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Oryza sativa
cluster # 12755 cluster # 12755       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12755#0 length = 1381 sequences # 8  
consensus_12755#1 length = 1028 sequences # 2  
consensus_12755#2 length = 290 sequences # 1  

consensusID : consensus_12755#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1381
fasta sequence
                              [AAATTCCAAACCCACTAGGTTACGTAAAAGCGGAAGCCCGGAGGCCGGAGCAGTTGGTCGCCACCGTCACGCGCGTTCCCCTTCCCTCGCCGGAGAGAGAAACCACCGACGCGGCCGCTTCCGGAGGAGGAGGAGGAGTTGGGGT-GGAGGGGAGCTATGGCGGGGAGGTACGACCGGAACCCCTTCGACGAGGACGACGTCAACCCCTTCGCGGGTGGAAGTGTACCTCCAGCTTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTGGACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAGGAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGAGCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTGTTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAAGGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGAT-CCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATAGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATACCTCAAGAGCTTTTTACCTAGGTTCAGATGTGCCTATAGTTAATGTTTTCCTTTTGAAATCCTGCATGATCACAATGGTTCCTAGGGCCGTATTGATTCTTTGTGGCAGGAAACAGTTTGGTTTACTAACTATTTTTCTTCTTTGTTAATATATAAATATTAAGAATAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF311996             [AAATTCCAAACCCACTAGGTTACGTAAAAGCGGAAGCCCGGAGGCCGGAGCAGTTGGTCGCCACCGTCACGCGCGTTCCCCTTCCCTCGCCGGAGAGAGAAACCACCGACGCGGCCGCTTCCGGAGGAGGAGGAGGAGTTGGGGTGGGAGGGGAGCTATGGCGGGGAGGTACGACCGGAACCCCTTCGACGAGGACGACGTCAACCCCTTCGCGGGTGGAAGTGTACCTCCAGCTTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTGGACATACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK068498             [          CCCACTAGGTTACGTAAAAGCGGAAGCCCGGAGGCCGGAGCAGTTGGTCGCCACCGTCACGCGCGTTCCCCTTCCCTCGCCGGAGAGAGAAACCACCGACGCGGCCGCTTCCGGAGGAGGAGGAGGAGTTGGGGT GGAGGGGAGCTATGGCGGGGAGGTACGACCGGAACCCCTTCGACGAGGACGACGTCAACCCCTTCGCGGGTGGAAGTGTACCTCCAGCTTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTGGACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAGGAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGAGCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTGTTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAAGGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGAT CCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATAGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATACCTCAAGAGCTTTTTACCTAGGTTCAGATGTGCCTATAGTTAATGTTTTCCTTTTGAAATCCTGCATGATCACAATGGTTCCTAGGGCCGTATTGATTCTTTGTGGCAGGAAACAGTTTGGTTTACTAACTATTTTTCTTCTTTGTTAATATAT                                     ]
[+] EMBL CF317348             [                  GTTACGTAAAAGCGGAAGCCCGGAGGCCGGAGCAGTTGGTCGCCACCGTCACGCGCGTTCCCCTTCCCTCGCCGGAGAGAGAAACCACCGACGCGGCCGCTTCCGGAGGAGGAGGAGGAGTTGGGGT GGAGGGGAGCTATGGTTGGGAGGTACGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OS0836A              [                                                                                                                                             GGGT GGAGGGGAGCTATGGCGGGGAGGTACGACTNGAACCCCTTCGACGAGGACGACGTCAACCCCTTCGCGGGTGGAAGTGTACCTCCAGCTTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTGGACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAGGAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGAGCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AF225922             [                                                                                                                                                      GGGAGCTATGGCGGGGAGGTACGACCGGAACCCCTTCGACGAGGACGACGTCAACCCCTTCGCGGGTGGAAGTGTACCTCCAGCTTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTGGACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAGGAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGAGCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTGTTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACNGCAGCATGGATTAAAGGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGAT CCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATAGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGG                                                                                                                                                                                                            ]
[-] EMBL CA759418             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTACAATGCGATGAGGACTGAGAGTGCTTTGAAGTTNGGATGGTTTTTCCTGTTTTGCTTGAT CCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTAAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGGAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATAAAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACATCCCTACACCTATGTTGTTCGTATTTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATACCTCAAGAGCTTTTTACCTAGGTTCAGATGTGCCTATAGTTAATGTTTTCCTTTTGAAATCCTGCATGATCCCAATGGTTCCTAGGGCCGTATTGATTCTTTGTGGCAGGAAACAGTTTGGTTTACTAACTATTTTTTTTCTTTGTTAATATATAAATATTAAGAATAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF311997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGATCCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATAGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATACCTCAAGAGCTTTTTACCTAGGTTCAGATGTGCCTATAGTTAATGTTTTCCTTTTGAAATCCTGCATGATCACAATGGTTCCTAGGGCCGTATTGATTCTTTGTGGCAGGAAACAGTTTGGTTTACTAACTATTTTTCTTCTTTGTTAATATATAAATATTAAGAATAAAAAAAA                ]
[+] EMBL AU164980             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATACCTCAAGAGCTTTTTACCTAGGTTCAGATGTGCCTATAGTTAATGTTTTCCTTTTGAAATCCTGCATGATCACAATGGTTCCTAGGGCCGTATTGATTCTTTGTGGCAGGAAACAGTTTGGTTTACTAACTATTTTTCTTCTTTGTTAATATATAAATATTAAGAATAAAAAAAAAAAAAAAAAAAA    ]


>consensus_12755#0 AAATTCCAAACCCACTAGGTTACGTAAAAGCGGAAGCCCGGAGGCCGGAGCAGTTGGTCG CCACCGTCACGCGCGTTCCCCTTCCCTCGCCGGAGAGAGAAACCACCGACGCGGCCGCTT CCGGAGGAGGAGGAGGAGTTGGGGTGGAGGGGAGCTATGGCGGGGAGGTACGACCGGAAC CCCTTCGACGAGGACGACGTCAACCCCTTCGCGGGTGGAAGTGTACCTCCAGCTTCCAAC TCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTG GACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAG GAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGA GCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGAC ATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTG TTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAA GGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGA GCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAG TTTGGATGGTTTTTCCTGTTTTACTTGATCCATATACTGTTCTGCATCTGGTCTGCTGTG GCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTC ATAGGAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTT GAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGG AAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATAG AGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACAT CCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAG GATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATACCTCAAGAGC TTTTTACCTAGGTTCAGATGTGCCTATAGTTAATGTTTTCCTTTTGAAATCCTGCATGAT CACAATGGTTCCTAGGGCCGTATTGATTCTTTGTGGCAGGAAACAGTTTGGTTTACTAAC TATTTTTCTTCTTTGTTAATATATAAATATTAAGAATAAAAAAAAAAAAAAAAAAAAAAA A



consensusID : consensus_12755#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1028
fasta sequence
                              [AGGAGGAGGAGTTGGGGTGGAGGGGAGCTATGGCGGGGAGGGTGGAAGTGTACCTCCAGCTTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTGGACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAGGAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGAGCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTGTTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAAGGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATAGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATAAAAAAAAAAA]

[+] EMBL AU164981             [AGGAGGAGGAGTTGGGGTGGAGGGGAGCTATGGCGGGGAGGGTGGAAGTGTACCTCCAGCTTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTGGACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAGGAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGAGCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTGTTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAAGGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGGATATT                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C98157               [                                                                                                                                                                                                                                                                                                                                           CTACAAAGGATGCAATACCTTGCATTTTCTTCATTGTTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAAGGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGT GGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATAGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTACATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAAAGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATAAAAAAAAAAA]


>consensus_12755#1 AGGAGGAGGAGTTGGGGTGGAGGGGAGCTATGGCGGGGAGGGTGGAAGTGTACCTCCAGC TTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGC CACAGTGGACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCA GGCAAAGGAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGC ATCCAGAGCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCA TCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTC TTCATTGTTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATG GATTAAAGGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGT ACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGC TTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGATCCATATACTGTTCTGCATCTGGTC TGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTAT TGATGTCATAGGAAACAATGCTATTGTGGGGGATATTTTACTTCATTGGATTTGGACTGT TCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTG GAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCT TTTGATAGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCC TTGTACATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATAT AGCTAAAGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATAAA AAAAAAAA



consensusID : consensus_12755#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence
                              [CCATATACTGATCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCNGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCNGNTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATTANGAACGNCCCANCNGCTCC]

[-] EMBL C73699               [CCATATACTGATCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCNGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCNGNTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATTANGAACGNCCCANCNGCTCC]


>consensus_12755#2 CCATATACTGATCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTC TCTGGCTGGGATTTTGCNGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGATATT TTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCA GCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCNGNTGAGATGAAACGTGAGGCAGC TCGTGGTGCTATGAGATCGGCCTTTTGATTANGAACGNCCCANCNGCTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12755#0      AAATTCCAAACCCACTAGGTTACGTAAAAGCGGAAGCCCGGAGGCCGGAGCAGTTGGTCG 60
consensus_12755#1      ------------------------------------------------------------
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      CCACCGTCACGCGCGTTCCCCTTCCCTCGCCGGAGAGAGAAACCACCGACGCGGCCGCTT 120
consensus_12755#1      ------------------------------------------------------------
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      CCGGAGGAGGAGGAGGAGTTGGGGTGGAGGGGAGCTATGGCGGGGAGGTACGACCGGAAC 180
consensus_12755#1      -------AGGAGGAGGAGTTGGGGTGGAGGGGAGCTATGGCGGGGAGG------------ 41
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      CCCTTCGACGAGGACGACGTCAACCCCTTCGCGGGTGGAAGTGTACCTCCAGCTTCCAAC 240
consensus_12755#1      ----------------------------------GTGGAAGTGTACCTCCAGCTTCCAAC 67
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      TCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTG 300
consensus_12755#1      TCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTG 127
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      GACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAG 360
consensus_12755#1      GACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAG 187
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      GAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGA 420
consensus_12755#1      GAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGA 247
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      GCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGAC 480
consensus_12755#1      GCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGAC 307
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      ATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTG 540
consensus_12755#1      ATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTG 367
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      TTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAA 600
consensus_12755#1      TTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAA 427
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      GGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGA 660
consensus_12755#1      GGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGA 487
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      GCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAG 720
consensus_12755#1      GCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAG 547
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      TTTGGATGGTTTTTCCTGTTTTACTTGATCCATATACTGTTCTGCATCTGGTCTGCTGTG 780
consensus_12755#1      TTTGGATGGTTTTTCCTGTTTTACTTGATCCATATACTGTTCTGCATCTGGTCTGCTGTG 607
consensus_12755#2      -----------------------------CCATATACTGATCTGCATCTGGTCTGCTGTG 31
                                                    ********** ********************

consensus_12755#0      GCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTC 840
consensus_12755#1      GCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTC 667
consensus_12755#2      GCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCNGGCTATTGATGTC 91
                       ********************************************** *************

consensus_12755#0      ATAGGAAACAATGCTATTGTGGGG-ATATTTTACTTCATTGGATTTGGACTGTTCTGCCT 899
consensus_12755#1      ATAGGAAACAATGCTATTGTGGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCT 727
consensus_12755#2      ATAGGAAACAATGCTATTGTGGGG-ATATTTTACTTCATTGGATTTGGACTGTTCTGCCT 150
                       ************************ ***********************************

consensus_12755#0      TGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGG 959
consensus_12755#1      TGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGG 787
consensus_12755#2      TGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGG 210
                       ************************************************************

consensus_12755#0      GAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGAT- 1018
consensus_12755#1      GAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGAT- 846
consensus_12755#2      GAAGGCNGNTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGATT 270
                       ****** * ************************************************** 

consensus_12755#0      AGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTAC 1078
consensus_12755#1      AGAGCTGCTTCGATGGACGGGAGAGAATAGGATGTGTCGTTCTGTGGTGGCGCCTTGTAC 906
consensus_12755#2      ANGAACGNCCCANCNGCTCC---------------------------------------- 290
                       *     *   *    *                                            

consensus_12755#0      ATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAA 1138
consensus_12755#1      ATCCCTACACCTATGTTGTTCGTATCTAAGTTATTCCATTTTACAGCAGCATATAGCTAA 966
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      AGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATACCTCAAGA 1198
consensus_12755#1      AGGATTTTCCTGCCTTAATGTAATATATGTTCACTGGGGCCTTTTATGGATAAAAAAAAA 1026
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      GCTTTTTACCTAGGTTCAGATGTGCCTATAGTTAATGTTTTCCTTTTGAAATCCTGCATG 1258
consensus_12755#1      AA---------------------------------------------------------- 1028
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      ATCACAATGGTTCCTAGGGCCGTATTGATTCTTTGTGGCAGGAAACAGTTTGGTTTACTA 1318
consensus_12755#1      ------------------------------------------------------------
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      ACTATTTTTCTTCTTTGTTAATATATAAATATTAAGAATAAAAAAAAAAAAAAAAAAAAA 1378
consensus_12755#1      ------------------------------------------------------------
consensus_12755#2      ------------------------------------------------------------
                                                                                   

consensus_12755#0      AAA 1381
consensus_12755#1      ---
consensus_12755#2      ---
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)