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Oryza sativa
cluster # 12826 cluster # 12826       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12826#0 length = 1451 sequences # 8  
consensus_12826#1 length = 614 sequences # 3  

consensusID : consensus_12826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1451
fasta sequence
                              [GGGTGAGGAAGAGATTCCTCTTCCTTGCTGCCGCCAT-CGAAACCGCTCTTCTTCCCTGCTGCGGGGTGAGGGATGGAGCGCGTGAGGAGGGCTTCGCACGCCGGCTCTTGGTACACCAACAATGCCAGGAAACTGGATGAGGAAC-TTGAT-GGTTGGCTGAGGGC-TGCTGGTCTCACCAAGTCCCCTGATGTGAGGGCAGTAATTGCGCCCCATGCTGGCTATTCATACTCAGGGCGGTGTGCGGCTTATGCTTTTGGCAACATTGATCCAACTAACATTTCTCGGGTCTTCCTGTTAGGCCCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGTAATTGA-GGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAAAGTTTTTCAGGGACATAACGTAAAAGTTGTCCCTATCCTTGTTGGTGCCCTTAACTCCCAAAATGAAGCCATGTATGGGCAGTTGCTCTCTAAATATCTTGACGATCCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAG-GCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCA-GTACCTGCAAGAGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCATGCTGAAACA-TTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGGGACAGCA-GCGTGAGCTACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTCATATTTCTGGATACATTTACCCTAGCATCTACGAGCTGAATATTCTTTTTGGGGTTTGAGGCCTGCTTGATAGCGGTGGGGTTTTTTTTTTTTCGATATAGATTCTACAGCAGCAAGCTCAACAAGGCAACAACTATACCACTAGAAAAAAAAATACTAGCACAAACAACTAGTTACTCGCGGTAACAGTAAGCAAAAATCAGAAGAATATGGATAGCATGATTTCACTGAGATGCGAAGCTGATGTATTTCTCGAAATTCAAATCTTTAAGGGCATTATACCTCTTTGTTGAGTAGCTCATAAAGAGA]

[+] EMBL AK061379             [GGGTGAGGAAGAGATTCCTCTTCCTTGCTGCCGCCAT CGAAACCGCTCTTCTTCCCTGCTGCGGGGTGAGGGATGGAGCGCGTGAGGAGGGCTTCGCACGCCGGCTCTTGGTACACCAACAATGCCAGGAAACTGGATGAGGAAC TTGAT GGTTGGCTGAGGGC TGCTGGTCTCACCAAGTCCCCTGATGTGAGGGCAGTAATTGCGCCCCATGCTGGCTATTCATACTCAGGGCGGTGTGCGGCTTATGCTTTTGGCAACATTGATCCAACTAACATTTCTCGGGTCTTCCTGTTAGGCCCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGTAATTGA GGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAAAGTTTTTCAGGGACATAACGTAAAAGTTGTCCCTATCCTTGTTGGTGCCCTTAACTCCCAAAATGAAGCCATGTATGGGCAGTTGCTCTCTAAATATCTTGACGATCCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAG GCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCA GTACCTGCAAGAGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCATGCTGAAACA TTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGGGACAGCA GCGTGAGCTACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTCATATTTCTGGATACATTTAC                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF330333             [                       CTTGCTGCCGCCATCCCAAACCGCTCTTCTTCCCTGCTGCGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF330996             [                         TGCTGCCGCCAT CGAAACCGCTCTTCTTCCCTGCTGCGGGGTGAGGGATGGAGCGCGTGAGGAGGGCTTCGCACGCCGGCTCTTGGTACACCAACAATGCCAGGAAACTGGATGAGGAAC TTGAT GGTTGGCTGAGGGC TGCTGGTCTCACCAAGTCCCCTGATGTGAGGGCAGTAATTGCGCCCCATGCTGGCTATTCATACTCAGGGCGGTGTGCGGCTTATGCTTTTGGCAACATTGATCCAACTAACATTTCTCGGGTCTTCCTGTTAGGCCCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGTAATTGA GGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAAAGTTTTTCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK099389             [                                  CAT CGAAACCGCTCTTCTTCCCTGCTGCGGGGTGAGGGATGGAGCGCGTGAGGAGGGCTTCGCACGCCGGCTCTTGGTACACCAACAATGCCAGGAAACTGGATGAGGAAC TTGAT GGTTGGCTGAGGGC TGCTGGTCTCACCAAGTCCCCTGATGTGAGGGCAGTAATTGCGCCCCATGCTGGCTATTCATACTCAGGGCGGTGTGCGGCTTATGCTTTTGGCAACATTGATCCAACTAACATTTCTCGGGTCTTCCTGTTAGGCCCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGTAATTGA GGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAAAGTTTTTCAGGGACATAACGTAAAAGTTGTCCCTATCCTTGTTGGTGCCCTTAACTCCCAAAATGAAGCCATGTATGGGCAGTTGCTCTCTAAATATCTTGACGATCCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAG GCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCA GTACCTGCAAGAGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCATGCTGAAACA TTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGGGACAGCA GCGTGAGCTACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTCAT                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK101640             [                                  CAT CGAAACCGCTCTTCTTCCCTGCTGCGGGGTGAGGGATGGAGCGCGTGAGGAGGGCTTCGCACGCCGGCTCTTGGTACACCAACAATGCCAGGAAACTGGATGAGGAAC TTGAT GGTTGGCTGAGGGC TGCTGGTCTCACCAAGTCCCCTGATGTGAGGGCAGTAATTGCGCCCCATGCTGGCTATTCATACTCAGGGCGGTGTGCGGCTTATGCTTTTGGCAACATTGATCCAACTAACATTTCTCGGGTCTTCCTGTTAGGCCCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGTAATTGA GGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAAAGTTTTTCAGGGACATAACGTAAAAGTTGTCCCTATCCTTGTTGGTGCCCTTAACTCCCAAAATGAAGCCATGTATGGGCAGTTGCTCTCTAAATATCTTGACGATCCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAG GCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCA GTACCTGCAAGAGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCATGCTGAAACA TTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGGGACAGCA GCGTGAGCTACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTCATATTTCTGGATACATTTACCCTAGCATCTACGAGCTGAATATTCTTTTTGGGGTTTGAGGCCTGCTTGATAGCGGTGGGGTTTTTTTTTTTTCGATATAGATTCTACAGCAGCAAGCTCAACAAGGCAACAACTATACCACTAGAAAAAAAAATACTAGCACAAACAACTAGTTACTCGCGGTAACAGTAAGCAAAAATCAGAAGAATATGGATAGCATGATTTCACTGAGATGCGAAGCTGATGTATTTCTCGAAATTCAAATCTTTAAGGGCATTATACCTCTTTGTTGAGTAGCTCATAAAGAGA]
[+] EMBL C26167               [                                               TCTTCTTCCCTGCTGCGGGGTGAGGGATGGAGCGCGTNAGGAGGGCTTCGCACGCCGGCTCTTGGTACACCAACAATGCCAGGAAACTGGATGAGGGACTTTAATGGGTTGG TTAGGGCTTGCTGGTCTCACCAAGTCCCCTGATGTGAGGGCAGTAATTGCGCCCCATGCTGGCTATTCATACTCAGGGCGGTGTGCGGCTTATGCTTTTGGCAACATTGATCCAACTAACATTTCTCGGGTCTTCCTGTTAGGCCCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACCCCAATTGGGGATTTGCCAGTAGACCATGAAGTAATTNAGGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATTAAGCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI795779             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGTGCTATACATAAATCGATAGAGCCCCTTGGACCCCAT GGCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAA CACGTACCTGCAAGAGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCATGCTGAAACACTTGTTCGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAAAGCATGAGGGACAGCACGCGTGAGCTACGCTTCTGC GCAGCCAAGGTGGATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCATGATCGGTTT CCATCC TTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTT CAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTCATATTTCTGGATACAaaaaaaaaa                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU166375             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCA GTACCTGCAAGAGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCATGCTGAAACA TTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGGGACAGCA GCGTGAGCTACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTCATATTTNTGGATAaaaaaa                                                                                                                                                                                                                                                                                                  ]


>consensus_12826#0 GGGTGAGGAAGAGATTCCTCTTCCTTGCTGCCGCCATCGAAACCGCTCTTCTTCCCTGCT GCGGGGTGAGGGATGGAGCGCGTGAGGAGGGCTTCGCACGCCGGCTCTTGGTACACCAAC AATGCCAGGAAACTGGATGAGGAACTTGATGGTTGGCTGAGGGCTGCTGGTCTCACCAAG TCCCCTGATGTGAGGGCAGTAATTGCGCCCCATGCTGGCTATTCATACTCAGGGCGGTGT GCGGCTTATGCTTTTGGCAACATTGATCCAACTAACATTTCTCGGGTCTTCCTGTTAGGC CCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACC CCAATTGGGGATTTGCCAGTAGACCATGAAGTAATTGAGGAACTCAACGCTACAGGAAAA TTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCC TATCTTTCTAAAGTTTTTCAGGGACATAACGTAAAAGTTGTCCCTATCCTTGTTGGTGCC CTTAACTCCCAAAATGAAGCCATGTATGGGCAGTTGCTCTCTAAATATCTTGACGATCCG AAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGGTTTAGTTACACA TACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAGGCCTTGGACCGCATGGGC ATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCAGTACCTGCAAGAGTATGAG AATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCATGCTGAAACATTGTTTG ACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGG GACAGCAGCGTGAGCTACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAG AAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCAT GATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTT GTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATAC TCATATTTCTGGATACATTTACCCTAGCATCTACGAGCTGAATATTCTTTTTGGGGTTTG AGGCCTGCTTGATAGCGGTGGGGTTTTTTTTTTTTCGATATAGATTCTACAGCAGCAAGC TCAACAAGGCAACAACTATACCACTAGAAAAAAAAATACTAGCACAAACAACTAGTTACT CGCGGTAACAGTAAGCAAAAATCAGAAGAATATGGATAGCATGATTTCACTGAGATGCGA AGCTGATGTATTTCTCGAAATTCAAATCTTTAAGGGCATTATACCTCTTTGTTGAGTAGC TCATAAAGAGA



consensusID : consensus_12826#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 614
fasta sequence
                              [GTTGTAGTTGTTACTTCAATCTTATAGGATCTGTATATGATTATGCTCATCCGCATCGTCTCCATCAGGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATCCATAAATCGATAGAGGCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCAGTACCTGCAAGAGTATGAGAATNCCATNTGTGGACGCCACCCCATCAGNGTTTTCCTCAGCATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTNTGAGCAGTCNAGCCAGTGCAAGAGCATGAGGGACAGCAGCGTGAG-TACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTC-ATATTTCTGGATAAAAAAAAAAAAAAAAAAAAAAAAAGTCATGCCGTTACGT]

[+] EMBL AU092917             [GTTGTAGTTGTTACTTCAATCTTATAGGATCTGTATATGATTATGCTCATCCGCATCGTCTCCATCAGGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATCCATAAATCGATAGAGGCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCAGTACCTGCAAGAGTATGAGAATNCCATNTGTGGACGCCACCCCATCAGNGTTTTCCTCAGCATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTNTGAGCAGTCNAGCCAGTGCAAGAGCATGAGGGACAGCAGCGTGAG TACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTC ATATTTCTGGATAAAAAAAAAAAAAAAAAAAAAAAAA               ]
[-] EMBL CF330997             [                                                                  cGGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAGGCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCAGTACCTGCAAGAGTATGAGAATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGGGACAGCAGCGTGAGCTACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTC ATATTTCTGGATAAAAAAAAAAAAAAAAAAAAACAAAGTCATGCCGTTACGT]
[+] EMBL AU182469             [                                                                                                                                                                                                                                                                                                                                                                     GTGNAAACTCCAGCCNAANAAAAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCNCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCNGCCTGCCAAACTCTATAAAGTAATANCAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATACTCTATATTTCTGGATAAAAA                                   ]


>consensus_12826#1 GTTGTAGTTGTTACTTCAATCTTATAGGATCTGTATATGATTATGCTCATCCGCATCGTC TCCATCAGGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATCCATAAATCGATA GAGGCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAG CAGTACCTGCAAGAGTATGAGAATNCCATNTGTGGACGCCACCCCATCAGNGTTTTCCTC AGCATGCTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTNTGAGCAGTCN AGCCAGTGCAAGAGCATGAGGGACAGCAGCGTGAGTACGCTTCTGCGGCAGCCAAGGTGG ATACTCCAGCCGAAGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAA CCCCCGCCTGCAGCTAGCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTA TAAAGTAATAACAGGTTCTTGTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAA CAACAATGAATAAGGAATACTCATATTTCTGGATAAAAAAAAAAAAAAAAAAAAAAAAAG TCATGCCGTTACGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12826#0      GGGTGAGGAAGAGATTCCTCTTCCTTGCTGCCGCCATCGAAACCGCTCTTCTTCCCTGCT 60
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      GCGGGGTGAGGGATGGAGCGCGTGAGGAGGGCTTCGCACGCCGGCTCTTGGTACACCAAC 120
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      AATGCCAGGAAACTGGATGAGGAACTTGATGGTTGGCTGAGGGCTGCTGGTCTCACCAAG 180
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      TCCCCTGATGTGAGGGCAGTAATTGCGCCCCATGCTGGCTATTCATACTCAGGGCGGTGT 240
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      GCGGCTTATGCTTTTGGCAACATTGATCCAACTAACATTTCTCGGGTCTTCCTGTTAGGC 300
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      CCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCACC 360
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      CCAATTGGGGATTTGCCAGTAGACCATGAAGTAATTGAGGAACTCAACGCTACAGGAAAA 420
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      TTTGATTTTATGGACCTTAGTGTGGATGAAGCTGAACATAGCATGGAAATGCATTTACCC 480
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      TATCTTTCTAAAGTTTTTCAGGGACATAACGTAAAAGTTGTCCCTATCCTTGTTGGTGCC 540
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      CTTAACTCCCAAAATGAAGCCATGTATGGGCAGTTGCTCTCTAAATATCTTGACGATCCG 600
consensus_12826#1      --------------------------GTTGTAGTTGTTACTTCAATCTTATAG-GATCTG 33
                                                    * ***** *   * *** *  *   **** *

consensus_12826#0      AAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGGTTTAGTTACACA 660
consensus_12826#1      TATATGATTATGCTCATCCGCATCGTCTCC------------ATCAGGTTTAGTTACACA 81
                        * *   *  *    ***  *   *  * *            * * **************

consensus_12826#0      TACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAGGCCTTGGACCGCATGGGC 720
consensus_12826#1      TACTACGATAAGAGCCATGGTGCTATCCATAAATCGATAGAGGCCTTGGACCGCATGGGC 141
                       ************************** *********************************

consensus_12826#0      ATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCAGTACCTGCAAGAGTATGAG 780
consensus_12826#1      ATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCAGTACCTGCAAGAGTATGAG 201
                       ************************************************************

consensus_12826#0      AATACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCATGCTGAAACATTGTTTG 840
consensus_12826#1      AATNCCATNTGTGGACGCCACCCCATCAGNGTTTTCCTCAGCATGCTGAAACATTGTTTG 261
                       *** **** ******************** ******************************

consensus_12826#0      ACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCAAGAGCATGAGG 900
consensus_12826#1      ACAAAGATCAAGATCGGATTTGTTCGGTNTGAGCAGTCNAGCCAGTGCAAGAGCATGAGG 321
                       **************************** ********* *********************

consensus_12826#0      GACAGCAGCGTGAGCTACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAG 960
consensus_12826#1      GACAGCAGCGTGAG-TACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGAAGAAGAG 380
                       ************** *********************************************

consensus_12826#0      AAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCAT 1020
consensus_12826#1      AAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAGCAT 440
                       ************************************************************

consensus_12826#0      GATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTT 1080
consensus_12826#1      GATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTT 500
                       ************************************************************

consensus_12826#0      GTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATAC 1140
consensus_12826#1      GTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGGTAACAACAATGAATAAGGAATAC 560
                       ************************************************************

consensus_12826#0      TCATATTTCTGGATACATTTACCCTAGCATCTACGAGCTGAATATTCTTTTTGGGGTTTG 1200
consensus_12826#1      TCATATTTCTGGATAAAA--AAAAAAAAAAAAAAAAAAAAAGTCATGCCGTTACGT---- 614
                       *************** *   *    *  *   *  *    * *  *    **  *     

consensus_12826#0      AGGCCTGCTTGATAGCGGTGGGGTTTTTTTTTTTTCGATATAGATTCTACAGCAGCAAGC 1260
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      TCAACAAGGCAACAACTATACCACTAGAAAAAAAAATACTAGCACAAACAACTAGTTACT 1320
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      CGCGGTAACAGTAAGCAAAAATCAGAAGAATATGGATAGCATGATTTCACTGAGATGCGA 1380
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      AGCTGATGTATTTCTCGAAATTCAAATCTTTAAGGGCATTATACCTCTTTGTTGAGTAGC 1440
consensus_12826#1      ------------------------------------------------------------
                                                                                   

consensus_12826#0      TCATAAAGAGA 1451
consensus_12826#1      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)