These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2612 fasta sequence [GAGCAAAGGTGGAGTTCATGCCCTCATCATATGCCATGCAGATTATGTCAAACTAAAAGCACTTGCAATATCAATAGCTGAGGAAATTGAGTTTCAGTTTGACTATAAAGATGTTGCACTAGCAAATGCGTCCAAGTCTAATTTGCATCTAATTAATATTTCAATTGATGATGAGGGATATGAGGAAGAGGGAACAGATTGGACATCACGGATGGGTCTAAACCTCAAACATAGTTCCAAGATTAGGAAAGAAACACCAGAGAGTCAAGAACAGCCTCCTTTATCATTTTGGGGATTATTTTCCAAGCCATCACCTATTTCAGTTGTTTCAAACTTGAAATGGCTTTGCAGGAAAGCACGGGACTCCATATAAGGTCATTGGTTATGCTTCCAGCCCTGGATGTTGTGGCAACTCCAGACAAAGTTAAGCCCGCAGTTACAAAAACTCAGATAGACACTTCTGGAAATGCTCATGAAAACATTGGAAGTGAACAAACTCTGCAACAAGATTGTGTCCTGCAAGAATCCAATGATGTAGCTGATATGTGCAAGCGTCCCAAGGTGAATGATCAGGATGGACATTCTCTTATTAATATNCCAATTGCTGTTGCTGAATATCCTATGATGCATCAAGTTTGTGAGCGTCCAGTAAGTGTGAGTGCATGTGATGACCCTATCTGTTCATTTGATTCCCAGGATTCACCCACAACTGTTGCAGTGTCAGCTGGCAAACCTACCAGAGAACAATGTGGTGCTGAATCAACTGAGTTGAGTACTGTAAAACAGTTCCTGGACAATGGGCTTATCGCTGAGGGAGGCAGCATGAACTTCATAAGTAATCATGAGCACTTAGAATCTGACAATGCAACTTCAGTGTGCAAAGATGAACAATTGCAAGTTCAACAAGATCAGTTGGCCATGGTACTTTGTAATAATCCCAACACAGAATTGGTTGCAGGAGAATTACATGGGGGGGCAGCATCATCAACCCTTGAAAATGAGGATAGCTGTGGTAATACGTCTTACTGTTCTGACACTGTATTAAAGAACAGCGAACCTGATACAGATGATCAACCTGAAACATGTGATCGTAGTGTTGTTCTTGTAACACCAAAGTCGAGCTGTGACCAGATGATTTCTAGCAGTGACAGAAGTTGCAGTCTGACCTTGGACTGCCCTGTCTCCACTGATGCTGCCTTTTCAAGCGAAAAGCTGTCTATGGCTCATGATTTGATGGGCAGAGAGTTGCAGGCAGTCCATAATTCAAAGGCTGAGGTTGTGGCCAGTTTGACTGATGTCAAGGGTGCTAAGCTCAATAGCATTCATACCACACAGTTACCTCATGAATCTCCAAGCAGTGATTTCATCATTTCAGAAGGTGCGCAATCTGCTTCAACAACTGCAATTCCCAGAAAAAATGGAACATCCATGCACACAGAGTCAAATTCAATTGATATTTTACTTGGAGTTCTAGCCGATGAATCTAAGGTCTCTTCTGGAAAGGATGAGGTTGGCAAAGCTTCCTTGACATTGATGACACTGGCTGGCAATGACCAATCTGCAGATGATGTAACTCAGGATGAAGTTGCAGAGATCACTGATCCGTCGCATGGCTTCTGCTCATCAGACATAGTGTCTAGAAGCATTGGAAGTTCAAACAGAACAAATATCATATGTTATGCCAGACGCAAACACAAAAGAAAGAGCGGATCTGAGTTCAATATTAATAGTCCCCAAAGC-TTGGGGAGCTTTGTCCGCTCT-CCAT-GTGAAAGC-TTGAGACCAAGGACTAGACCTGCGATTGTTGAAGACATGACAAACGAAACAAAAACTGCAGAAGCTTCAACTGCAAATAAGAGGAAGAAGGCAAAGGTGGAAGCATTT-CAGTGTGA-CATAGAATTTTGTGACATGACATTTGAGACTAAAGCTGAACTTCGTGCTCACCAACGCAATATCTGCACCGACGAGTCTTGTGGCAAGCGCTTCAGCTCTCACAAATACCTGAAGCGTCATCAGTGTGTACA-CAGAGATGAGAGGCCATTCAAATGCCCCTGGGATGGTTGTCCAATGACTTTCAAGTGGTTGTGGGCGCAAACTGAGCATATCAGAGTCCATACAGGCGAGCGACCGTACAAGTGCTCGGCTCCTGACTGTGGCCAGAGTTTCAGATATGTCTCAGATTATAGTCGCCATAGAAAGAAGTTTAATCATTATTGATAGGTTGCCACTTTTCATGTTACTGATGAGTGATCACAGCTGGGGGCAAAAGCTCTAGCTGTTGAGGCCATGCTTGTTGTACCAGATCACGTATTTAACCA-CCTGACGTCTGATAGGCCTAGTGTTTGTTCCTTCGTTAGCAATGTGTTTAGTGTAGAAAGTAGAGAAATAGTTGGGGGTTAAGGATTGTACCCCCTGATGCATCAACGTAGATTTTCATAAGCAGCTGATCTTTCCCATTTACATGGGATCATTCA-TTCTTTCTTCAGTCCGTAAAGTTTATGAATACAGATCACTTGGATAACTTCCAAGTACCATTTGAAAAATATGTTAATGTCTCATGGTCTCAGTGAGCACATTGCTGTCTAATAAAAAAATGGCTTACGATAAAAAAAAAA] [+] EMBL AU056543 [GAGCAAAGGTGGAGTTCATGCCCTCATCATATGCCATGCAGATTATGTCAAACTAAAAGCACTTGCAATATCAATAGCTGAGGAAATTGAGTTTCAGTTTGACTATAAAGATGTTGCACTAGCAAATGCGTCCAAGTCTAATTTGCATCTAATTAATATTTCAATTGATGATGAGGGATATGAGGAAGAGGGAACAGATTGGACATCACGGATGGGTCTAAACCTCAAACATAGTTCCAAGATTAGGAAAGAAACACCAGAGAGTCAAGAACAGCCTCCTTTATCATTTTGGGGATTATTTTCCAAGCCATCACCTATTTCAGTTGTTTCAAACTTGAAATGGCTTTGCAGGAAAGCACGGGACTCCATATAAGGTCATTGGTTATGCTTCCAGCCCTGGATGTTGTGGCAACTCCAGACAAAGTTAAGCCCGCAGTTACAAAAACTCAGATAGACACTTCTGGAAATGCTCATGAAAACATTGGAAGTGAACAAACTCTGCAACAAGATTGTGTCCTGCAAGAATCCAATGATGTAGCTGATATGTGCAAGCGTCCCAAGGTGAATGATCAGGATGGACATTCTCTTATTAATATNCCAATTGCTGTTGCTGAATATCCTATGATGCATCAAGTTTGTGAGCGTCCAGTAAGTGTGAGTGCATGTGATGACCCTATCTGTTCATTTGATTCCC ] [+] EMBL AK110807 [ ACTTCTGGAAATGCTCATGAAAACATTGGAAGTGAACAAACTCTGCAACAAGATTGTGTCCTGCAAGAATCCAATGATGTAGCTGATATGTGCAAGCGTCCCAAGGTGAATGATCAGGATGGACATTCTCTTATTAATATTCCAATTGCTGTTGCTGAATATCCTATGATGCATCAAGTTTGTGAGCGTCCAGTAAGTGTGAGTGCATGTGATGACCCTATCTGTTCATTTGATTCCCAGGATTCACCCACAACTGTTGCAGTGTCAGCTGGCAAACCTACCAGAGAACAATGTGGTGCTGAATCAACTGAGTTGAGTACTGTAAAACAGTTCCTGGACAATGGGCTTATCGCTGAGGGAGGCAGCATGAACTTCATAAGTAATCATGAGCACTTAGAATCTGACAATGCAACTTCAGTGTGCAAAGATGAACAATTGCAAGTTCAACAAGATCAGTTGGCCATGGTACTTTGTAATAATCCCAACACAGAATTGGTTGCAGGAGAATTACATGGGGGGGCAGCATCATCAACCCTTGAAAATGAGGATAGCTGTGGTAATACGTCTTACTGTTCTGACACTGTATTAAAGAACAGCGAACCTGATACAGATGATCAACCTGAAACATGTGATCGTAGTGTTGTTCTTGTAACACCAAAGTCGAGCTGTGACCAGATGATTTCTAGCAGTGACAGAAGTTGCAGTCTGACCTTGGACTGCCCTGTCTCCACTGATGCTGCCTTTTCAAGCGAAAAGCTGTCTATGGCTCATGATTTGATGGGCAGAGAGTTGCAGGCAGTCCATAATTCAAAGGCTGAGGTTGTGGCCAGTTTGACTGATGTCAAGGGTGCTAAGCTCAATAGCATTCATACCACACAGTTACCTCATGAATCTCCAAGCAGTGATTTCATCATTTCAGAAGGTGCGCAATCTGCTTCAACAACTGCAATTCCCAGAAAAAATGGAACATCCATGCACACAGAGTCAAATTCAATTGATATTTTACTTGGAGTTCTAGCCGATGAATCTAAGGTCTCTTCTGGAAAGGATGAGGTTGGCAAAGCTTCCTTGACATTGATGACACTGGCTGGCAATGACCAATCTGCAGATGATGTAACTCAGGATGAAGTTGCAGAGATCACTGATCCGTCGCATGGCTTCTGCTCATCAGACATAGTGTCTAGAAGCATTGGAAGTTCAAACAGAACAAATATCATATGTTATGCCAGACGCAAACACAAAAGAAAGAGCGGATCTGAGTTCAATATTAATAGTCCCCAAAGC TTGGGGAGCTTTGTCCGCTCT CCAT GTGAAAGC TTGAGACCAAGGACTAGACCTGCGATTGTTGAAGACATGACAAACGAAACAAAAACTGCAGAAG ] [+] EMBL CF329972 [ AATCTCCAAGCAGTGATTTCATCATTTCAGAAGGTGCGCAATCTGCTTCAACAACTGCAATTCCCAGAAAAAATGGAACATCCATGCACACAGAGTCAAATTCAATTGATATTTTACTTGGAGTTCTAGCCGATGAATCTAAGGTCTCTTCTGGAAAGGATGAGGTTGGCAAAGCTTCCTTGACATTGATGACACTGGCTGGCAATGACCAATCTGCAGATGATGTAACTCAGGATGAAGTTGCAGAGATCACTGATCCGTCGCATGGCTTCTGCTCATCAGACATAGTGTCTAGAAGCATTGGAAGTTCAAACAGAACAAATATCATATGTTATGCCAGACGCAAACACAAAAGAAAGAGCGGATCTGAGTTCAATATTAATAGTCCCCAAAGC TTGGGGAGCTTTGTCCGCTCT CCAT GTGAAAGC TTGAGACCAAGGACTAGATCTGCGATTGTTGAAGACATGACAAACGAAACAAAAACTGCAGAAGCTTCAACTGCAAATAAGAGGAAGAAGGCAAAGGTGGAAGCATTT CAGTGTGA CATAGAATTTTGTGACATGACATTTGAGACTAAAGCTGAACTTCGTGCTCACCAACGCAATATCTGCACCGACGAGTCTTGTGGCAAGCGCTTCAGCTCTCACAAATACCTGAAG ] [+] EMBL C27006 [ ATATTTTACTTGGAGTTCTAGCCGATGAATCTAAGGTCTCTTCTGGAAAGNATGAGGTTGGCAAAGCTTCCTTGACATTGATGACACTGGCTGGCAATGACCAATCTGCAGATGATGTAACTCAGGATGAAGTTGCAGAGATCACTGATCCGTCGCATGGCTTCTGCTCATCAGACATAGTGTCTAGAAGCATTGNAAGTTCAAACAGAACAAATATCATATGTTATGCCAGANGCAAACACAAAAGAAAGAGCGGNTCTGAGTTCAATATTAATAGTCCCCAAAGCTTTGGGGAGCTTTGTCCGCTCTCCCATGGTGAAAGCTTTGAGACCAAGG ] [+] EMBL CF331799 [ TACTTGGAGTTCTAGCCGATGAATCTAAGGTCTCTTCTGGAAAGGATGAGGTTGGCAAAGCTTCCTTGACATTGATGACACTGGCTGGCAATGACCAATCTGCAGATGATGTAACTCAGGATGAAGTTGCAGAGATCACTGATCCGTCGCATGGCTTCTGCTCATCAGACATAGTGTCTAGAAGCATTGGAAGTTCAAACAGAACAAATATCATATGTTATGCCAGACGCAAACACAAAAGAAAGAGCGGATCTGAGTTCAATATTAATAGTCCCCAAAGC TTGGGGAGCTTTGTCCGCTCT CCAT GTGAAAGC TTGAGACCAAGGACTAGACCTGCGATTGTTGAAGACATGACAAACGAAACAAAAACTGCAGAAGCTTCAACTGCAAATAAGAGGAAGAAGGCAAAGGTGTAAGCATTT CAGTGTGA CATAGAATTTTGTGACATGACATTTGAGACTAAAGCTGAACTTCGTGCTCACCAACGCAATATCTGCACCGACGAGTCTTGTGGCAAGCGCTTCAGCTCTCACAAATACCTGAAGCGTCATCAGTGTGTACA CAGAGATGAGAGGCCATTCAA ] [+] EMBL AU056544 [ nnAGAGGAAGAAGNCAAAGGTGGAACCATTTCCAGTGTGACCATAGAATTTTGTGACATGACATTTGAGACTNAAGCTGAACTTCGTGCTCACCAACGCAATATCTGCACCGACGAGTCTTGTGGCAAGCGCTTCAGCTCTCACAAATACCTGAAGCGTCANCAGTGTGTACACCAGAGATGAGAGGCCATTCAAATGCCCCTGGGATGGTTGTCCAATGACTTTCAAGTGGTTGTGGGCGCAAACTGAGCATATCAGAGTCCATACAGGCGAGCGACCGTACAAGTGCTCGGCTCCTGACTGTGGCCAGAGTTTCAGATATGTCTCAGATTATAGTCGCCATAGAAAGAAGTTTAATCATTATTGATAGGTTGCCACTTTTCATGTTACTGATGAGTGATCACAGCTGGGGGCAAAAGCTCTAGCTGTTGAGGCCATGCTTGTTGTACCAGATCACGTATTTAACCA CCTGACGTCTGATAGGCCTAGTGTTTGTTCCTTCGTTAGCAATGTGTTTAGTGTAGAAAGTAGAGAAATAGTTGGGGGTTAAGGATTGTACCCCCTGATGCATCAACGTAGATTTTCATAAGCAGCTGATCTTTCCCATTTACATGGGATCATTCA TTCTTTCTTCAGTCCGTAAAGTTTATGAATACAGATCACTTGGATAACTTCCAAGTACNNTTTGAAAAAaaaaaaaaa ] [-] EMBL CF329973 [ TGTGTACA CAGAGATGAGAGGCCATTCAAATGCCCCTGGGATGGTTGTCCAATGACTTTCAAGTGGTTGTGGGCGCAAACTGAGCATATCAGAGTCCATACAGGCGAGCGACCGTACAAGTGCTCGGCTCCTGACTGTGGCCAGAGTTTCAGATATGTCTCAGATTATAGTCGCCATAGAAAGAAGTTTAATCATTATTGATAGGTTGCCACTTTTCATGTTACTGATGAGTGATCACAGCTGGGGGCAAAAGCTCTAGCTGTTGAGGCCATGCTTG TGTACCAGATCACGTATTTAACCA CCTGACGTCTGATAGGCCTAGTGTTTGTTCCTTCGTTAGCAATGTGTTTAGTGTAGAAAGTAGAGAAATAGTTGGGGGTTAAGGATCGTACCCCCTGATGCATCAACGTAGATTTTCATAAGCAGCTGATCTTTCCCATTTACATGGGATCATTCA TTCTTTCTTCAGTCCGTAAAGTTTATGAATACAGATCACTTGGATAACTTCCAAGTACCATTTGAAAAATGTGTTAATGTCTCATGGTCTCAGTGAGCACATTGCTGTCTAAAAAAAAAA ] [-] EMBL CF331798 [ GTACA CAGAGATGAGAGGCCATTCAAATGCCCCTGGGATGGTTGTCCAATGACTTTCAAGTGGTTGTGGGCGCAAACTGAGCATATCAGAGTCCATACAGGCGAGCGACCGTACAAGTGCTCGGCTCCTGACTGTGGCCAGAGTTTCAGATATGTTTCAGATTATAGTCGCCATAGAAAGAAGTTTAATCATTATTGATAGGTTGCCACTTTTCATGTTACTGATGAGTGATCACAGCTGGGGGCAAAAGCTCTAGCTGTTGAGGCCATGCTTGTTGTACCAGATCACGTATTTAACCA CCTGACGTTTGATAGGCCTAGTGTTTGTTCCTTCGTTAGCAATGTGTTTAGTGTAGAAAGTAGAGAAATAGTTGGGGGTTAAGGATTGTACCCCCTGATGCATCAACGTAGATTTTCATAAGCAGCTGATCTTTCCCATTTACATGGGATCATTCA TTCTTTTTTCAGTCCGTAAAGTTTATGAATACAGATCACTTGGATAACTTCCAAGTACCATTTGAAAAAaa ] [+] EMBL BQ909111 [ TCAGAGTCCATACAGGCGAGCGACCGTACAAGTGCTCGGCTCCTGACTGTGGCCAGAGTTTCAGATATGTCTCAGATTATAGTCGCCATAGAAAGAAGTTTAATCATTATTGATAGGTTGCCACTTTTCATGTTACTGATGAGTGATCACAGCTGGGGGCAAAAGCTCTAGCTGTTGAGGCCATGCTTGTTGTACCAGATCACGTATTTAACCACCCTGACGTATGATAGGCCTAGTGTTTGTTCCTTCGTTAGCAATGTGTTTAGTGTAGAAAGTAGAGAAATAGTTGGGGGTTAAGGATTGTACCCCCTGATGCATCAACGTAGATTTTCATAAGCAGCTGATCTTTCCCATTTACATGGGATCATTCACTTCTTTCTTCAGTCCGTAAAGTTTATGAATACAGATCACTTGGATAACTTCCAAGTACCATTTGAAAAATATGTTGATGTCTCATGGTCTCAGTGAGCACATTGCTGTCTAATAATAATATGGCTTACGATAAAAAAAAAA] [+] EMBL AU093246 [ atcCAGAGTCCATACAGGCGNGCGACCGTANAAGTGCTCGGCTCCTGACTGTGGCCAGAGTTTCAGATNTGTCNCAGATTATAGTCGCCATAGAAAGAAGTTTAATCATTATTGATAGGTTGCCACTTTTCATGTTACTGATGAGTGATCACAGCTGGGGGCAAAAGCTCTAGCTGTTGAGGCCATGCTTGTTGTACCAGATCACGTATTTAACCA CCTGACGTCTGATAGGCCTAGTGTTTGTTCCTTCGTTAGCAATGTGTTTAGTGTAGAAAGTAGAGAAATAGTTGGGGGTTAAGGATTGTACCCCNTGATGCATCAACGTAGATTTTCATAAGCAGCTGATCTTTCCCATTTACATGGGATCATTCA TTCTTTCTTCAGTCCGTAAAGTTTATGAATACAGATCACTTGGATAACTTCCAAGTACCATTTGAAAAATGTGTTAATGTCTCATGGTCTCAGTGAGCACATTGCTGTCTAATAAAAAAAa ] [-] EMBL AU225123 [ ccgctGCAATGTGTTTAGTGTAGAAAGTAGAGAAATAGTTGGGGGTTAAGGATTGTACCCCCTGATGCATCAACGTAGATTTTCATAAGCAGCTGATCTTTCCCATTTACATGGGATCATTCA TTCTTTCTTCAGTCCGTAAAGTTTATGAATACAGATCACTTGGATAACTTCCAAGTACCATTTGAAAAATGTGTTAATGTCTCATGGTCTCAGTGAGCACATTGCTGTCTAATAATAATATGGagcggc ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||