATAAACCAAATAAAAAATAAACCAAATAAAGGGCTGAATCCATGCATTAAAAAA]
[+] EMBL AK070527 [CCATTACACCATTCCATTCCAGTGGTAGAAGATCCGAGATCGAGGAGGAGGTGAGGAGAGGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATTGGGTTGCTTGTAATTACCGCCTCTGCTGTCATCCCATCACTACAACCTGCTCCATGCAATGGGAGCTCATGTCCTCCTGCAACAGGGTTTCAGTATTTTGTCTTCTTCACCGCGCTCTACCTTATTTCGGTTGGCACCGGGGGTGTCAAATCAGCATTACTCCCCTTTGGAGCTGACCAGTACAACGATTCAAACCTCGAAGAGAGTAAAAAGAAGCAATCTTTCTTTAGCTTGTTCTTCATTGCTATCAACCTTGGAGTGTTCATTTCGGGCACTGTCGTCGTTTGGATACAGCAAAATGTTGCTTGGTCTCTCGGATTCGGCATCTCCTCAATATGCCTTGTTGTTGCCACAGTTGCCTTTTTGGCAGGAACACCAGTGTACAAGGTCCAGCTTCCCAGTGGAAGCCCACTCAAGAGTGTTGTAATGGTTTTTGTTGCCTCTTTTAAGAAGAGAAAACTGGAGGTTCCTGCCGATAACGCACTCCTGTATGAAGGGGATGATGCTGATTTAAGCAATGGACAATCAGTCAAACTAGCACATACTGATGGTTTCAGGTGGTTAGATAAGGCGGCAGTGGTTTTTGAGGAGGTGGAAGAGATAAATAAGGATGAGGGTGGGGGTGGAGGGTGGCTGCAGTGTTCGGTAACGCAGGTGGAGGAAGTGAAGATTCTGCTGCGGATGCTGCCGATATGGGTGACCAGCGTGCTGTACGCGGCTTCCTTGGGTCAGACGGCCACCACCTTCGTGCAGCAGGGGAATGCCATGAACACCAAGATCGGATCCTTCTCTGTCCCGGCGGCATCCCTCAACTCCGCCGAGGTCATCTTCATGATGATCTGGGTGGTGTTCCAGGACACGGTGGTCGTCCCGATCGCCAGGCGCTACACCGGGAACCCCGCGGGGCTGACGCAGCTGCAGCGGATGGGCGTGGGGCGGTTGCTGGCGGTGCCGGCGCTGGCGGTGGCGGCCGTGCTGGAGACGTGGCGGCTGCGCAGCGTCAGGGACGGCGGCAACCTGAGCATCGCGTGGCAGCTG CCGCAGTTCGTCATCCTGGCCTGCTCCGACGTCTTCTGCGGCATC GCTCAGCTGGAATTCTTCTACTCGGAGGCCCCCGTGTCGATGCGGAGCCTCTGCTCGGCCTTCTCCTTCCTGGCGCTCTCGCTGGGCTACTACGTCAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAAGGGCTGGCTCCCCGCCGACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAGCGCCATCAACTTTGTGGTGTACGCCGCCTTTGCCAAGAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCC AATCAACCATTCTTGTATTATTATTCCACTTGATTCGTTGAGCATGTATATAAACCAAATAAAAAATAAACCAAATAAAGGGCTGAA ]
[+] EMBL AK099219 [CCATTACACCATTCCATTCCAGTGGTAGAAGATCCGAGATCGAGGAGGAGGTGAGGAGAGGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATTGGGTTGCTTGTAATTACCGCCTCTGCTGTCATCCCATCACTACAACCTGCTCCATGCAATGGGAGCTCATGTCCTCCTGCAACAGGGTTTCAGTATTTTGTCTTCTTCACCGCGCTCTACCTTATTTCGGTTGGCACCGGGGGTGTCAAATCAGCATTACTCCCCTTTGGAGCTGACCAGTACAACGATTCAAACCTCGAAGAGAGTAAAAAGAAGCAATCTTTCTTTAGCTTGTTCTTCATTGCTATCAACCTTGGAGTGTTCATTTCGGGCACTGTCGTCGTTTGGATACAGCAAAATGTTGCTTGGTCTCTCGGATTCGGCATCTCCTCAATATGCCTTGTTGTTGCCACAGTTGCCTTTTTGGCAGGAACACCAGTGTACAAGGTCCAGCTTCCCAGTGGAAGCCCACTCAAGAGTGTTGTAATGGTTTTTGTTGCCTCTTTTAAGAAGAGAAAACTGGAGGTTCCTGCCGATAACGCACTCCTGTATGAAGGGGATGATGCTGATTTAAGCAATGGACAATCAGTCAAACTAGCACATACTGATGGTTTCAGGTGGTTAGATAAGGCGGCAGTGGTTTTTGAGGAGGTGGAAGAGATAAATAAGGATGAGGGTGGGGGTGGAGGGTGGCTGCAGTGTTCGGTAACGCAGGTGGAGGAAGTGAAGATTCTGCTGCGGATGCTGCCGATATGGGTGACCAGCGTGCTGTACGCGGCTTCCTTGGGTCAGACGGCCACCACCTTCGTGCAGCAGGGGAATGCCATGAACACCAAGATCGGATCCTTCTCTGTCCCGGCGGCATCCCTCAACTCCGCCGAGGTCATCTTCATGATGATCTGGGTGGTGTTCCAGGACACGGTGGTCGTCCCGATCGCCAGGCGCTACACCGGGAACCCCGCGGGGCTGACGCAGCTGCAGCGGATGGGCGTGGGGCGGTTGCTGGCGGTGCCGGCGCTGGCGGTGGCGGCCGTGCTGGAGACGTGGCGGCTGCGCAGCGTCAGGGACGGCGGCAACCTGAGCATCGCGTGGCAGCTG CCGCAGTTCGTCATCCTGGCCTGCTCCGACGTCTTCTGCGGCATC GCTCAGCTGGAATTCTTCTACTCGGAGGCCCCCGTGTCGATGCGGAGCCTCTGCTCGGCCTTCTCCTTCCTGGCGCTCTCGCTGGGCTACTACGTCAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAAGGGCTGGCTCCCCGCCGACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAGCGCCATCAACTTTGTGGTGTACGCCGCCTTTGCCAAGAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCC AATCAACCATTCTTGTA ]
[+] EMBL AK105726 [ CCATTCCATTCCAGTGGTAGAAGATCCGAGATCGAGGAGGAGGTGAGGAGAGGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATTGGGTTGCTTGTAATTACCGCCTCTGCTGTCATCCCATCACTACAACCTGCTCCATGCAATGGGAGCTCATGTCCTCCTGCAACAGGGTTTCAGTATTTTGTCTTCTTCACCGCGCTCTACCTTATTTCGGTTGGCACCGGGGGTGTCAAATCAGCATTACTCCCCTTTGGAGCTGACCAGTACAACGATTCAAACCTCGAAGAGAGTAAAAAGAAGCAATCTTTCTTTAGCTTGTTCTTCATTGCTATCAACCTTGGAGTGTTCATTTCGGGCACTGTCGTCGTTTGGATACAGCAAAATGTTGCTTGGTCTCTCGGATTCGGCATCTCCTCAATATGCCTTGTTGTTGCCACAGTTGCCTTTTTGGCAGGAACACCAGTGTACAAGGTCCAGCTTCCCAGTGGAAGCCCACTCAAGAGTGTTGTAATGGTTTTTGTTGCCTCTTTTAAGAAGAGAAAACTGGAGGTTCCTGCCGATAACGCACTCCTGTATGAAGGGGATGATGCTGATTTAAGCAATGGACAATCAGTCAAACTAGCACATACTGATGGTTTCAGGTGGTTAGATAAGGCGGCAGTGGTTTTTGAGGAGGTGGAAGAGATAAATAAGGATGAGGGTGGGGGTGGAGGGTGGCTGCAGTGTTCGGTAACGCAGGTGGAGGAAGTGAAGATTCTGCTGCGGGTGCTGCCGATATGGGTGACCAGCGTGCTGTACGCGGCTTCCTTGGGTCAGACGGCCACCACCTTCGTGCAGCAGGGGAATGCCATGAACACCAAGATCGGATCCTTCTCTGTCCCGGCGGCATCCCTCAACTCCGCCGAGGTCATCTTCATGATGATCTGGGTGGTGTTCCAGGACACGGTGGTCGTCCCGATCGCCAGGCGCTACACCGGGAACCCCGCGGGGCTGACGCAGCTGCAGCGGATGGGCGTGGGGCGGTTGCTGGCGGTGCCGGCGCTGGCGGTGGCGGCCGTGCTGGAGACGTGGCGGCTGCGCAGCGTCAGGGACGGCGGCAACCTGAGCATCGCGTGGCAGCTG CCGCAGTTCGTCATCCTGGCCTGCTCCGACGTCTTCTGCGGCATC GCTCAGCTGGAATTCTTCTACTCGGAGGCCCCCGTGTCGATGCGGAGCCTCTGCTCGGCCTTCTCCTTCCTGGCGCTCTCGCTGGGCTACTACGTCAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAAGGGCTGGCTCCCCGCCGACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAGCGCCATCAACTTTGTGGTGTACGCCGCCTTTGCCAAGAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCC AATCAACCATTCTTGTATTATTATTCCACTTGATTCGTTGAGCATGTATATAAACCAAATAAAAAATAAACCAAATAAAGGGCTGAA ]
[+] EMBL AK099267 [ CCAGTGGTAGAAGATCCGAGATCGAGGAGGAGGTGAGGAGAGGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATTGGGTTGCTTGTAATTACCGCCTCTGCTGTCATCCCATCACTACAACCTGCTCCATGCAATGGGAGCTCATGTCCTCCTGCAACAGGGTTTCAGTATTTTGTCTTCTTCACCGCGCTCTACCTTATTTCGGTTGGCACCGGGGGTGTCAAATCAGCATTACTCCCCTTTGGAGCTGACCAGTACAACGATTCAAACCTCGAAGAGAGTAAAAAGAAGCAATCTTTCTTTAGCTTGTTCTTCATTGCTATCAACCTTGGAGTGTTCATTTCGGGCACTGTCGTCGTTTGGATACAGCAAAATGTTGCTTGGTCTCTCGGATTCGGCATCTCCTCAATATGCCTTGTTGTTGCCACAGTTGCCTTTTTGGCAGGAACACCAGTGTACAAGGTCCAGCTTCCCAGTGGAAGCCCACTCAAGAGTGTTGTAATGGTTTTTGTTGCCTCTTTTAAGAAGAGAAAACTGGAGGTTCCTGCCGATAACGCACTCCTGTATGAAGGGGATGATGCTGATTTAAGCAATGGACAATCAGTCAAACTAGCACATACTGATGGTTTCAGGTGGTTAGATAAGGCGGCAGTGGTTTTTGAGGAGGTGGAAGAGATAAATAAGGATGAGGGTGGGGGTGGAGGGTGGCTGCAGTGTTCGGTAACGCAGGTGGAGGAAGTGAAGATTCTGCTGCGGATGCTGCCGATATGGGTGACCAGCGTGCTGTACGCGGCTTCCTTGGGTCAGACGGCCACCACCTTCGTGCAGCAGGGGAATGCCATGAACACCAAGATCGGATCCTTCTCTGTCCCGGCGGCATCCCTCAACTCCGCCGAGGTCATCTTCATGATGATCTGGGTGGTGTTCCAGGACACGGTGGTCGTCCCGATCGCCAGGCGCTACACCGGGAACCCCGCGGGGCTGACGCAGCTGCAGCGGATGGGCGTGGGGCGGTTGCTGGCGGTGCCGGCGCTGGCGGTGGCGGCCGTGCTGGAGACGTGGCGGCTGCGCAGCGTCAGGGACGGCGGCAACCTGAGCATCGCGTGGCAGCTG CCGCAGTTCGTCATCCTGGCCTGCTCCGACGTCTTCTGCGGCATC GCTCAGCTGGAATTCTTCTACTCGGAGGCCCCCGTGTCGATGCGGAGCCTCTGCTCGGCCTTCTCCTTCCTGGCGCTCTCGCTGGGCTACTACGTCAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAAGGGCTGGCTCCCCGCCGACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAGCGCCATCAACTTTGTGGTGTACGCCGCCTTTGCCAAGAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCC AATCAACCATTCTTGTATTATTATTCCACTTGATTCGTTGAGCATGTATATAAACCAAATAAAAAATAAACCAAATAAAGGGCTGAATCCATG ]
[+] EMBL CF326747 [ AGTGTTCGGTAACGCAGGTGGAGGAAGTGAAGATTCTGCTGCGGATGCTGCCGATATGGGTGACCAGCGTGCTGTACGCGGCTTCCTTGGGTCAGACGGCCACCACCTTCGTGCAGCAGGGGAATGCCATGAACACCAATATCGGATCCTTCTCTGTCCCGGCGGCATCCCTCAACTCCGCCGAGGTCATCTTCATGATGATCTGGGTGGTGTTCCAGGACACGGTGGTCGTCCCGATCGCCAGGCGCTACACCGGGAACCCCGCGGGGCTGACGCAGCTGCAGCGGATGGGCGTGGGGCGGTTGCTGGCGGTGCCGGCGCTGGCGGTGGCGGCCGTGCTGGAGACGTGGCGGCTGCGCAGCGTCAGGGACGGCGGCAACCTGAGCATCGCGTGG ]
[+] EMBL BM037999 [ gcGTGCCGCCCGTACT GAGACGT GC GCTGC CAGCGTCAGGGACGNCGCCAACCTGAGCATCGCGTGCCAGCTG CCGCAGTTCGTCATCCTGGCCTGCTCCGACGTCTTCTGCGGCATCAGCTCAGCTGGAATTCTTCTACTCGGAGGCCCCCGTGTCGAT CGGAGCCTCTGCTC GCCTTCTCCTTCCTGGCGCTCTCGCTGGGCTACTACGTCAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAAGGGCTGGCTCCCCGCCGACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAGCGCCATCAACTTTGTGGTGTAC CCGCCTTTGCCAAGAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCC ATCAACCATTCTTGTATTATCATTCCACTTGATTCGTTGAGCATGTATATAAACC AATAAAAAATAAACCCAATAAAGGGCTGAATCCATGCATTAAAAAA]
[+] EMBL BI803598 [ CTGC CAGCGTCCAGGACGCCGCCAACCTGAGCATCGCGTGGCAGCTGCCCGCAGTTCGTCATCCT GCCTGCTCCGACGTCTTCTGCGGCATC GCTCAGCTGGAATTCTTCTACTCGGAGGCCCCCGTGTCGATGCGGAGCCTCTGCTC GCCTTCTCCTTCCTGGCGCTCTCGCTGGGCTACTACGTCAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAA GGCTGGCTCCCCGCCGACCTCAACGACGCCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAGCGCCATCAACTTTGTGGTGTAC CCGCCTTTGCCAAGAATTATACCGTCAAGAGACTC CCGTCCCGCACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCCAAATCAACCATTCTTGTATTATCATTCCACTTGATTCGTTGA CATGTATATAAACC AATAAAAAATCAACC AATAAAGGGCTGAATCCAT CATTAAAAA ]
consensusID : consensus_12734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 539 fasta sequence
[GTGAGGAG-AGGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCTTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGAAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATTGTAAGTGCATCCGCCATGTACTAGTATCGTTTTGTGCATCGTTTAATACTAGCTAGCTAGCTAGTAGTAATTCCTCTCATTTGCATTTGCATGTGTTGTGCTCATGCCATATAAGTATGTACTATCTGAGTTATATATGTCCACAAACAAACAGGGGTTGCT]
[+] EMBL CB096927 [ TGAGGAG AGGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCTTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGAAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATTGTAAGTGCATCCGCCATGTACTAGTATCGTTTTGTGCATCGTTTAATACTAGCTAGCTAGCTAGTAGTAATTCCTCTCATTTGCATTTGCATGTGTTGTGCTCATGCCATATAAGTATGTACTATCTGAGTTATATATGTCCACAAACAAACAGGGGTTG ]
[+] EMBL CA764478 [gaGAGGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCTTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATTGTAAGTGCATCCGCCATGTACTAGTATCGTTTTGTGCATCGTTTAATACTAGCTAGCTAGCTAGTAGTAATTCCTCTCATTTGCATTTGCATGTGTTGTGCTCATGCCATATAAGTATGTACTATCTGAGTTATATACGTCCACAAACAAACAGGGGTTGCT]
consensusID : consensus_12734#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[ATCCCTNGGTGGTCTCCCAATGGTCGCCGGTGGTCAACCACCCACTTCGAACAAGGGTGGGCTCCCCGCCGANCCTCAAACGACGGCCCATTTGGACTAACTAATTTCTGGGTNCTGGACGGGAATCAGCGNCCATCAACTTTTGTGGTGAACGCCGCCTTTTGCCAAAGAAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACTGATNGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCCAATCAACCANTCTTGTATTATTATTCCACTTGATTCGTTGAGCATGTATATAAACC]
[+] EMBL AU176414 [ATCCCTNGGTGGTCTCCCAATGGTCGCCGGTGGTCAACCACCCACTTCGAACAAGGGTGGGCTCCCCGCCGANCCTCAAACGACGGCCCATTTGGACTAACTAATTTCTGGGTNCTGGACGGGAATCAGCGNCCATCAACTTTTGTGGTGAACGCCGCCTTTTGCCAAAGAAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACTGATNGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCCAATCAACCANTCTTGTATTATTATTCCACTTGATTCGTTGAGCATGTATATAAACC]
consensusID : consensus_12734#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[AGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCNNNTTCAACTGGAAGGCTCNTGCTCTTATCTTNGCCTTTGAATTNTTGGAGAGCATTGCCTATGCTGGCATCTCCNTCAACTTGGTCGTTTATNTTGGAACCGTCCTCCATGGAACTACCGCNTCNAACGNAGCCAATGTTGNTACATGGAACGGAACCACTTTTNTTACACCGGNTGCTTNTNTTTAATAAAA]
[+] EMBL AU068484 [AGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCNNNTTCAACTGGAAGGCTCNTGCTCTTATCTTNGCCTTTGAATTNTTGGAGAGCATTGCCTATGCTGGCATCTCCNTCAACTTGGTCGTTTATNTTGGAACCGTCCTCCATGGAACTACCGCNTCNAACGNAGCCAATGTTGNTACATGGAACGGAACCACTTTTNTTACACCGGNTGCTTNTNTTTAATAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12734#1 --------------------------------------------------GTGAGGAGAG 10
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CCATTACACCATTCCATTCCAGTGGTAGAAGATCCGAGATCGAGGAGGAGGTGAGGAGAG 60
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 GAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAG--CGGAGATGCC 68
consensus_12734#3 -----AGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAG--CGGAGATGCC 53
consensus_12734#0 GAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAG--CGGAGATGCC 118
consensus_12734#2 --------------------------ATCCCTNGGTGGTCTCCCAATGGTCGCCGGTGGT 34
* * *** * * * ** * **
consensus_12734#1 CAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCT 128
consensus_12734#3 CAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCNNN 113
consensus_12734#0 CAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAGCCCCCC 178
consensus_12734#2 CAACCACC--CACTTCGA-ACAAGGGTGGGCTCCCCGCCGANCCTCAAACGACGGCCCAT 91
**** ** ** * ** *** * ** * * * ** * * **
consensus_12734#1 TTCAACTGGAAGGCTCCTGC-TCTTATCTTGGCCTTTGAATTCTTGGAGAGC-ATTGCCT 186
consensus_12734#3 TTCAACTGGAAGGCTCNTGC-TCTTATCTTNGCCTTTGAATTNTTGGAGAGC-ATTGCCT 171
consensus_12734#0 TTCAACTGGAAGGCTCCTGC-TCTTATCTTGGCCTTTGAATTCTTGGAGAGC-ATTGCCT 236
consensus_12734#2 TTGGACTAACTAATTTCTGGGTNCTGGACGGGAATCAGCGNCCATCAACTTTTGTGGTGA 151
** *** * ** * * * * * * * * *
consensus_12734#1 ATGCTGGCATCTCCCTCA---ACTTGGTCGTTTATCTTGGAACCGTCCTCCA-TGGAACT 242
consensus_12734#3 ATGCTGGCATCTCCNTCA---ACTTGGTCGTTTATNTTGGAACCGTCCTCCA-TGGAACT 227
consensus_12734#0 ATGCTGGCATCTCCCTCA---ACTTGGTCGTTTATCTTGGAACCGTCCTCCA-TGGAACT 292
consensus_12734#2 ACGCCGCCTTTTGCCAAAGAAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACT 211
* ** * * * * * * * * *** * ****** ** * * ***
consensus_12734#1 -ACCGCCTC--TAACGCAGCCAATGTTGA--TACATGGAACGGAACCACTTTTCTTACAC 297
consensus_12734#3 -ACCGCNTC--NAACGNAGCCAATGTTGN--TACATGGAACGGAACCACTTTTNTTACAC 282
consensus_12734#0 -ACCGCCTC--TAACGCAGCCAATGTTGA--TACATGGAACGGAACCACTTTTCTTACAC 347
consensus_12734#2 GATNGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCCAATCAACCANTCTTGTAT 271
* * ** * * **** ** * ** * * * ** * ** *
consensus_12734#1 CGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGAAAAGTACAAGACCATTGCCATCT 357
consensus_12734#3 CGGNTGCT-----TNTNTTTAATAAAA--------------------------------- 304
consensus_12734#0 CGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCT 407
consensus_12734#2 TATTATTCCA--CTTGATTCGTTGA-GCATGTATATAAACC------------------- 309
** * *
consensus_12734#1 CTACAGTTTTCTATCTTATTGTAAGTGCATCCGCCATGTACTAGTATCGTTTTGTGCATC 417
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CTACAGTTTTCTATCTTATTG-GGTTGCTTGTAATTACCGCCTCTGCTGTCATCCCATCA 466
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 GTTTAATACTAGCTAGCTAGCTAGTAGTAAT-TCCTCTCATTTGCATTTGCATGTGTTGT 476
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CTACAACCTGCTCCATGCAATGGGAGCTCATGTCCTCCTGCAACAGGGTTTCAGTATTTT 526
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 GCTCATGCCATATAAGTATGTACTATCTGAGTTATATATGTCCACAAACAAACAGGGGTT 536
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 GTCTTCTTCACCGCGCTCTACCTTATTTCGGTTG-GCACCGGGGGTGTCAAATCAGCATT 585
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 GCT--------------------------------------------------------- 539
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 ACTCCCCTTTGGAGCTGACCAGTACAACGATTCAAACCTCGAAGAGAGTAAAAAGAAGCA 645
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 ATCTTTCTTTAGCTTGTTCTTCATTGCTATCAACCTTGGAGTGTTCATTTCGGGCACTGT 705
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CGTCGTTTGGATACAGCAAAATGTTGCTTGGTCTCTCGGATTCGGCATCTCCTCAATATG 765
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CCTTGTTGTTGCCACAGTTGCCTTTTTGGCAGGAACACCAGTGTACAAGGTCCAGCTTCC 825
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CAGTGGAAGCCCACTCAAGAGTGTTGTAATGGTTTTTGTTGCCTCTTTTAAGAAGAGAAA 885
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 ACTGGAGGTTCCTGCCGATAACGCACTCCTGTATGAAGGGGATGATGCTGATTTAAGCAA 945
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 TGGACAATCAGTCAAACTAGCACATACTGATGGTTTCAGGTGGTTAGATAAGGCGGCAGT 1005
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 GGTTTTTGAGGAGGTGGAAGAGATAAATAAGGATGAGGGTGGGGGTGGAGGGTGGCTGCA 1065
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 GTGTTCGGTAACGCAGGTGGAGGAAGTGAAGATTCTGCTGCGGATGCTGCCGATATGGGT 1125
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 GACCAGCGTGCTGTACGCGGCTTCCTTGGGTCAGACGGCCACCACCTTCGTGCAGCAGGG 1185
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 GAATGCCATGAACACCAAGATCGGATCCTTCTCTGTCCCGGCGGCATCCCTCAACTCCGC 1245
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CGAGGTCATCTTCATGATGATCTGGGTGGTGTTCCAGGACACGGTGGTCGTCCCGATCGC 1305
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CAGGCGCTACACCGGGAACCCCGCGGGGCTGACGCAGCTGCAGCGGATGGGCGTGGGGCG 1365
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 GTTGCTGGCGGTGCCGGCGCTGGCGGTGGCGGCCGTGCTGGAGACGTGGCGGCTGCGCAG 1425
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CGTCAGGGACGGCGGCAACCTGAGCATCGCGTGGCAGCTGCCGCAGTTCGTCATCCTGGC 1485
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CTGCTCCGACGTCTTCTGCGGCATCGCTCAGCTGGAATTCTTCTACTCGGAGGCCCCCGT 1545
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 GTCGATGCGGAGCCTCTGCTCGGCCTTCTCCTTCCTGGCGCTCTCGCTGGGCTACTACGT 1605
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAAGGGCTGGCT 1665
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CCCCGCCGACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAG 1725
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CGCCATCAACTTTGTGGTGTACGCCGCCTTTGCCAAGAATTATACCGTCAAGAGACTCGC 1785
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 CGTCCCGCACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCCA 1845
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------------------------
consensus_12734#3 ------------------------------------------------------------
consensus_12734#0 ATCAACCATTCTTGTATTATTATTCCACTTGATTCGTTGAGCATGTATATAAACCAAATA 1905
consensus_12734#2 ------------------------------------------------------------
consensus_12734#1 ------------------------------------------
consensus_12734#3 ------------------------------------------
consensus_12734#0 AAAAATAAACCAAATAAAGGGCTGAATCCATGCATTAAAAAA 1947
consensus_12734#2 ------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||