|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2725 fasta sequence
[TCCCTCTCCCTCTCTCTCTCTCTCTCTAGCCTCCGCCTCGCCGCGCCTCGCCGCCGCTAGGGGGAGAAGCGGTGGCGGAGAGGGCCGCGTCCTCCTCCATTCCGCAGGTACACCCTCTCTCTCCATCTCTGCTAGCGGCTAGCTTCGTCTTCTTGCTGATGCTGCACCCTCTGATCTGTGCAGGGGGTGGTGGTGGAATCCTGTCAAGAACCGGGGTTGTTGGGAATTTGGGAATTTAGGGCTCCGCAATTTGGAGGAAGGTGAGGCGATTTTTTTTATCTGCGGGGAATTTCTGCAGTGGGGGTGGTTAGATTGTGCTGTCAATGGTGGTGGTGGTGGTGGTTCGATGAACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGATCACCGTAAGCGCCTCGATTACGATGCGGTCTTCGCGGGTTACAGCGCACGCCGTGTATCTGGATTATCCTACCAGAACCGAGCAGAAGAATGGGGGTAATTTGGTGGTGATGCGGCCTGACCGACGACGGCCTAGGGATGATTTCTTCAAGGGTGAGGGTGGTGGTGGTAGTCTTGTAGTTGTGCAGCCAGACCGAGACCGACGGCCGCAGGATGATTTTGGGAGGGCGGCCGCAGATTCTGAGAAGGATGTATCACCCATCCATGCTAAGCCGAGGAAGCCATTGGACCAGAACCCCGAGGGAATGGATGTGGCAGGTTTCTCAAAACATGGAGGAAAGTGCTATGCTGACAACCTTCGCAGGTACTGTAACAGCGGGAAGCTCATCCAGGCCTGCTGTGTGATTGATGAGATGGTGCTCCATGGCCAGATTCCGGAGACTAAGTGCTGCGTTAGGATAATCCGCGGGCTCGTTAAAACCGGCAAGGCAAACAAAGCTAGGCATGTTCTTGAGGTTATGGTGCTTTCGGGTGGGGTTCCGGACACCATCAGCTGCAACATGTTGATCGCGCAGCTTTGCCGTGGTGGGCAGCTGAGCTCAGCACTGCAGGTTCTGGAAGA-CATGAGATTCAGTGGTTGCTCTCCGAGCGGCATCACTTTTAACACTTTGATTAGGTGCATGTTCAATCAGCGTATGTA--TGACA-GGGCGATCTCCTTTTGGAAAGAACAGTTGAGGTTAGGTTGGCCACCATATGAGATGACAAGCACCTTGCTTGTTGATCTTGTTTGCAAGAATTGTGGCCCTCAGAAGGCCTTGGAAGTCTTGGATGAACTTTCTTTGGAAGGATGTCAACCAGATGTCGTCACCTATAATGCTCTCATCAGTGCATCATGCAAGGCTGGCAGGCTGAATGATGCAAAGTTCATCTTAACTCGTCTTGCTGCTGAAGGGCTTGAACCAAATGGTACAACCTACTGCATCTTACTCCATGCCCTCTGCAACATGAGAAGGTGGGATGAAGTATGCGATTTGCTTGAAGACATGAACCAGGTGAATCGTGATCCTGATGTTACAACCTACAATATTTTTATCAATTACTTTTGTAAGTATGGGCATCTGGATCAGGCAATTGATGTGTTGGAGAGGATGGTTATCAACAATTGTTCTCCTGATATTGTGACCTGCAACACACTCCTGAATGCCATCTCCAAAAAGGGTATGGTTGAGGAAGCTCTTGGGATTGCTCGCTGCATCAGAGAAAACGGATACAAGTTGGTTCTCATCACATACAATACCCTCATAGATGCTTTAGCAAAGAAGGCTGAAGTTAAGAAAGCTATGGTTCTGTTTGATGAGATGCTTAGTGACGGGATCAGCCCCGATGACATCACATATGGTTCACTTGTCATGGGTTTTTGTAAGAAAGACATGGCTGATGAGGCCCTGGACCTTTTAAATCAGATGCTCACTCTAGGCTTTGAAGTTAAAACAACTACCTTTGTCATGGTGATCCAGGCATTATGTAGAGATGGTAAAGTGGAAGCTGCTGCTGAAATAACTAAAGTAATGTTATCAAAAAATAGTATCCCCGGGAATTCATTGTGTTCATCCATAGTCACAAAAGTTGCCAAATCAGGCTGGAATAAAGAGGCACAGATGCTCCACCAGAAGTTAGTTGAGTGTGAGATCCTTAAAGAAGATGCTGAAGTTATTTTAAGCAGCTAGTAGCTGGAGTATAAGATTGTTATTTAGTAGCATGAAACATGCAGCTTCTCAGCTAATCAGCAGATAAATTCTGGAAGTTGTAGATAGTGTCCTGGAAGAGGCATCCTGACGAGTGGGTGAGCCGGTTAACCAAGACTGTACCCCATTGTTGCTAATGAAATGTGACCCTATCTTATAATCTACTACCTCCGTTTCAGTTTATAAAACTTTCTAGCATTGCCCACATTCATATAGATGTTAATGAATCTAGGCGCGCGCGCGCGCACACATATATATATATATATATATTCATTAACATATATATAAATATGGGCAATGCTAAAAAGTCTTATAATATGAAACGGAGGAAGTACTACTTACGCTACTGCGACAAACAAATTAAATCTCAATGGAAGAGGCATTGTGGATGTCACTTCGCATGGCATTATGGCCCTTGTAACCACATTACGACATCGTCGTTAAGCAGGATAGATTAGCATATTCTGGATTAGCGGTAGAGTTCCCCTAATGTGTTTAGGTGCAGCTTGATTCTTGAATTCGTAATCTCTCTATTTATTTATTTATATATATAAGTGAAGC]
[+] EMBL AK103437 [TCCCTCTCCCTCTCTCTCTCTCTCTCTAGCCTCCGCCTCGCCGCGCCTCGCCGCCGCTAGGGGGAGAAGCGGTGGCGGAGAGGGCCGCGTCCTCCTCCATTCCGCAGGTACACCCTCTCTCTCCATCTCTGCTAGCGGCTAGCTTCGTCTTCTTGCTGATGCTGCACCCTCTGATCTGTGCAGGGGGTGGTGGTGGAATCCTGTCAAGAACCGGGGTTGTTGGGAATTTGGGAATTTAGGGCTCCGCAATTTGGAGGAAGGTGAGGCGATTTTTTTTATCTGCGGGGAATTTCTGCAGTGGGGGTGGTTAGATTGTGCTGTCAATGGTGGTGGTGGTGGTGGTTCGATGAACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGATCACCGTAAGCGCCTCGATTACGATGCGGTCTTCGCGGGTTACAGCGCACGCCGTGTATCTGGATTATCCTACCAGAACCGAGCAGAAGAATGGGGGTAATTTGGTGGTGATGCGGCCTGACCGACGACGGCCTAGGGATGATTTCTTCAAGGGTGAGGGTGGTGGTGGTAGTCTTGTAGTTGTGCAGCCAGACCGAGACCGACGGCCGCAGGATGATTTTGGGAGGGCGGCCGCAGATTCTGAGAAGGATGTATCACCCATCCATGCTAAGCCGAGGAAGCCATTGGACCAGAACCCCGAGGGAATGGATGTGGCAGGTTTCTCAAAACATGGAGGAAAGTGCTATGCTGACAACCTTCGCAGGTACTGTAACAGCGGGAAGCTCATCCAGGCCTGCTGTGTGATTGATGAGATGGTGCTCCATGGCCAGATTCCGGAGACTAAGTGCTGCGTTAGGATAATCCGCGGGCTCGTTAAAACCGGCAAGGCAAACAAAGCTAGGCATGTTCTTGAGGTTATGGTGCTTTCGGGTGGGGTTCCGGACACCATCAGCTGCAACATGTTGATCGCGCAGCTTTGCCGTGGTGGGCAGCTGAGCTCAGCACTGCAGGTTCTGGAAGA CATGAGATTCAGTGGTTGCTCTCCGAGCGGCATCACTTTTAACACTTTGATTAGGTGCATGTTCAATCAGCGTATGTA TGACA GGGCGATCTCCTTTTGGAAAGAACAGTTGAGGTTAGGTTGGCCACCATATGAGATGACAAGCACCTTGCTTGTTGATCTTGTTTGCAAGAATTGTGGCCCTCAGAAGGCCTTGGAAGTCTTGGATGAACTTTCTTTGGAAGGATGTCAACCAGATGTCGTCACCTATAATGCTCTCATCAGTGCATCATGCAAGGCTGGCAGGCTGAATGATGCAAAGTTCATCTTAACTCGTCTTGCTGCTGAAGGGCTTGAACCAAATGGTACAACCTACTGCATCTTACTCCATGCCCTCTGCAACATGAGAAGGTGGGATGAAGTATGCGATTTGCTTGAAGACATGAACCAGGTGAATCGTGATCCTGATGTTACAACCTACAATATTTTTATCAATTACTTTTGTAAGTATGGGCATCTGGATCAGGCAATTGATGTGTTGGAGAGGATGGTTATCAACAATTGTTCTCCTGATATTGTGACCTGCAACACACTCCTGAATGCCATCTCCAAAAAGGGTATGGTTGAGGAAGCTCTTGGGATTGCTCGCTGCATCAGAGAAAACGGATACAAGTTGGTTCTCATCACATACAATACCCTCATAGATGCTTTAGCAAAGAAGGCTGAAGTTAAGAAAGCTATGGTTCTGTTTGATGAGATGCTTAGTGACGGGATCAGCCCCGATGACATCACATATGGTTCACTTGTCATGGGTTTTTGTAAGAAAGACATGGCTGATGAGGCCCTGGACCTTTTAAATCAGATGCTCACTCTAGGCTTTGAAGTTAAAACAACTACCTTTGTCATGGTGATCCAGGCATTATGTAGAGATGGTAAAGTGGAAGCTGCTGCTGAAATAACTAAAGTAATGTTATCAAAAAATAGTATCCCCGGGAATTCATTGTGTTCATCCATAGTCACAAAAGTTGCCAAATCAGGCTGGAATAAAGAGGCACAGATGCTCCACCAGAAGTTAGTTGAGTGTGAGATCCTTAAAGAAGATGCTGAAGTTATTTTAAGCAGCTAGTAGCTGGAGTATAAGATTGTTATTTAGTAGCATGAAACATGCAGCTTCTCAGCTAATCAGCAGATAAATTCTGGAAGTTGTAGATAGTGTCCTGGAAGAGGCATCCTGACGAGTGGGTGAGCCGGTTAACCAAGACTGTACCCCATTGTTGCTAATGAAATGTGACCCTATCTTATAATCTACTACCTCCGTTTCAGTTTATAAAACTTTCTAGCATTGCCCACATTCATATAGATGTTAATGAATCTAGGCGCGCGCGCGCGCACACATATATATATATATATATATTCATTAACATATATATAAATATGGGCAATGCTAAAAAGTCTTATAATATGAAACGGAGGAAGTACTACTTACGCTACTGCGACAAACAAATTAAATCTCAATGGAAGAGGCATTGTGGATGTCACTTCGCATGGCATTATGGCCCTTGTAACCACATTACGACATCGTCGTTAAGCAGGATAGATTAGCATATTCTGGATTAGCGGTAGAGTTCCCCTAATGTGTTTAGGTGCAGCTTGATTCTTGAATTCGTAATCTCTCTATTTATTTATTTATATATATAAGTGAAGC]
[+] EMBL AU092001 [ TGTGCTGTCAATGGTGGTGGTGGTGGTGGTTCGATGAACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGATCACCGTAAGCGCCTCGATTACGATGCGGTCTTCGCGGGTTACAGCGCACGCCGTGTATCTGGATTATCCTACCAGAACCGAGCAGAAGAATGGGGGTAATTTGGTGGTGATGCGGCCTGACCGACGACGGCCTAGGGATGATTTCTTCAAGGGTGAGGGTGGTGGTGGTAGTCTTGTAGTTGTGCAGCCAGACCGAGACCGACGGCCGCAGGATGATTTTGG ]
[-] EMBL BI809232 [ GAGAAGGATGTATCACCCATCCATGCTAAGCCGAGGAAGCCATTGGACCAGAACCCCGAGGGAATGGATGTGGCAGGTTTCTCAAAACATGGAGGAAAGTGCTATGCTGACAACCTTCGCAGGTACTGTAACAGCGGGAAGCTCATCCAGGCCTGCTGTGTGATTGATGAGATGGTGCTCCATGGCCAGATTCCGGAGACTAAGTGCTGCGTTAGGATAATCCGCGGGCTCGTTAAAACCGGCAAGGCAAACAAAGCTAGGCATGTTCTTGAGGTTATGGTGCTTTCGGGTGGGGTTCCGGACACCATCAGCTGCAACATGTTGATCGCGCAGCTTTGCCGTGGTGGGCAGCTGAGCTCAGCACTTGAGGTTCTGGAAGACCATGAGATTCAGGGGTTG TCTCCGAGCGGGATCAC TTTAACACTTTGATTAGGTGCATGTTCAATCAGCGTATGTACTTGACAGGGGCGATCTC TTTGGAAAGAACAGTTGAGGTTAGG TGG CACCATATGAGATGACAGGCAC TG TTGTTGATCTTGGTTG AAGAATGGTGG CTCAGAAGG CTTGGAAGTCTTGGGT AACTTTCTTg ]
consensusID : consensus_12800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 743 fasta sequence
[AAATCAGGCTGGAATAAAGAGGCACAGATGCTCCACCAGAAGTTAGTTGAGTGTGAGATCCTTAAAGAAGATGCTGAAGTTATTTTAAGCAGCTAGTAGCTGGAGTATAAGATTGTTATTTAGTAGCATGAAACATGCAGTTTTTCAGTTAATCAGCAGATAAATTTTGGAAGTTGTGGATAGTGTCCTGGAAGAGGCATCCTGACGAGTGGGTGAGCCGGTTAACCAAGACTGTCCCCCATTGTTGTTAATGAAATGTGCCCCTATCTTATAATTTACTCCCTCCGTTTCAGGTTATAAAACTTTTTAGCATTGCCCCCATTCATATAGATGTTAATGAATTTAGGCGCGCGGGGGGGCGCCCATATATATATATATATATATTCA-TTAACATATATATATATATATATTCATTACCATATATATATAAATATTGGCAA-TGCTAAAAAGTCTTATAATATGAAACGGAGGAAGTATTACTTACGTTACTGCGGCCAAACAAATTAAATCTCA-ATGGAAGAGGCA-TTGTGGATGTCACTTCGCATGGCA-TGATGGCCCTTGTAACCCCA-TTACGACATCGTCGTTAAGCAGGATAGATTAGCATATTTTGGATTAGCGGTAGAGTTCCCCTAATGTGTTTAGGTGCAGCTTGATTCTTGAATTCGTAATCTCTCTATTTATTTATTTATATATATAAGAGAAGCTGTTGGTTGCAAAAAAAAAAAAAAAAAAAAATAAAAGGA]
[-] EMBL CB630038 [AAATCAGGCTGGAATAAAGAGGCACAGATGCTCCACCAGAAGTTAGTTGAGTGTGAGATCCTTAAAGAAGATGCTGAAGTTATTTTAAGCAGCTAGTAGCTGGAGTATAAGATTGTTATTTAGTAGCATGAAACATGCAGTTTTTCAGTTAATCAGCAGATAAATTTTGGAAGTTGTGGATAGTGTCCTGGAAGAGGCATCCTGACGAGTGGGTGAGCCGGTTAACCAAGACTGTCCCCCATTGTTGTTAATGAAATGTGCCCCTATCTTATAATTTACTCCCTCCGTTTCAGGTTATAAAACTTTTTAGCATTGCCCCCATTCATATAGATGTTAATGAATTTAGGCGCGCGGGGGGGCGCCCATATATATATATATATATATTCA TTAACATATATATATATATATATTCATTACCATATATATATAAATATTGGCAA TGCTAAAAAGTTTTATAATATGAAACGGAGGAAGTATTACTTACGTTACTG GGCCAAACAAATTAAATCTCA ATGGAAGAGGCA TTGTGGATGTCACTTCGCATGGCA TGATGGCCCTTGTAACCCCA TTACGACATCGTCGTTAAGCAGGATAGATTAGCATATTTTGGATTAGCGGTAGAGTTCCCCTAATGTGTTTAGGTGCAGCTTGATTCTTGAATTCGTAATCTCTCTATTTATTTATTTATATATATAAGAGGGGCTGTTGGTTGCAAAAAAAAAAAAAAAAAAAAATAAAAG ]
[-] EMBL CB635267 [ TAGTTGAGTGTGAGATCCTTAAAGAAGATGCTGAAGTTATTTTAAGCAGCTAGTAGCTGGAGTATAAGATTGTTATTTAGTAGCATGAAACATGCAGCTTTTCAGTTAATCAGCAGATAAATTCTGGAAGTTGTGGATAGTGTCCTGGAAGAGGCATCCTGACGAGTGGGTGAGCCGGTTAACCAAGACTGTCCCCCATTGTTGTTAATGAAATGTGCCCCTATCTTATAATTTACTCCCCCCGTTTCAGGTTATAAAACTTTTTAGCATTGCCCCCATTCATATAGATGTTAATGAATTTAGGCGCGCGCGCGTGCGCCCATATATATATATATATATATTCA TTACCATATATATATATATATATTCATTACCATATATATATAAATATTGGCAA TGCTAAAAAGTCTTATAATATGAAACGGAGGAAGTATTACTTACGTTACTGC GCCAAACAAATTAAATCTCA ATGGAAGAGGCA TTGTGGATGTCACTTCGCATGGCA TGATGGCCCTTGTACCCCCA TTACGACATCGTCGTTAAGCAGGATAGATTAGCATATTTTGGATTAGCGGTAGAGTTCCCCTAATGTGTTTAGGTGCAGCTTGATTCTTGAATTCGTAATCTCTCTATTTATTTATTTATATATATAAGGGAAGCTGTTGGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAGGA]
[+] EMBL BI812406 [ CGCACATATATATATATATATATATTCAGTTAACATATATATATATATATATTCATTAACATATATATATAAATATTGGCAATTGCTAAAAAGTCTTATAATATGAAACGGAGGAAGTACTACTTACGCTACTGCGACCAAAC AATTAAATCTCACATGGAAGAGGCACTTGTGGATGTCACTTCGCATGGCACTGATGGCCCTTGTAACCACACTTACGACATCGTCGTTAAGCAGGATAGATTAGCATATTCTGGATTAGCGGTAGAGTTCCCCTAATGTGTTTAGGTGCAGCTTGATTCTTGAATTCGTAATCTCTCTATTTATTTATTTATATATATAAGTGAAGCTGTTGGTTGCAAAAAAA ]
consensusID : consensus_12800#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 720 fasta sequence
[TCTCTCTCT---CTCTCGCCTC----CGCCTCGCCGCCGCTAGGGGGAGAAGCGGTGGCGGAGAGGGCCGCGTCCTCCTCCATTCCGCAGGGGGTGGTGGTGGAATCCTGTCAAGAACCGGGGTTGTTGGGAATTTGGGAATTTAGGGCTCTGCAATTTGGAGGAAGGTGAGGCGATTTTTTTTATCTGCGGGGAATTTCTGCAGTGGGGGTGGTTAGATTGTGCTGTCAATGGTGGTGGTGGTGGTGGTTCGATGAACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGATCACCGTAAGCGCCTCGATTACGATGCGGTCTTCGTGGGTTACAGTGCACGCCGTGTATCTGGATTATCCTACCAGAACCGAGCAGAAGAATGGGGGTAATTTGGTGGTGATGCGGCCTGACCGACGACGGCCTAGGGATGATTTCTTCAAGGGTGAGGGTGGTGGTGGTAGTCTTGTAGTTGTGCAGCCAGACCGAGACCGACGGCTGCAGGATGATTTTGGGAGGGCGGCCGCAGATTCTGAGAAGGATGTATCACCCATCCATGCTAAGCCGAGGAAGCCATTGGACCAGAACCCCGAGGGAATGGATGTGGCAGGTTTCTCAAAACATGGAGGAAAGTGCTATGCTGACAACCTTCGCAGGTACTGTAACAGCTGGAAGCTCATCCATGCCTGCTGT]
[+] EMBL AU070791 [TCTCTCTCTAGCCTC CGCCTCGCCGCGCCTCGCCGCCGCTAGGGGGAGAAGCGGTGGCGGAGAGGGCCGCGTCCTCCTCCATTCCGCA GGGGTGGTGGTGGAATCCTGTCAAGAACCGGGGTTGTTGGGAATTTGGGAATTTAGGGCTCTGCAATTTGGAGGAAGGTGAGGCGATTTTTTTTATCTGCGGGGAATTTCTGCAGTGGGGGTGGTTAGATTGTGCTGTCAATGGTGGTGGTGGTGGTGGTTCGATGAACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGATCACCGTAAGCGCCTCGATTACGATGCGGTCTTCGCGGGTTACAGCGC ]
[+] EMBL CB629900 [ CTCTCTCT CTCTAGCCTC CGCCTCGCCGCCGCTAGGGGGAGAAGCGGTGGCGGAGAGGGCCGCGTCCTCCTCCATTCCGCAGGGGGTGGTGGTGGAATCCTGTCAAGAACCGGGGTTGTTGGGAATTTGGGAATTTAGGGCTCTGCAATTTGGAGGAAGGTGAGGCGATTTTTTTTATCTGCGGGGAATTTCTGCAGTGGGGGTGGTTAGATTGTGCTGTCAATGGTGGTGGTGGTGGTGGTTCGATGAACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGATCACCGTAAGCGCCTCGATTACGATGCGGTCTTCGTGGGTTACAGTGCACGCCGTGTATCTGGATTATCCTACCAGAACCGAGCAGAAGAATGGGGGTAATTTGGTGGTGATGCGGCCTGACCGACGACGGCCTAGGGATGATTTCTTCAAGGGTGAGGGTGGTGGTGGTAGTCTTGTAGTTGTGCAGCCAGACCGAGACCGACGGCTGCATGATGATTTTGGGAGGGCGGCCGCAGATTCTGAGAAGGATGTATCACCCATCCATGCTAAGCCGAAGAAGCCATTGGACCATAACCCCGAGGGAATGGATGTGGCAGGTTTCTCAAAACATGGAGGAAAGTGCTA ]
[+] EMBL CB635266 [ T CTCTACCCTC CGCCTCGCCGCCGCTAGGGGGAGAAGCGGTGGCGGAGAGGGCCGCGTCCTCCTCCATTCCGCAGGGGGTGGTGGTGGAATCCTGTCAAGAACCGGGGTTGTTGGGAATTTGGGAATTTAGGGCTCTGCAATTTGGAGGAAGGTGAGGCGATTTTTTTTATCTGCGGGGAATTTCTGCAGTGGGGGTGGTTAGATTGTGCTGTCAATGGTGGTGGTGGTGGTGGTTCGATGAACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGATCACCGTAAGCGCCTCGATTACGATGCGGTCTTCGTGGGTTACAGTGCACGCCGTGTATCTGGATTATCCTACCAGAACCGAGCAGAAGAATGGGGGTAATTTGGTGGTGATGCGGCCTGACCGACGACGGCCTAGGGATGATTTCTTCAAGGGTGAGGGTGGTGGTGGTAGTCTTGTAGTTGTGCAGCCAGACCGAGACCGACGGCTGCAGGATGATTTTGGGAGGGCGGCCGCAGATTCTGAGAAGGATGTATCACCCATCCATGCTAAGCCGAGGAAGCCATTGGACCAGAACCCCGAGGGAATGGATGTGGCAGGTTTCTCAAAACATGGAGGAAAGTGCTATGCTGACAACCTTCGCAGGTACTGTAACAGCTGGAAGCTCATCCATGCCTGCTGT]
[+] EMBL CB630037 [ T CTCTCCCTTC CGCCTCGCCGCCGCTAGGGGGAGAAGCGGTGGCGGAGAGGGCCGCGTCCTCCTCCATTCCGCAGGGGGTGGTGGTGGAATCCTGTCAAGAACCGGGGTTGTTGGGAATTTGGGAATTTAGGGCTCTGCAATTTGGAGGAAGGTGAGGCGATTTTTTTTATCTGCGGGGAATTTCTGCAGTGGGGGTGGTTAGATTGTGCTGTCAATGGTGGTGGTGGTGGTGGTTCGATGAACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGATCACCGTAAGCGCCTCGATTACGATGCGGTCTTCGTGGGTTACAGTGCACGCCGTGTATCTGGATTATCCTACCAGAACCGAGCAGAAGAATGGGGGTAATTTGGTGGTGATGCGGCCTGACCGACGACGGCCTAGGGATGATTTCTTCAAGGGTGAGGGTGGTGGTGGTAGTCTTGTAGTTGTGCAGCCAGACCGAGACCGACGGCTGCAGGATGATTTTGGGAGGGCGGCCGCAGATTCTGAGAAGGATGTATCACCCATCCATGCTAAGCCGAGGAAGCCATTGGACCAGAACCCCGAGGGAATGGATGTGGCAGGTTTCTCAAAACATGGAGGAAAGTGCTATGCTGACAACCTTCGCAGGTACTG ]
consensusID : consensus_12800#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[TCCCAGAGTGATATAATTTGTTCGCCGCGGGCGCGGGAGGAGCACCCCCCGCGCCTCGGCATATGAGANACTTGCGCCGGGCCANTANNTANANATANGCGNGCNCNCATATATATATANTATATATATATTCATTANNCATATATATATATATATATATTCATTAACATATATATATATAATATTGGCAATGCTAAAAATTCTTATAATATGAAACGGAGGAAGTACTACTTACGCTACTGCGACAAACAAATTAAATCTCAATGGAAGAGGCATTGTGGATGTCACTTCGCATGGCATGATGGCCCTTGTAACCACATTACGACATCGTCGTTAAGCAGGATAGATTAGCATATTCTGGATTAGCGGTAGAGTTCCCTAATGTGTTTAGGTGCAGCTTGATTCTTGAATTCGTAATCTCTCTATTTATTTATATATATAAGTGAAGCTGTTGGTTGCATATGTGTGTTTGAATTGAATGATGATGATTAAGTGTTTATATGGCACGGTTGAAAGGCAAAAAAGACACTTGAAATATATATAAGTGAAGCTGTTGGTTGCAAAAAAAAGAAA]
[-] EMBL CA761075 [TCCCAGAGTGATATAATTTGTTCGCCGCGGGCGCGGGAGGAGCACCCCCCGCGCCTCGGCATATGAGANACTTGCGCCGGGCCANTANNTANANATANGCGNGCNCNCATATATATATANTATATATATATTCATTANNCATATATATATATATATATATTCATTAACATATATATATATAATATTGGCAATGCTAAAAATTCTTATAATATGAAACGGAGGAAGTACTACTTACGCTACTGCGACAAACAAATTAAATCTCAATGGAAGAGGCATTGTGGATGTCACTTCGCATGGCATGATGGCCCTTGTAACCACATTACGACATCGTCGTTAAGCAGGATAGATTAGCATATTCTGGATTAGCGGTAGAGTTCCCTAATGTGTTTAGGTGCAGCTTGATTCTTGAATTCGTAATCTCTCTATTTATTTATATATATAAGTGAAGCTGTTGGTTGCATATGTGTGTTTGAATTGAATGATGATGATTAAGTGTTTATATGGCACGGTTGAAAGGCAAAAAAGACACTTGAAATATATATAAGTGAAGCTGTTGGTTGCAAAAAAAAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TCCCTCTCCCTCTCTCTCTCTCTCTCTAGCCTCCGCCTCGCCGCGCCTCGCCGCCGCTAG 60
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GGGGAGAAGCGGTGGCGGAGAGGGCCGCGTCCTCCTCCATTCCGCAGGTACACCCTCTCT 120
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 CTCCATCTCTGCTAGCGGCTAGCTTCGTCTTCTTGCTGATGCTGCACCCTCTGATCTGTG 180
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 CAGGGGGTGGTGGTGGAATCCTGTCAAGAACCGGGGTTGTTGGGAATTTGGGAATTTAGG 240
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GCTCCGCAATTTGGAGGAAGGTGAGGCGATTTTTTTTATCTGCGGGGAATTTCTGCAGTG 300
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GGGGTGGTTAGATTGTGCTGTCAATGGTGGTGGTGGTGGTGGTTCGATGAACATGGCGCG 360
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGAT 420
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 CACCGTAAGCGCCTCGATTACGATGCGGTCTTCGCGGGTTACAGCGCACGCCGTGTATCT 480
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GGATTATCCTACCAGAACCGAGCAGAAGAATGGGGGTAATTTGGTGGTGATGCGGCCTGA 540
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 CCGACGACGGCCTAGGGATGATTTCTTCAAGGGTGAGGGTGGTGGTGGTAGTCTTGTAGT 600
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TGTGCAGCCAGACCGAGACCGACGGCCGCAGGATGATTTTGGGAGGGCGGCCGCAGATTC 660
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TGAGAAGGATGTATCACCCATCCATGCTAAGCCGAGGAAGCCATTGGACCAGAACCCCGA 720
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GGGAATGGATGTGGCAGGTTTCTCAAAACATGGAGGAAAGTGCTATGCTGACAACCTTCG 780
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 CAGGTACTGTAACAGCGGGAAGCTCATCCAGGCCTGCTGTGTGATTGATGAGATGGTGCT 840
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 CCATGGCCAGATTCCGGAGACTAAGTGCTGCGTTAGGATAATCCGCGGGCTCGTTAAAAC 900
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 CGGCAAGGCAAACAAAGCTAGGCATGTTCTTGAGGTTATGGTGCTTTCGGGTGGGGTTCC 960
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GGACACCATCAGCTGCAACATGTTGATCGCGCAGCTTTGCCGTGGTGGGCAGCTGAGCTC 1020
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 AGCACTGCAGGTTCTGGAAGACATGAGATTCAGTGGTTGCTCTCCGAGCGGCATCACTTT 1080
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TAACACTTTGATTAGGTGCATGTTCAATCAGCGTATGTATGACAGGGCGATCTCCTTTTG 1140
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GAAAGAACAGTTGAGGTTAGGTTGGCCACCATATGAGATGACAAGCACCTTGCTTGTTGA 1200
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TCTTGTTTGCAAGAATTGTGGCCCTCAGAAGGCCTTGGAAGTCTTGGATGAACTTTCTTT 1260
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GGAAGGATGTCAACCAGATGTCGTCACCTATAATGCTCTCATCAGTGCATCATGCAAGGC 1320
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TGGCAGGCTGAATGATGCAAAGTTCATCTTAACTCGTCTTGCTGCTGAAGGGCTTGAACC 1380
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 AAATGGTACAACCTACTGCATCTTACTCCATGCCCTCTGCAACATGAGAAGGTGGGATGA 1440
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 AGTATGCGATTTGCTTGAAGACATGAACCAGGTGAATCGTGATCCTGATGTTACAACCTA 1500
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 CAATATTTTTATCAATTACTTTTGTAAGTATGGGCATCTGGATCAGGCAATTGATGTGTT 1560
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GGAGAGGATGGTTATCAACAATTGTTCTCCTGATATTGTGACCTGCAACACACTCCTGAA 1620
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TGCCATCTCCAAAAAGGGTATGGTTGAGGAAGCTCTTGGGATTGCTCGCTGCATCAGAGA 1680
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 AAACGGATACAAGTTGGTTCTCATCACATACAATACCCTCATAGATGCTTTAGCAAAGAA 1740
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GGCTGAAGTTAAGAAAGCTATGGTTCTGTTTGATGAGATGCTTAGTGACGGGATCAGCCC 1800
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 CGATGACATCACATATGGTTCACTTGTCATGGGTTTTTGTAAGAAAGACATGGCTGATGA 1860
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GGCCCTGGACCTTTTAAATCAGATGCTCACTCTAGGCTTTGAAGTTAAAACAACTACCTT 1920
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TGTCATGGTGATCCAGGCATTATGTAGAGATGGTAAAGTGGAAGCTGCTGCTGAAATAAC 1980
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 TAAAGTAATGTTATCAAAAAATAGTATCCCCGGGAATTCATTGTGTTCATCCATAGTCAC 2040
consensus_12800#2 ------------------------------------------------------------
consensus_12800#1 ----------AAATCAGGCTGGAATAAAGAGGCACAGATGCTCCACCAGAAGTTAGTTGA 50
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 AAAAGTTGCCAAATCAGGCTGGAATAAAGAGGCACAGATGCTCCACCAGAAGTTAGTTGA 2100
consensus_12800#2 ---------------------------------------------------------TCT 3
consensus_12800#1 GTGTGAGATCCTTAAAGAAGATGCTGAAGTTATTTTAAGCAGCTAGTAGCTGGAGTATAA 110
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GTGTGAGATCCTTAAAGAAGATGCTGAAGTTATTTTAAGCAGCTAGTAGCTGGAGTATAA 2160
consensus_12800#2 CTCTCTCTCTCGCCTCCGCCTCGCCGCCGCTAGGGGGAGAAGCGGTGGCGGAGAGGGCCG 63
consensus_12800#1 GATTGTTATTTAGTA-GCATGAAACATGCAGTTTTTCAGTTAATCAGCAGATAAATTTTG 169
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GATTGTTATTTAGTA-GCATGAAACATGCAGCTTCTCAGCTAATCAGCAGATAAATTCTG 2219
consensus_12800#2 CGTCCTCCTCCATTCCGCAGGGGGTGGTGGTGGAATCCTGTCAAGAACCGGGGTTGTTGG 123
consensus_12800#1 GAAGTTGTGGAT--AGTGTCCTGGAAGAGGCATCCTGACGAGTGGGTGAGCCGGTTAACC 227
consensus_12800#3 ------------------------------------------------------------
consensus_12800#0 GAAGTTGTAGAT--AGTGTCCTGGAAGAGGCATCCTGACGAGTGGGTGAGCCGGTTAACC 2277
consensus_12800#2 GAATTTGGGAATTTAGGGCTCTGCAATTTGGAGGAAGGTGAGGCGATTTTTTTTATCTGC 183
consensus_12800#1 AAGACTGTCCCCCATTGTTGTTAATGAAATGTGCCCCTATCTTATAATTTACTCCCTCCG 287
consensus_12800#3 -------TCCCAGAGTGATATAATTTGTTCGCCGCGGGCGCGGGAGGAGCACCCCCCGCG 53
consensus_12800#0 AAGACTGTACCCCATTGTTGCTAATGAAATGTGACCCTATCTTATAATCTACTACCTCCG 2337
consensus_12800#2 GGGGAATTTCTGCAGTGGGGGTGGTTAGATTGTGCTGTCAATGGTGG--TGGTGGTGGTG 241
* * * ** * * *
consensus_12800#1 TTTCAGGTTATAAAACTTTTTAGCATTGCCCCCATTCATATAGATGTTAATGAATTTAGG 347
consensus_12800#3 CCTCGGCATATGAGANACTTGCGCCGGGCCANTANNTANANA--------------TANG 99
consensus_12800#0 TTTCAGTTTATAAAACTTTCTAGCATTGCCCACATTCATATAGATGTTAATGAATCTAGG 2397
consensus_12800#2 GTTCGATGAACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGT 301
** * * * *
consensus_12800#1 CGCGCGGGGGGGCGCCCATATATATAT-ATATATATATTCATTAAC---ATATATATATA 403
consensus_12800#3 CGNGCN------CNCATATATATATANTATATATATATTCATTANNCATATATATATATA 153
consensus_12800#0 CGCGCG------CGCGCGCACACATAT------------------------ATATATATA 2427
consensus_12800#2 CGAATGGCTCTGCGCCGATCACCGTAA-----GCGCCTCGATTACGATGCGGTCTTCGTG 356
** * * ** * * *
consensus_12800#1 TAT-ATATTCATTACCATATATATATA-AATATTGGCAATGCTAAAAAGTCTTATAATA- 460
consensus_12800#3 TAT-ATATTCATTAACATATATATATATAATATTGGCAATGCTAAAAATTCTTATAATA- 211
consensus_12800#0 TAT-ATATTCATTAACATATATATA---AATATGGGCAATGCTAAAAAGTCTTATAATA- 2482
consensus_12800#2 GGTTACAGTGCACGCCGTGTATCTGGATTATCCTACCAGAACCGAGCAGAAGAATGGGGG 416
* * * * * * *** * ** ** * * * **
consensus_12800#1 TGAAACGGAGGAAGTATTACTTACGTTACTGCGGCCAAACAAATTAAATCTCAATGGAAG 520
consensus_12800#3 TGAAACGGAGGAAGTACTACTTACGCTACTGCGAC-AAACAAATTAAATCTCAATGGAAG 270
consensus_12800#0 TGAAACGGAGGAAGTACTACTTACGCTACTGCGAC-AAACAAATTAAATCTCAATGGAAG 2541
consensus_12800#2 TAATTTGGTGGTGATGCGGCCTGACCGACGACGGC-CTAGGGATGATTTCTTCAAGGGTG 475
* * ** ** * * * ** ** * * ** * *** * ** *
consensus_12800#1 AGGCATTGTGGATGTCACTTCGCATGGCATGATGGCCCTTGTAACCCCATTACGACATCG 580
consensus_12800#3 AGGCATTGTGGATGTCACTTCGCATGGCATGATGGCCCTTGTAACCACATTACGACATCG 330
consensus_12800#0 AGGCATTGTGGATGTCACTTCGCATGGCATTATGGCCCTTGTAACCACATTACGACATCG 2601
consensus_12800#2 AGG-GTGGTGGTGGTAGTCTTGTA-GTTGTGCAGCCAGACCGAGACCGACGGCTGCAGGA 533
*** * **** ** * * * * * * * * * * * **
consensus_12800#1 TCGTTAAGCAGGATAGATTAGCATATTTTGGATTAGCGGTAGAGTTC--CCCTAATGTGT 638
consensus_12800#3 TCGTTAAGCAGGATAGATTAGCATATTCTGGATTAGCGGTAGAGTTC--CC-TAATGTGT 387
consensus_12800#0 TCGTTAAGCAGGATAGATTAGCATATTCTGGATTAGCGGTAGAGTTC--CCCTAATGTGT 2659
consensus_12800#2 TGATTTTGGGAGGGCGGCC-GCAGATTCTGAGAAGGATGTATCACCCATCCATGCTAAGC 592
* ** * * * *** *** ** * *** * ** * * *
consensus_12800#1 TTAGGTGCAGCTTGATTCTTGAATTCGT---AATCTCTCTATTTATTTATTTATATATAT 695
consensus_12800#3 TTAGGTGCAGCTTGATTCTTGAATTCGT---AATCTCTCTATTTATTTAT----ATATAT 440
consensus_12800#0 TTAGGTGCAGCTTGATTCTTGAATTCGT---AATCTCTCTATTTATTTATTTATATATAT 2716
consensus_12800#2 CGAGGAAGCCATTGGACCAGAACCCCGAGGGAATGGATGTGGCAGGTTTCTCA-AAACAT 651
*** *** * * ** *** * * ** * * **
consensus_12800#1 AAGAGAAGCTGTTGGTTGCAAAAAAAAAAAAAAAAAAAAATAAAAGGA------------ 743
consensus_12800#3 AAGTGAAGCTGTTGGTTGCATATGTGTGTTTGAATTGAATGATGATGATTAAGTGTTTAT 500
consensus_12800#0 AAGTGAAGC--------------------------------------------------- 2725
consensus_12800#2 GGAGGAAAGTGCTA--TGCTGACAACCTTCGCAGGT--ACTGTAACAGCTGGAAGCTCAT 707
***
consensus_12800#1 ------------------------------------------------------------
consensus_12800#3 ATGGCACGGTTGAAAGGCAAAAAAGACACTTGAAATATATATAAGTGAAGCTGTTGGTTG 560
consensus_12800#0 ------------------------------------------------------------
consensus_12800#2 CCATGCCTGCTGT----------------------------------------------- 720
consensus_12800#1 -------------
consensus_12800#3 CAAAAAAAAGAAA 573
consensus_12800#0 -------------
consensus_12800#2 -------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||