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Oryza sativa
cluster # 12783 cluster # 12783       Sequences # 11       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12783#0 length = 1246 sequences # 5  
consensus_12783#1 length = 402 sequences # 1  
consensus_12783#2 length = 377 sequences # 2  
consensus_12783#3 length = 341 sequences # 1  
consensus_12783#4 length = 296 sequences # 2  

consensusID : consensus_12783#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1246
fasta sequence
                              [CGGCGCAAAAGCGAGTGAACCGCTTGAACCGGAAGCGACTCGAGTCCAAGCCAAGCCACGCGCTGCACCACTCGCCGCTTTACCCGCCGTTCTCCTCCTCCTCCTCCTCCACGCGCGGCGGCGAGGCGGAGCCAAGCCCTAGGAAGGAGCGGCGCGTCACCGGCGGCGGCGGCGGCATGCATCACGACCCCAACCCGTTCGACGAGGGCAACGCCGACGACAACCCCTTCTCCAATGGGGGAGGTGGTGGTGGCGGCGGCGGCAGCAGGCAGCAGTACGGGTTCCGCCCCACGGAGCCCGCCGGCTTCGGCGCCGGCAGGGGGGACGCCACCGTCGATGTCCCGCTCGACACCATGGGCGACTCCAAGAGCAAGGCAAGGGAGCTCTCATCGTGGGAAACAGATCTGAAGCGGCGGGAGGCGGATATCAAAAGGAGGGAGGAAGCGCTGAGGAATGCTGGAGTGCCAATGGAGGATAAGAACTGGCCACCATTCTTCCCGATCATTCACCATGACATTGCCAATGAGATACCGGCTAATTTGCAGAAATTGCAGTATCTCGCGTTCGCAAGCTGGCTTGGTATCGTGCTTTGCCTCTCATGGAACTTCATCGCTGTCATAGTCTGTTGGATCAAGGAGGGAGATTCGAAGCTGTTTTTCCTTGCCACTATCTATGCCTTGCTTGGAATTCCCCTCTCGTACTTGATATGGTATAGGCCTCTCTACCGTGCTATGAGGACTAACAGTGCGTTCAGTTTTGGATGGTTCTTTCTCTGTTACTTGATCCACATTGGCTTTTGCATTATTGCTGCCATTGCCCCGCCAATTGTGTTTCATGGAAAATCATTAACGGGCATACTGGCTGCCATAGACACCTTTTCTGAGCATGTGATAATTGGGATCTTTTACTTTGTGGGGTTCGCGCTGTTTTGCTTGGAGACACTGCTGAGCATTGGAGTTCTTCAGAGAGTGTACATGTACTTCAGAGGGAACAAGTGAAGCTATTCATCATGATGGAAAGNTTCCGGTGATCACCAGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAAATCAGTACACCCTGAGAATGNCTCTTCATGTCAGNTTATTGNGAAANCTTTTCAAGCTTGNTACGGGGTAAGGTTGGTAGCATCGGTATCATAGCTTTGGGTCTGGAACGAGGNGGTTTGATTCTTGGCAACTGGAGTCCGTATGNGATGGGGTANATCGCCGGTTTGCCTG]

[+] EMBL OSS10417A            [CGGCGCAAAAGCGAGTGAACCGCTTGAACCGGAAGCGACTCGAGTCCAAGCCAAGCCACGCGCTGCACCACTCGCCGCTTTACCCGCCGTTCTCCTCCTCCTCCTCCTCCACGCGCGGCGGCGAGGCGGAG CAAGCCCTAGGAAGGAGCGGCGCGTCACCGGCGGCGGCGGCGGCATGCATCACGACCCCAACCCGTTCGACGAGGGCAACGCCGACGACAACCCCTTCTTCAATGGGGGAGGTGGTGGTGGCGGCGGCGGNAG AGGNAGCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK120076             [                                                AGCCAAGCCACGCGCTGCACCACTCGCCGCTTTACCCGCCGTTCTCCTCCTCCTCCTCCTCCACGCGCGGCGGCGAGGCGGAGCCAAGCCCTAGGAAGGAGCGGCGCGTCACCGGCGGCGGCGGCGGCATGCATCACGACCCCAACCCGTTCGACGAGGGCAACGCCGACGACAACCCCTTCTCCAATGGGGGAGGTGGTGGTGGCGGCGGCGGCAGCAGGCAGCAGTACGGGTTCCGCCCCACGGAGCCCGCCGGCTTCGGCGCCGGCAGGGGGGACGCCACCGTCGATGTCCCGCTCGACACCATGGGCGACTCCAAGAGCAAGGCAAGGGAGCTCTCATCGTGGGAAACAGATCTGAAGCGGCGGGAGGCGGATATCAAAAGGAGGGAGGAAGCGCTGAGGAATGCTGGAGTGCCAATGGAGGATAAGAACTGGCCACCATTCTTCCCGATCATTCACCATGACATTGCCAATGAGATACCGGCTAATTTGCAGAAATTGCAGTATCTCGCGTTCGCAAGCTGGCTTGGTATCGTGCTTTGCCTCTCATGGAACTTCATCGCTGTCATAGTCTGTTGGATCAAGGAGGGAGATTCGAAGCTGTTTTTCCTTGCCACTATCTATGCCTTGCTTGGAATTCCCCTCTCGTACTTGATATGGTATAGGCCTCTCTACCGTGCTATGAGGACTAACAGTGCGTTCAGTTTTGGATGGTTCTTTCTCTGTTACTTGATCCACATTGGCTTTTGCATTATTGCTGCCATTGCCCCGCCAATTGTGTTTCATGGAAAATCATTAACGGGCATACTGGCTGCCATAGACACCTTTTCTGAGCATGTGATAATTGGGATCTTTTACTTTGTGGGGTTCGCGCTGTTTTGCTTGGAGACACTGCTGAGCATTGGAGTTCTTCAGAGAGTGTACATGTACTTCAGAGGGAACAAGT                                                                                                                                                                                                                                                          ]
[+] EMBL AK058642             [                                                                           CGCTTTACCCGCCGTTCTCCTCCTCCTCCTCCTCCACGCGCGGCGGCGAGGCGGAGCCAAGCCCTAGGAAGGAGCGGCGCGTCACCGGCGGCGGCGGCGGCATGCATCACGACCCCAACCCGTTCGACGAGGGCAACGCCGACGACAACCCCTTCTCCAATGGGGGAGGTGGTGGTGGCGGCGGCGGCAGCAGGCAGCAGTACGGGTTCCGCCCCACGGAGCCCGCCGGCTTCGGCGCCGGCAGGGGGGACGCCACCGTCGATGTCCCGCTCGACACCATGGGCGACTCCAAGAGCAAGGCAAGGGAGCTCTCATCGTGGGAAACAGATCTGAAGCGGCGGGAGGCGGATATCAAAAGGAGGGAGGAAGCGCTGAGGAATGCTGGAGTGCCAATGGAGGATAAGAACTGGCCACCATTCTTCCCGATCATTCACCATGACATTGCCAATGAGATACCGGCTAATTTGCAGAAATTGCAGTATCTCGCGTTCGCAAGCTGGCTTGGTATCGTGCTTTGCCTCTCATGGAACTTCATCGCTGTCATAGTCTGTTGGATCAAGGAGGGAGATTCGAAGCTGTTTTTCCTTGCCACTATCTATGCCTTGCTTGGAATTCCCCTCTCGTACTTGATATGGTATAGGCCTCTCTACCGTGCTATGAGGACTAACAGTGCGTTCAGTTTTGGATGGTTCTTTCTCTGTTACTTGATCCACATTGGCTTTTGCATTATTGCTGCCATTGCCCCGCCAATTGTGTTTCATGGAAAATCATTAACGGGCATACTGGCTGCCATAGACACCTTTTCTGAGCATGTGATAATTGGGATCTTTTACTTTGTGGGGTTCGCGCTGTTTTGCTTGGAGACACTGCTGAGCATTGGAGTTCTTCAGAGAGTGTACATGTACTTCAGAGGGAACAAGT                                                                                                                                                                                                                                                          ]
[+] EMBL CB096275             [                                                                                                                                                                                                                                                                                                                                                                                       CAAGGGAGCTCTCATCGTGGGAAACAGATCTGAAGCGGCGGGAGGCGGATATCAAAAGGAGGGAGGAAGCGCTGAGGAATGCTGGAGTTCCAATGGAGGATAAGAACTGGCCACCATTCTTCCCGATCATTCACCATGACATTGCCAATGAGATACCGGCTAATTTGCAGAAATTGCAGTATCTCGCGTTCGCAAGCTGGCTTGGTATCGTGCTTTGCCTCTCATGGAACTTCATCGCTGTCATAGTCTGTTGGATCAAGGAGGGAGATTCGAAGCTGTTTTTCCTTGCCACTATCTATGCCTTGCTTGGAATTCCCCTGTCGTACTTGATATG  ATAGGCCTCTCTACCGTGCTATGAGGACTAACAGTGCGTTCAGTTTTGGATGGTTCTTTCTCTGTTACTTGATCCACATTGGCTTTTGCATTATTGCTGCCATTGCCCCGCCAATTGTGTTTCATGGAAAATCATTAACGGGCATACTAGCTGCCATAGACACCTTTTCTGAGCATGTGATAATTGGGATCTTTTACTTTGTGGGGTTCGCGCTGTTTTGCTTGGAGACACTGCTGAGCATTGGAGTTCTTCAGAGAGTGTACATGTACTTCAGAGGGAACAAGTGAAGCTATTCATCATGATGGAAAGNTTCCGGTGATCACCAGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAAATCAGTACACCCTGAGAATGNCTCTTCATGTCAGNTTATTGNGAAANCTTTTCAAGCTTGNTACGGGGTAAGGTTGGTAGCATCGGTATCATAGCTTTGGGTCTGGAACGAGGNGGTTTGATTCTTGGCAACTGGAGTCCGTATGNGATGGGGTANATCGCCGGTTTGCCTG]
[+] EMBL AA751177             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCATGTGATAATTGGGATCTTTTACTTTGTGGGGTTCGCGCTGTTTTGCTTGGAGGCACTGCTGAGCATTGGAGTTCTTCAGAGAGTGTACATGTACTTCAGAGGGAACAAGT                                                                                                                                                                                                                                                          ]


>consensus_12783#0 CGGCGCAAAAGCGAGTGAACCGCTTGAACCGGAAGCGACTCGAGTCCAAGCCAAGCCACG CGCTGCACCACTCGCCGCTTTACCCGCCGTTCTCCTCCTCCTCCTCCTCCACGCGCGGCG GCGAGGCGGAGCCAAGCCCTAGGAAGGAGCGGCGCGTCACCGGCGGCGGCGGCGGCATGC ATCACGACCCCAACCCGTTCGACGAGGGCAACGCCGACGACAACCCCTTCTCCAATGGGG GAGGTGGTGGTGGCGGCGGCGGCAGCAGGCAGCAGTACGGGTTCCGCCCCACGGAGCCCG CCGGCTTCGGCGCCGGCAGGGGGGACGCCACCGTCGATGTCCCGCTCGACACCATGGGCG ACTCCAAGAGCAAGGCAAGGGAGCTCTCATCGTGGGAAACAGATCTGAAGCGGCGGGAGG CGGATATCAAAAGGAGGGAGGAAGCGCTGAGGAATGCTGGAGTGCCAATGGAGGATAAGA ACTGGCCACCATTCTTCCCGATCATTCACCATGACATTGCCAATGAGATACCGGCTAATT TGCAGAAATTGCAGTATCTCGCGTTCGCAAGCTGGCTTGGTATCGTGCTTTGCCTCTCAT GGAACTTCATCGCTGTCATAGTCTGTTGGATCAAGGAGGGAGATTCGAAGCTGTTTTTCC TTGCCACTATCTATGCCTTGCTTGGAATTCCCCTCTCGTACTTGATATGGTATAGGCCTC TCTACCGTGCTATGAGGACTAACAGTGCGTTCAGTTTTGGATGGTTCTTTCTCTGTTACT TGATCCACATTGGCTTTTGCATTATTGCTGCCATTGCCCCGCCAATTGTGTTTCATGGAA AATCATTAACGGGCATACTGGCTGCCATAGACACCTTTTCTGAGCATGTGATAATTGGGA TCTTTTACTTTGTGGGGTTCGCGCTGTTTTGCTTGGAGACACTGCTGAGCATTGGAGTTC TTCAGAGAGTGTACATGTACTTCAGAGGGAACAAGTGAAGCTATTCATCATGATGGAAAG NTTCCGGTGATCACCAGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAAATCAGT ACACCCTGAGAATGNCTCTTCATGTCAGNTTATTGNGAAANCTTTTCAAGCTTGNTACGG GGTAAGGTTGGTAGCATCGGTATCATAGCTTTGGGTCTGGAACGAGGNGGTTTGATTCTT GGCAACTGGAGTCCGTATGNGATGGGGTANATCGCCGGTTTGCCTG



consensusID : consensus_12783#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence
                              [GCAGTACGGGTTCCGCCCCACGGAGCCCGCCGGCTTCGGCGCCGGCAGGGGGGACGCCACCGTCGATGTCCCGCTCGACACCATGGGCGACTCCAAGAGCAAGGCAAGGGAGCTCTCATCGTGGGAAACAGATCTGAAGCGGCGGGAGGCGGATATCAAAAGGAGGGAGGAAGCGCTGAGGAATGCTGGAGTGCCAATGGAGGATAAGAACTGGCCACCATTCTTCCCGATCATTCACCATGACATTGCCAATGAGATACCGGCTAATTTGCAGAAATTGCAGTATCTCGCGTTCGCAAGCTGGCTTGGTAGGTGTAGATTGGACATTGTTATTGCAATTTGCTACATCAATTGTTTGGTAGTACTACATTGTTTGCTTATCTAGCTGAGTCTCTGGATTAA]

[+] EMBL C22398               [GCAGTACGGGTTCCGCCCCACGGAGCCCGCCGGCTTCGGCGCCGGCAGGGGGGACGCCACCGTCGATGTCCCGCTCGACACCATGGGCGACTCCAAGAGCAAGGCAAGGGAGCTCTCATCGTGGGAAACAGATCTGAAGCGGCGGGAGGCGGATATCAAAAGGAGGGAGGAAGCGCTGAGGAATGCTGGAGTGCCAATGGAGGATAAGAACTGGCCACCATTCTTCCCGATCATTCACCATGACATTGCCAATGAGATACCGGCTAATTTGCAGAAATTGCAGTATCTCGCGTTCGCAAGCTGGCTTGGTAGGTGTAGATTGGACATTGTTATTGCAATTTGCTACATCAATTGTTTGGTAGTACTACATTGTTTGCTTATCTAGCTGAGTCTCTGGATTAA]


>consensus_12783#1 GCAGTACGGGTTCCGCCCCACGGAGCCCGCCGGCTTCGGCGCCGGCAGGGGGGACGCCAC CGTCGATGTCCCGCTCGACACCATGGGCGACTCCAAGAGCAAGGCAAGGGAGCTCTCATC GTGGGAAACAGATCTGAAGCGGCGGGAGGCGGATATCAAAAGGAGGGAGGAAGCGCTGAG GAATGCTGGAGTGCCAATGGAGGATAAGAACTGGCCACCATTCTTCCCGATCATTCACCA TGACATTGCCAATGAGATACCGGCTAATTTGCAGAAATTGCAGTATCTCGCGTTCGCAAG CTGGCTTGGTAGGTGTAGATTGGACATTGTTATTGCAATTTGCTACATCAATTGTTTGGT AGTACTACATTGTTTGCTTATCTAGCTGAGTCTCTGGATTAA



consensusID : consensus_12783#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 377
fasta sequence
                              [CCAGTAGCACACCTCTTCATGCATCGCTTCTGTGCATAC-AATCAGTACACCCTGAGAATGTCTCTTCATGTCAGTTTATTGTGAAACCTTTTCAAGCTTGTTATGGGGTA-GTTGTTAGCATCGTTATCATAGCTTTGTGTCTGGAACGAGGTGTTTTGATTCTT-GCAAACTGTAGTCCGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGG-TCCCGTTAAATGAGCTAAGGCTATTCTCGCTCGGGAAAATAGACAC-AAATTGCATTCAGACCTGGATCATATATATGCACCCTTGCGGATTGTTGGCTTGATGCTGTGCTTCCCGATTTTTACTATCCATCTAACTCAACAGATTCATCTGGCAAAAAAAAAA]

[+] EMBL BI806559             [CCAGTAGCACACCTCTTCATGCATCGCTTCTGTGCATAC AATCAGTACACCCTGAGAATGTCTCTTCATGTCAGTTTATTGTGAAACCTTTTCAAGCTTGTTATGGGGTA GTTGTTAGCATCGTTATCATAGCTTTGTGTCTGGAACGAGGTGTTTTGATTCTT GCAAACTGTAGTCCGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGG TCCCGTTAAATGAGCTAAGGCTATTCTCGCTCGGGAAAATAGACAC AAATTGCATTCAGACCTGGATCATATATATGCACCCTTGCGGATTGTTGGCTTGATGCTGTGCTTCCCGATTTTTACTATCCATCTAACTCAACAGATTCATCTGGCAAAAAAAAAA]
[+] EMBL CA767456             [CCAGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAAATCAGTACACCCTGAGAATGTCTCTTCATGTCAGTTTATTGTGAAACCTTTTCAAGCTTGTTACGGGGTAGGTTGTTAGCATCGTTATCATAGCTTTGTGTCTGGAACGAGGTGTTTT ATTCTTGGCGAACTGTAGTCCGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGGTTACCGTTAAATGAGCTAAGGCTATTTTCGCTCGGGAAAATAGACACAAAATTGCATTCAGACCTGGATCATATATATGCACCCTTGCGGATTGTTGGCTTGATGCTGTGCT                                                     ]


>consensus_12783#2 CCAGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAATCAGTACACCCTGAGAATG TCTCTTCATGTCAGTTTATTGTGAAACCTTTTCAAGCTTGTTATGGGGTAGTTGTTAGCA TCGTTATCATAGCTTTGTGTCTGGAACGAGGTGTTTTGATTCTTGCAAACTGTAGTCCGT ATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGGTCCCGTTAAATGAGCTAAGGCTATTC TCGCTCGGGAAAATAGACACAAATTGCATTCAGACCTGGATCATATATATGCACCCTTGC GGATTGTTGGCTTGATGCTGTGCTTCCCGATTTTTACTATCCATCTAACTCAACAGATTC ATCTGGCAAAAAAAAAA



consensusID : consensus_12783#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence
                              [GCACGGCTGCACCACTCGCCGTTTACCCGCCGTTCTCCTCCTCCTCCTCCTCCACGCGCGGCGGCGTAGGCGGACAAGCCCTAGGAAGGAGCGGCGCGTCACCNGCGCGGCGGCGGCATGCATCACGACCCAACCCGTTCGACGAGGGCAACGCGACGCACCCTTCTCCAATTGGGGAGGTGGTGGTGGCGCGCGGCAGCAGGCAGCAGTACGGGTTCGCCACGAGCCGCGCTTCGCGCGGAGGGGGACGCACCGTCGATGTCCGTCGACACATGGCGACTCAGAGCAAGNAAGNAGTTTATCGTGGNACAGATTTAAGCGCGGAGCGATATAAAAGAGGA]

[+] EMBL OS0212A              [GCACGGCTGCACCACTCGCCGTTTACCCGCCGTTCTCCTCCTCCTCCTCCTCCACGCGCGGCGGCGTAGGCGGACAAGCCCTAGGAAGGAGCGGCGCGTCACCNGCGCGGCGGCGGCATGCATCACGACCCAACCCGTTCGACGAGGGCAACGCGACGCACCCTTCTCCAATTGGGGAGGTGGTGGTGGCGCGCGGCAGCAGGCAGCAGTACGGGTTCGCCACGAGCCGCGCTTCGCGCGGAGGGGGACGCACCGTCGATGTCCGTCGACACATGGCGACTCAGAGCAAGNAAGNAGTTTATCGTGGNACAGATTTAAGCGCGGAGCGATATAAAAGAGGA]


>consensus_12783#3 GCACGGCTGCACCACTCGCCGTTTACCCGCCGTTCTCCTCCTCCTCCTCCTCCACGCGCG GCGGCGTAGGCGGACAAGCCCTAGGAAGGAGCGGCGCGTCACCNGCGCGGCGGCGGCATG CATCACGACCCAACCCGTTCGACGAGGGCAACGCGACGCACCCTTCTCCAATTGGGGAGG TGGTGGTGGCGCGCGGCAGCAGGCAGCAGTACGGGTTCGCCACGAGCCGCGCTTCGCGCG GAGGGGGACGCACCGTCGATGTCCGTCGACACATGGCGACTCAGAGCAAGNAAGNAGTTT ATCGTGGNACAGATTTAAGCGCGGAGCGATATAAAAGAGGA



consensusID : consensus_12783#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 296
fasta sequence
                              [CCCGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAAATCAGTACACCCTGAGAATGTCTCTTCATGTCAGTTTATTGTGAAACCTTTTCAAGCTTGTTATGGGGTAGGTTGTTAGCATCGTTATCATAGCTTTGTGTCTGGAACGAGGTGTTTTGATTCTTGGCAAACTGTAGTCCGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGGTTACCGTTAAATGAGCTAAGGCTATTCTCGCTCGGGAAAATAGACACAAAATTGCATTCAGNCCAAAAAAAAAAAAAAA]

[+] EMBL AU095716             [CCCGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAAATCAGTACACCCTGAGAATGTCTCTTCATGTCAGTTTATTGTGAAACCTTTTCAAGCTTGTTATGGGGTAGGTTGTTAGCATCGTTATCATAGCTTTGTGTCTGGAACGAGGTGTTTTGATTCTTGGCAAACTGTAGTCCGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGGTTACCGTTAAATGAGCTAAGGCTATTCTCGCTCGGGAAAATAGACACAAAATTGCATTCAGNCCAAAAAAAAAAAAAAA]
[+] EMBL C22397               [CCAGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAAATCAGTACACCCTGAGAATGTCTCTTCATGTCAGTTTATTGTGAAACCTTTTCAAGCTTGTTATGGGGTAGGTTGTTAGCATCGTTATCATAGCTTTGTGTCTGGAACGAGGTGTTTTGATTCTTGGCAAACTGTAGTCCGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGGTTACCGTTAAATGAGCTAAGGCTATTCTCGCTCGGGAAAATAGACACAAAATTGCATTCAGACCAAAAAAAAAA     ]


>consensus_12783#4 CCCGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAAATCAGTACACCCTGAGAAT GTCTCTTCATGTCAGTTTATTGTGAAACCTTTTCAAGCTTGTTATGGGGTAGGTTGTTAG CATCGTTATCATAGCTTTGTGTCTGGAACGAGGTGTTTTGATTCTTGGCAAACTGTAGTC CGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGGTTACCGTTAAATGAGCTAAGGCT ATTCTCGCTCGGGAAAATAGACACAAAATTGCATTCAGNCCAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12783#0      CGGCGCAAAAGCGAGTGAACCGCTTGAACCGGAAGCGACTCGAGTCCAAGCCAAGCCACG 60
consensus_12783#3      -------------------------------------------------------GCACG 5
consensus_12783#1      ----------------------------------------------------GCAGTACG 8
consensus_12783#2      ----------------------------------------------------------CC 2
consensus_12783#4      ----------------------------------------------------------CC 2
                                                                                 * 

consensus_12783#0      CGCTGCACC-------ACTCGCCGCTTTACCCGCCGTTCTC-----CTCCTCCTCCTCCT 108
consensus_12783#3      -GCTGCACC-------ACTCGCCG-TTTACCCGCCGTTCTC-----CTCCTCCTCCTCCT 51
consensus_12783#1      GGTTCCGCCCCACGGAGCCCGCCGGCTTCGGCGCCGGCAGGGGGGACGCCACCGTCGATG 68
consensus_12783#2      AGTAGCACACCTCTTCATGCATCG-CTTCTGTGCATACAA---TCAGTACACCCTGAGAA 58
consensus_12783#4      CGTAGCACACCTCTTCATGCATCG-CTTCTGTGCATACAAA--TCAGTACACCCTGAGAA 59
                        *   * *           *  **  **    **               * **       

consensus_12783#0      CCACGCGCGGCGGCG-AGGCGGAGCCAAGCCCTAGGAAGGAGCGG-CGCGTCACCGGCGG 166
consensus_12783#3      CCACGCGCGGCGGCGTAGGCGGA--CAAGCCCTAGGAAGGAGCGG-CGCGTCACCNGCG- 107
consensus_12783#1      TCCCGCTCGACACCATGGGCGACTCCAAGAGCAAGGCAAGGGAGCTCTCATCGTGGGAAA 128
consensus_12783#2      TGTCTCTTCATGTCA--GTTTATTGTGAAACCTTTTCAAG------CTTGTTATGGGGTA 110
consensus_12783#4      TGTCTCTTCATGTCA--GTTTATTGTGAAACCTTTTCAAG------CTTGTTATGGGGTA 111
                          * *       *   *         *   *     * *      *   *     *   

consensus_12783#0      CGGCGGCGGCATGCATCACGACCCCAACCCGTTCGACGAGGGCAACGCCGACGACAACCC 226
consensus_12783#3      CGGCGGCGGCATGCATCACGACCC-AACCCGTTCGACGAGGGCAACG----CGACGCACC 162
consensus_12783#1      CAGATCTGAAGCGGCGGGAGGCGGATATCAAAAGGAGGGAGGAAGCGC---TGAGGAATG 185
consensus_12783#2      G-TTGTTAGCATCGTTATCATAGC---TTTGTGTCTGGAACGAGGTG----TTTTGATTC 162
consensus_12783#4      GGTTGTTAGCATCGTTATCATAGC---TTTGTGTCTGGAACGAGGTG----TTTTGATTC 164
                                                            *   *    *             

consensus_12783#0      CTT---CTCCAATGGGGGAGGTGGTGGTGGCGGCGGCGGCAGCAGGCAG-CAGTACGGGT 282
consensus_12783#3      CTT---CTCCAATTGGGGAGGTGGTGGTGGCGC--GCGGCAGCAGGCAG-CAGTACGGGT 216
consensus_12783#1      CTGGAGTGCCAATGGAGGATAAGAACTGGCCACCATTCTTCCCGATCATTCACCATGACA 245
consensus_12783#2      TTG-----CAAACTGTAGTCCGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGGTC- 216
consensus_12783#4      TTGG----CAAACTGTAGTCCGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGGTTA 220
                        *      * **  *  *                        *       *     *   

consensus_12783#0      TCCGCCCCACGGAGCCCGCCGGCTTCGGCGCCGGCAGGGGGGACGCCACCGTCGA-TGTC 341
consensus_12783#3      TCG---CCACGAG--CCGC--GCTTCG----CGCGGAGGGGGACGC-ACCGTCGA-TGTC 263
consensus_12783#1      TTGCCAATGAGATACCGGCTAATTTGCAGAAATTGCAGTATCTCGCGTTCGCAAGCTGGC 305
consensus_12783#2      CCGTTAAATGAGCTAAGGCTATTCTCGCTCGGGAAAATAGACACAAA-TTGCATTCAGAC 275
consensus_12783#4      CCGTTAAATGAGCTAAGGCTATTCTCGCTCGGGAAAATAGACACAAAATTGCATTCAGNC 280
                                        **     *                  *      *      * *

consensus_12783#0      CCGCTCGACACC-ATGGGCGACTCCA--AGAGCAAGGCAAGGGAGCTCTCATCGTGGGAA 398
consensus_12783#3      CG--TCGACAC--ATGG-CGACTC----AGAGCAAGNAAGNAG----TTTATCGTGGN-- 308
consensus_12783#1      TTGGTAGGTGTAGATTGGACATTGTT--ATTGCAATTTGCTACATCAATTGTTTGGTAGT 363
consensus_12783#2      CTGGATCATATATATGCACCCTTGCGGATTGTTGGCTTGATGCTGTGCTTCCCGATTTTT 335
consensus_12783#4      CAAAAAAAAAAAAAAA-------------------------------------------- 296
                                    *                                              

consensus_12783#0      ACAGATCTGAAGCGGCGGGAGGCGGATATCAAAAGGAGGGAGGAAGCGCTGAGGAATGCT 458
consensus_12783#3      ACAGATTTAA----GCGCGGAGCG-ATATAAAAGAGGA---------------------- 341
consensus_12783#1      ACTACATTGTTTGCTTATCTAGCTGAGTCTCTGGATTAA--------------------- 402
consensus_12783#2      ACTATCCATCTAACTCAACAGATTCATCTGGCAAAAAAAAAA------------------ 377
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      GGAGTGCCAATGGAGGATAAGAACTGGCCACCATTCTTCCCGATCATTCACCATGACATT 518
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      GCCAATGAGATACCGGCTAATTTGCAGAAATTGCAGTATCTCGCGTTCGCAAGCTGGCTT 578
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      GGTATCGTGCTTTGCCTCTCATGGAACTTCATCGCTGTCATAGTCTGTTGGATCAAGGAG 638
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      GGAGATTCGAAGCTGTTTTTCCTTGCCACTATCTATGCCTTGCTTGGAATTCCCCTCTCG 698
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      TACTTGATATGGTATAGGCCTCTCTACCGTGCTATGAGGACTAACAGTGCGTTCAGTTTT 758
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      GGATGGTTCTTTCTCTGTTACTTGATCCACATTGGCTTTTGCATTATTGCTGCCATTGCC 818
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      CCGCCAATTGTGTTTCATGGAAAATCATTAACGGGCATACTGGCTGCCATAGACACCTTT 878
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      TCTGAGCATGTGATAATTGGGATCTTTTACTTTGTGGGGTTCGCGCTGTTTTGCTTGGAG 938
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      ACACTGCTGAGCATTGGAGTTCTTCAGAGAGTGTACATGTACTTCAGAGGGAACAAGTGA 998
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      AGCTATTCATCATGATGGAAAGNTTCCGGTGATCACCAGTAGCACACCTCTTCATGCATC 1058
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      GCTTCTGTGCATACAAATCAGTACACCCTGAGAATGNCTCTTCATGTCAGNTTATTGNGA 1118
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      AANCTTTTCAAGCTTGNTACGGGGTAAGGTTGGTAGCATCGGTATCATAGCTTTGGGTCT 1178
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      GGAACGAGGNGGTTTGATTCTTGGCAACTGGAGTCCGTATGNGATGGGGTANATCGCCGG 1238
consensus_12783#3      ------------------------------------------------------------
consensus_12783#1      ------------------------------------------------------------
consensus_12783#2      ------------------------------------------------------------
consensus_12783#4      ------------------------------------------------------------
                                                                                   

consensus_12783#0      TTTGCCTG 1246
consensus_12783#3      --------
consensus_12783#1      --------
consensus_12783#2      --------
consensus_12783#4      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)