These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2293 fasta sequence [TTATCAGCAGCGAGACGCGGCGAAGCAAACCAAACTGAAGAGGAATTTATGCACTTCACCCCCTGGTAAAATTCTCCGAGAAACAAATCGCTCCCACCCCTCGCCGCCGCCGCCGCGTTGGGTGGGCGGGGGATCGATCCGGCGGTGCCCGCCCGCCATGGGGACGGCGACGATGGCGACGGCGGTGGGGGCGGCGGTGGTGCTGTATTTCGTGCTGAGCCGGCGGCTGGCCCAGGAGGATGGGGGTGGTGGGGGTGGGGGTGGGGGTGGAGGGGGGAAGCGGCGGAGGGTGCGCGCGGCGAGGCGGCCCGCGCAGCCGCCGGCGACGTGGATCGAGGCGGTGGGCACGCTGGCGGAGACGCTGCGGTTCACCTACTCGGAGACGCTCGGGAAATGGCCCATCGGGGACCTCGCGTTCGGGATCAAGTACCTCATGCGCCGCCAGGGAAATTTACATGTCGCTAGTGTATATGCTGGAAACAATTGCATTGAACTGAAAGGGCCTGAAATAATGGAAGAGCTTATTGTTCTGAGACGATTAATCGATCTTTGCTTTCTTTTTTCTAAGAAACCATTTCCGGTCTTCCTGGAATTAGCTGGATTTTCCCCAGAGGATGTTCTTATTGAGGAACCTAAAGCGGGGATTTTAAAGCCTGCCCATACAATCCTGCGTGATGAATGCACCAAATCCTTCCTTGTGTTGATTCGTGGGACACATAGTATGAAAGACACATTGACTGCAGCTACTGGTGCTGTAGTACCATTTCACCACTCACTTTTAGATGAAGGTGGTGTCAGCAAGTTAGTGCTGGGATATGCACACTGTGGGATGGTTGCAGCAGCCCGCTGGATTGCAAGAAGTATAACACCATGTCTCTGTCAAGCAGTCAGTCAATGCCCAGACTACCAAATCAGGGTTGTTGGCCATTCATTGGGTGGTGGTACTGCTGCATTACTGACCTACATCCTGAGAGAACACCAGGAGTTGTCTTCAACAACTTGTGTTGCCTTTGCTCCAGCTTCATGCATGACATGGGAGTTAGCAGAATCAGGCAAGCATTTTGTGAGGACTATTGTAAACGGTGCTGATCTGGTTCCTACAGTATCAACTTCATCTATAGATGATCTCCGTTCAGAGGTAACGGCATCTTCATGGTTAAATGATTTGAGGGATCAGATACAGCAGACACGCTTCCTAAATGTTGTTTACCGGTCTGCTACTGCTTTAGGAACTCGCCTGCAATCATTTTCTGGTGCCAGAGATAGGGTTGCAGGTGCTGGTGCACTGCTACGACCTGTTTCAAGCAAAACTCAGGTTGTGATGAAACAGGCACAGAATGTTGCGCAGGCTGTTGCTAGAAGTAGATCAGCATTTTCTTCATGGTCATGCATGGGTGCACGCCGTCGAGGTGTTGGTGTAGTTGCTGCAAGCGCTAAAGAGGAAATAACAGTGGAAACCCACGTCACATCTACCACTAATTCAGAGTCCTATGTTGTAGAACAACGTGGCACCAAGACCATGGAGGAGCTGCAGTACACTGCAGATAGTGTTTCAGTTCATGAGGAAACAGAAGAAGAGGCCCTTCTGAGTGAGCATGAATCCTCTAGGGAGCATGCAGAAGAAGAAATAACTGAAGGTGAGATGTGGTTTCAGTACGAGAAGGACCTGGATCGGCAGGCTGA-AGTGGAGGCTCAGACCAGGCAGGAAGAAGCAGCTGCTGCCAAGGAAATAATGGAGGAGGAAAGTGCTGTTC-T-AAAAAATGTTGAGGATAGGCAATCCTTTTCATCTGATAGTTTGGAGAGGCAGCAGTTCTACCCTCCTGGTAGAATCATGCACATGGTTGCCATGCCTCCTGCAGATTCTTGCCCTGATGATCCGGTTGCTGCTGATGAGTGCAGTGTGGGAATATACGAGACCCCAAGGGATCTTTACAGTAAAATCCGTCTATCCAACACCATGATCAATGACCATTACATGCCGATGTATAAGAAAAC-ATGGAAATATTGATTGAGAAGTTTGCGAAC-ATGATGAAAATTTCTGTACAGACTCGACAGTAGAATAATATGGATGACTTGTAACATCGAAGTGTATAGTAGTTCTTTCTGTTTAGCTTTAACCA-CCTGATATGCTCCTGATATGCAATATAGAAAAGAGATGCTGTCCTGAATTACAATATAGAAGAGATGCTGTCCTGAA-TTAGTTAAGAGAGTTGTGGATGATATGATATGTAAAATGTAAATGAAAAATAGAATTAATGGATG-TTTATTACCGGAAAAAAAAAAAAAAAAAAGA] [+] EMBL AK100627 [TTATCAGCAGCGAGACGCGGCGAAGCAAACCAAACTGAAGAGGAATTTATGCACTTCACCCCCTGGTAAAATTCTCCGAGAAACAAATCGCTCCCACCCCTCGCCGCCGCCGCCGCGTTGGGTGGGCGGGGGATCGATCCGGCGGTGCCCGCCCGCCATGGGGACGGCGACGATGGCGACGGCGGTGGGGGCGGCGGTGGTGCTGTATTTCGTGCTGAGCCGGCGGCTGGCCCAGGAGGATGGGGGTGGTGGGGGTGGGGGTGGGGGTGGAGGGGGGAAGCGGCGGAGGGTGCGCGCGGCGAGGCGGCCCGCGCAGCCGCCGGCGACGTGGATCGAGGCGGTGGGCACGCTGGCGGAGACGCTGCGGTTCACCTACTCGGAGACGCTCGGGAAATGGCCCATCGGGGACCTCGCGTTCGGGATCAAGTACCTCATGCGCCGCCAGGGAAATTTACATGTCGCTAGTGTATATGCTGGAAACAATTGCATTGAACTGAAAGGGCCTGAAATAATGGAAGAGCTTATTGTTCTGAGACGATTAATCGATCTTTGCTTTCTTTTTTCTAAGAAACCATTTCCGGTCTTCCTGGAATTAGCTGGATTTTCCCCAGAGGATGTTCTTATTGAGGAACCTAAAGCGGGGATTTTAAAGCCTGCCCATACAATCCTGCGTGATGAATGCACCAAATCCTTCCTTGTGTTGATTCGTGGGACACATAGTATGAAAGACACATTGACTGCAGCTACTGGTGCTGTAGTACCATTTCACCACTCACTTTTAGATGAAGGTGGTGTCAGCAAGTTAGTGCTGGGATATGCACACTGTGGGATGGTTGCAGCAGCCCGCTGGATTGCAAGAAGTATAACACCATGTCTCTGTCAAGCAGTCAGTCAATGCCCAGACTACCAAATCAGGGTTGTTGGCCATTCATTGGGTGGTGGTACTGCTGCATTACTGACCTACATCCTGAGAGAACACCAGGAGTTGTCTTCAACAACTTGTGTTGCCTTTGCTCCAGCTTCATGCATGACATGGGAGTTAGCAGAATCAGGCAAGCATTTTGTGAGGACTATTGTAAACGGTGCTGATCTGGTTCCTACAGTATCAACTTCATCTATAGATGATCTCCGTTCAGAGGTAACGGCATCTTCATGGTTAAATGATTTGAGGGATCAGATACAGCAGACACGCTTCCTAAATGTTGTTTACCGGTCTGCTACTGCTTTAGGAACTCGCCTGCAATCATTTTCTGGTGCCAGAGATAGGGTTGCAGGTGCTGGTGCACTGCTACGACCTGTTTCAAGCAAAACTCAGGTTGTGATGAAACAGGCACAGAATGTTGCGCAGGCTGTTGCTAGAAGTAGATCAGCATTTTCTTCATGGTCATGCATGGGTGCACGCCGTCGAGGTGTTGGTGTAGTTGCTGCAAGCGCTAAAGAGGAAATAACAGTGGAAACCCACGTCACATCTACCACTAATTCAGAGTCCTATGTTGTAGAACAACGTGGCACCAAGACCATGGAGGAGCTGCAGTACACTGCAGATAGTGTTTCAGTTCATGAGGAAACAGAAGAAGAGGCCCTTCTGAGTGAGCATGAATCCTCTAGGGAGCATGCAGAAGAAGAAATAACTGAAGGTGAGATGTGGTTTCAGTACGAGAAGGACCTGGATCGGCAGGCTGA AGTGGAGGCTCAGACCAGGCAGGAAGAAGCAGCTGCTGCCAAGGAAATAATGGAGGAGGAAAGTGCTGTTC T AAAAAATGTTGAGGATAGGCAATCCTTTTCATCTGATAGTTTGGAGAGGCAGCAGTTCTACCCTCCTGGTAGAATCATGCACATGGTTGCCATGCCTCCTGCAGATTCTTGCCCTGATGATCCGGTTGCTGCTGATGAGTGCAGTGTGGGAATATACGAGACCCCAAGGGATCTTTACAGTAAAATCCGTCTATCCAACACCATGATCAATGACCATTACATGCCGATGTATAAGAAAACAATGGAAATATTGATTGAGAAGTTTGCGAACAATGATGAAAATTTCTGTACAGACTCGACAGTAGAATAATATGGATGACTTGTAACATCGAAGTGTATAGTAGTTCTTTCTGTTTAGCTTTAACCA CCTGATATGCTCCTGATATGCAATATAGAAAAGAGATGCTGTCCTGAATTACAATATAGAAGAGATGCTGTCCTGAA TTAGTTAAGAGAGTTGTGGATGATATGATATGTAAAATGTAAATGAAAAATAGAATTAATGGATG ] [+] EMBL CB635548 [ CGCGGCGAGGCGGCCCGCGCAGCCGCCGGCGACGTGGATCGAGGCGGTGGGCACGCTGGCGGAGACGCTGCGGTTCACCTACTCGGAGACGCTCGGGAAATGGCCCATCGGGGACCTCGCGTTCGGGATCAAGTACCTCATGCGCCGCCAGGGAAATTTACATGTCGCTAGTGTATATGCTGGAAACAATTGCATTGAACTGAAAGGGCCTGAAATAATGGAAGAGCTTATTGTTCTGAGACGATTAATCGATCTTTGCTTTCTTTTTTCTAAGAAACCATTTCCGGTCTTCCTGGAATTAGCTGGATTTTCCCCAGAGGATGTTCTTATTGAGGAACCTAAAGCGGGGATTTTAAAGCCTGCCCATACAATCCTGCGTGATGAATGCACCAAATCCTTCCTTGTGTTGATTCGTGGGACACATAGTATGAAAGACACATTGACTGCAGCTACTGGTGCTGTAGTACCATTTCACCACTCACTTTTAGATGAAGGTGGTGTCAGCAAGTTAGTGCTGGGATATGCACACTGTGGGATGGTTGCAGCAGCCCGCTGGATTGCAAGAAGTATAACACCATGTCTCTGTCAAGCAGTCAGTCAATGCCCAGACTACCAAATCAGGGTTGTTGGCCATTCATTGGGTGGTGGTACTGCTGCATTACTGACCTACATCCTGAGAGAACACCAGGAGTTGTCTTCAACAACTTGTGTTGCCTTTGCTCCAGCTTCATGCATGACATGGGAGTTAGCAGAATCAGGCAAGCATTTTGTGAGGACTATTGTAAACGGTGCTGATCTGGTTC ] [-] EMBL CB635549 [ GTTTCAGTTCATGAGGAAACAGAAGAAGAGGCCCTTCTGAGTGAGCATGAATCCTCTAGGGAGCATGCAGAAGAAGAAATAACTGAAGGTGAGATGTGGTTTGAGTACGAGAAGGACCTGGATCGGCAGGCTGA AGTGGAGGCTCAGACCAGGCAGGAAGAAGCAGCTGCTGCCAAGGAAATAATGGAGGAGGAAAGTGCTGTTC T AAAAAATGTTGAGGATAGGCAATCCTTTTCATCTGATAGTTTGGAGAGGCAGCAGTTCTACCCTCCTGGTAGAATCATGCACATGGTTGCCATGCCTCCTGCAGATTCTTGCCCTGATGATCCGGTTGCTGCTGATGAGTGCAGTGTGGGAATATACGAGACCCCAAGGGATCTTTACAGTAAAATCCGTCTATCCAACCCCATGATCAATGACCATTACATGCCGATGTATAAGAAAACAATGGAAATATTGATTGAGAAGTTTGCGAACAATGATGAAAATTTTTGTACAGACTCGACAGTAGAATAATATGGATGACTTGTAACATCGAAGTGTATAGTAGTTCTTTCTGTTTAGCTTTAACCC CCTGATATGCTCCTGATATGCAATATAGAAAAGAGATGCTGTCCTGAATTACAATATAGAAGAGATGCTGTCCTGAA TTAGTTAAGAGAGTTGTGGATGATATGATATGTAAAATGTAAATGAAAAATAGGATTAATGGATG TTTATTACCGGAAAAAAAAAAAAAAAAAAGA] [+] EMBL BM420492 [ ctTGAGAGTGGAGGCTCAGACCA GCAGGAAGAA CAGCTGCTGCCAAGGAAATAATGGAGGAGGAAAGTGCTGTTCTT AAAAAATGTTGAGGATAGGCAATCCTTTTCATCTGATAGTTTGGAGAGGCAGCAGTTCTACCCTCCTGGTAGAATCATGCACATGGTTGCCATGCCTCCTGCAGATTCTTGCCCTGATGATCCGGTTGCTGCTGATGAGTGCAGTGTGGGAATATACGAGACCCCAAGGGATCTTTACAGTAAAATCCGTCTATCCAACACCATGATCAATGACCATTACATGCCGATGTATAAGAAAAC ATGGAAATATTGATTGAGAAGTTTGCGAAC ATGATGAAAATTTCTGTACAGACTCGACAGTAGAATAATATGGATGACTTGTAACATCGAAGTGTATAGTAGTTCTTTCTGTTTAGCTTTAACCA CCTGATATGCTCCTGATATGC ATATAGNNAAGAGATGCTGTCCTGAATTAAAAaa ] [+] EMBL BI803251 [ A AGTGGAGCCTC ACCAGCCA GAAGAACCA CTGCT CCAAGGAAATAATGGAGGAGGAAAGTGCTGTTC TAAAAAAATGTTGAGGATAGCCAATCCTTTTCATCTGATAGTTTGGAGA GCA CAGTTCTACCCTCCTGGTAGAATCATGCACATGGTT CCATGCCTCCT CAGATTCTTGCCCTGATGATCC GTTGCTGCTGATGAGT CAGTGTGGGAATATACGAGACCCCAAGGGATCTTTACAGTAAAATCCGTCTATCCAACACCATGATCAATGACCATTACATGCCGATGTATAAGAAAAC ATGGAAATATTGATTGAGAAGTTTGCGAAC ATGATGAAAATTTCTGTACAGACTCGACAGTAGAATAATATGGATGACTTGTAACATCGAAGTGTATAGTAGTTCTTTCTGTTTAGCTTTAACCA CCTGATATGCTCCTGATAT CCATATAGAAAAGAGATCCTGTCCTGAAT CCATATAGAAGAGATCCT TCCTGAATTTAGTTAAGAGATTTGTGGATGATATGATATGTAAAATGTAAATGAAAAATAGCATTAATGGATGTTTTATTACCGGAAAAAAAAAA ] [+] EMBL BI803485 [ TAGCCAATCCTTTTCATCTGATAGTTTGGAGAGGCA CAGTTCTACCCTCCTGGTAGAATCATGCACATGGTTGCCATGCCTCCTGCAGATTCTTGCCCTGATGATCCGGTTGCTGCTGATGAGTGCAGTGTGGGAATATACGAGACCCCAAGGGATCTTTACAGTAAAATCCGTCTATCCAACACCATGATCAATGACCATTACATGCCGATGTATAAGAAAAC ATGGAAATATTGATTGAGAAGTTTGCGAAC ATGATGAAAATTTCTGTACAGACTCGACAGTAGAATAATATGGATGACTTGTAACATCGAAGTGTATAGTAGTTCTTTCTGTTTAGCTTTAACCACCCTGATATGCTCCTGATATGCAATATAGAAAAGAGATGCTGTCCTGAATTACAATATAGAAGAGATGCTGTCCTGAA TTAGTTAAGAGAGTTGTGGATGATATGATATGTAAAATGTAAATGAAAAATAGAATTAATGGATG TTTATTAACGGAAAATAAAAAA ] consensusID : consensus_12859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [GTTCAGAGGTAACGGCATCTTCATGGTTAAATGATTTGAGGGATCAGATACAGCAGACACGCTTCCTAAATGTTGTTTACCGGTCTGCTACTGCTTTAGGAACTCGCCTGCAATCATTTTCTGGTGCCAGAGATAGGGTTGCAGGTGCTGGTGCACTGCTACGACCTGTTTCAAGCAAAACTCAGGTTGTGATGAAACAGGCACAGAATGTTGCGCAGGCTGTTGCTAGAAGTAGATCAGCATTTTCTTCATGGTCATGCATGGGTGCACGCCGTCGAGGTGTTGGTGTAGTAGCTGCAAGCGCTAAAGAGGAAATAACAGTGGAAACCCACGTCACATCTACCACTAATTCAGAGTCCTATGTAGTAGAACAACGTGGCACCAAGACCATGGAGGAGCTGCAGTACACTGCAGATAGTGTTTCAGTNCATGAGGAAACAGANGAAGATGCCCTNCTGAGTGAGCATGANNTCTCTAGGGAGCATGCAGANGAAGACATAACTGAAGGTGAGATGTGGGTNGAGTACGAGAAGGACCTGNNATCGCAGGCTGANNTGAGGCTAGACCCAGCAGGAAAANCCACTGCTGCAAGGAANATATGGNAGGAGAATGCTGTCTAAAATGTTGAGGATTNGCATCNTTCATCGAATATGAAAGCCCATCTCCTCCGGTAATTCCCT] [+] EMBL CA752999 [GTTCAGAGGTAACGGCATCTTCATGGTTAAATGATTTGAGGGATCAGATACAGCAGACACGCTTCCTAAATGTTGTTTACCGGTCTGCTACTGCTTTAGGAACTCGCCTGCAATCATTTTCTGGTGCCAGAGATAGGGTTGCAGGTGCTGGTGCACTGCTACGACCTGTTTCAAGCAAAACTCAGGTTGTGATGAAACAGGCACAGAATGTTGCGCAGGCTGTTGCTAGAAGTAGATCAGCATTTTCTTCATGGTCATGCATGGGTGCACGCCGTCGAGGTGTTGGTGTAGTAGCTGCAAGCGCTAAAGAGGAAATAACAGTGGAAACCCACGTCACATCTACCACTAATTCAGAGTCCTATGTAGTAGAACAACGTGGCACCAAGACCATGGAGGAGCTGCAGTACACTGCAGATAGTGTTTCAGTNCATGAGGAAACAGANGAAGATGCCCTNCTGAGTGAGCATGANNTCTCTAGGGAGCATGCAGANGAAGACATAACTGAAGGTGAGATGTGGGTNGAGTACGAGAAGGACCTGNNATCGCAGGCTGANNTGAGGCTAGACCCAGCAGGAAAANCCACTGCTGCAAGGAANATATGGNAGGAGAATGCTGTCTAAAATGTTGAGGATTNGCATCNTTCATCGAATATGAAAGCCCATCTCCTCCGGTAATTCCCT] consensusID : consensus_12859#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence [GGACCTGGATCGCCACGCTGAAGTGGAGCCTCAGACCCGCCAGGAAGACACCACGCTGCTCCCCAAGGAAATAATGGAGGAGGAAAGTGCTGTTCTAAAAAATTTTTGAGTATAGCAATCCTTTTCATCTGATATTTGGAGAGCCACAGTTCTACCCTCCTGGTAGAATCANGCACATGGTTCCATGCCTCCTCAGATTCTTGCCCTGATGATCCGGTTGCTGCTGATGAGTCACAGTGTGGGAATATACCGAGACCCCCAGGGATCCTTTACCACGTAAAATCCGTCTATCCAACCACCCATGATCCATGACCCTTACCATGCCCGATGTATAAGAAAACCCATGGAAATACTTGATTGAGAAGTTTGCCGAACCATGATGAAAATTTCTGTACAGACTCGACAG-TAGAATAATATGGATGACTTGTAACATCGAAGTGTATAGTAGTTCTTTCTGTTTAGCTTTAACCACCCTGATATGCTCCTGATAT-C-ATATAGAAAAGAGATGCT-GTCCTGAATTAAAAAATAGAAGAGATGCTGTCCTGAATTAGTTAAGAGAGTTGTGGATGATATGATATGTAAAATGTAAATGAAAAATAGAATTAATGGATGTTTATTAACGGAAAATATTCCTCAAAAA] [+] EMBL BM038031 [GGACCTGGATCGCCACGCTGAAGTGGAGCCTCAGACCCGCCAGGAAGACACCACGCTGCTCCCCAAGGAAATAATGGAGGAGGAAAGTGCTGTTCTAAAAAATTTTTGAGTATAGCAATCCTTTTCATCTGATATTTGGAGAGCCACAGTTCTACCCTCCTGGTAGAATCANGCACATGGTTCCATGCCTCCTCAGATTCTTGCCCTGATGATCCGGTTGCTGCTGATGAGTCACAGTGTGGGAATATACCGAGACCCCCAGGGATCCTTTACCACGTAAAATCCGTCTATCCAACCACCCATGATCCATGACCCTTACCATGCCCGATGTATAAGAAAACCCATGGAAATACTTGATTGAGAAGTTTGCCGAACCATGATGAAAATTTCTGTACAGACTCGACAG TAGAATAATATGGATGACTTGTAACATCGAAGTGTATAGTAGTTCTTTCTGTTTAGCTTTAACCACCCTGATATGCTCCTGATAT C ATATAGAAAAGAGATGCT GTCCTGAATTAAAAAA ] [+] EMBL BI800584 [ CTCGACAGTTAGAATAATATGGATGA TTGTAACATCGAAGTGTATAGTAGTTC TTCTGTTTAGCTTTAACCA CCTGATATGCTCCTGATATGCAATATAG AAAGAGATGCTGGTCCTGAATTACAATATAGAAGAGATGCTGTCCTGAATTAGTTAAGAGAGTTGTGGATGATATGATATGTAAAATGTAAATGAAAAATAGAATTAATGGATGTTTATTAACGGAAAATATTCCTCAAAAA] consensusID : consensus_12859#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [CCCGCGCAGCCGCCGGCGACGTGGATCGAGGCGGTGGGCACGCTGGCGGAGACGCTGCGGTTCACCTACTCGGAGACGCTCGGGAAATGGCCCATCGGGGACCTCGCGTTCGGGATCAAGTACCTCATGCGCCGCCAGGGAAATTTACATGTNNNTAGTGTATATGCTGGAAACAATTGCATTGAACTGAAAGGGCCTGAAATAATGGAAGAGCTTATTGTTCTGAGACGATTAATNNNTCTTTGCTTTCTTTTTTCNNNNNAACCATTNNNNNNCTTCCTGGAATTNCNNNGATNNNNCCNNNNGGATGTTCTTATNNNNNAACNNNNNNCGGGGATTTTAA] [+] EMBL CF196698 [CCCGCGCAGCCGCCGGCGACGTGGATCGAGGCGGTGGGCACGCTGGCGGAGACGCTGCGGTTCACCTACTCGGAGACGCTCGGGAAATGGCCCATCGGGGACCTCGCGTTCGGGATCAAGTACCTCATGCGCCGCCAGGGAAATTTACATGTNNNTAGTGTATATGCTGGAAACAATTGCATTGAACTGAAAGGGCCTGAAATAATGGAAGAGCTTATTGTTCTGAGACGATTAATNNNTCTTTGCTTTCTTTTTTCNNNNNAACCATTNNNNNNCTTCCTGGAATTNCNNNGATNNNNCCNNNNGGATGTTCTTATNNNNNAACNNNNNNCGGGGATTTTAA] consensusID : consensus_12859#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [AAATGGACCCATGTGACAATGGCCGGATGGTNATGAAAGGAAAACCTTATGGGAAATGATTGGATGTGGAGGAAGTGTTGGCGAACTCATGGATGGAAATTTGTGGCTGGTGACCAGACTGCGGACAACGTGAGAATGAATGATGGGATGGACTGTGGTGAACACTGCGGAAGTGGTGATGAGTGAGTGTGCTGTTGCCTGGTGTGTGAGCTTGTAACCACCTGATATGCTCCTGATATGGCAATATAGAAAAGAGATGGCTGTCCTGGAATTAAAAAA] [+] EMBL BM420400 [AAATGGACCCATGTGACAATGGCCGGATGGTNATGAAAGGAAAACCTTATGGGAAATGATTGGATGTGGAGGAAGTGTTGGCGAACTCATGGATGGAAATTTGTGGCTGGTGACCAGACTGCGGACAACGTGAGAATGAATGATGGGATGGACTGTGGTGAACACTGCGGAAGTGGTGATGAGTGAGTGTGCTGTTGCCTGGTGTGTGAGCTTGTAACCACCTGATATGCTCCTGATATGGCAATATAGAAAAGAGATGGCTGTCCTGGAATTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12859#0 ----------TTATCAGCAGCGAGACGCGGCGAAGCAAACCAAACTGAAGAGGAATTTAT 50 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 GTTCAGAGGTAACGGCATCTTCATGGTTAAATGATTTGAGGGATCAGATACAGCAGACAC 60 consensus_12859#2 ---------------------------------GGACCTGGATCGCCACGCTGAAGTGGA 27 consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 GCACTTCACCCCCTGGTAAAATTCT-CCGAGAAACAAATCGCTCCCACCCCTCGCCGCCG 109 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 GCTTCCTAAATGTTGTTTACCGGTC-TGCTACTGCTTTAGGAACTCGCCTGCAATCATTT 119 consensus_12859#2 GCCTCAGACCCGCCAGGAAGACACCACGCTGCTCCCCAAGGAAATAATGGAGGAGGAAAG 87 consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CCGCCGCGTTGGGTGGGCGGGGGATCGATCCGGCGGTGCCCGCCCGCCATGGGGACGGCG 169 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 TCTGGTGCCAGAGATAGGGTTGCAGGTGCTGGTGCACTGCTACGACCTGTTTCAAGCAAA 179 consensus_12859#2 TGCTGTTCTAAAAAATTTTTGAGTATAGCAATCCTTTTCATCTGATATTTGGAGAGCCAC 147 consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 ACGATGGCGACGGCGGTGGGGGCGGCGGTGGTGCTGTATTTCGTGCTGAGCCGGCGGCTG 229 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ACTCAGGTTGTGATGAAACAGGCACAGAATGTTGCGCAGGCTGTTGCTAGAAGTAGATCA 239 consensus_12859#2 AGTTCTACCCTCCTGGTAGAATCAN-GCACATGGTTCCATGCCTCCTCAGATTCTTGCCC 206 consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 GCCCAGGAGGATGGGGGTGGTGGGGGTGGGGGTGGGGGTGGAGGGGGGAAGCGGCGGAGG 289 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 GCATTTTCTTCATGGTCATGCATGGGTGCACGCCGTCGAGGTGTTGGTGTAGTAGCTGCA 299 consensus_12859#2 TGATGATCCGGTTGCTGCTG-ATGAGT-CACAGTGTGGGAATATACCGAGACCCCCAGGG 264 consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 GTGCGCGCGGCGAGGCGGCCCGCGCAGCC--GCCGGCGACGTGGATCGAGGCGGTGGGCA 347 consensus_12859#3 ------------------CCCGCGCAGCC--GCCGGCGACGTGGATCGAGGCGGTGGGCA 40 consensus_12859#1 AGCGCTAAAGAGGAAATAACAGTGGAAAC--CCACGTCACATCTACCACTAATTCAGAGT 357 consensus_12859#2 ATCCTTTACCACGTAAAATCCGTCTATCCAACCACCCATGATCCATGACCCTTACCATGC 324 consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CGCTGGCGGAGACGCTGCGGTTCACCTA---CTCGGAGACGCT--CGGGAAATGGCCCAT 402 consensus_12859#3 CGCTGGCGGAGACGCTGCGGTTCACCTA---CTCGGAGACGCT--CGGGAAATGGCCCAT 95 consensus_12859#1 CCTATGTAGTAGAACAACGTGGCACCAAGACCATGGAGGAGCTG-CAGTACACTGCAGAT 416 consensus_12859#2 CCGATGTATAAGAAAACCCATGGAAATACTTGATTGAGAAGTTTGCCGAACCATGATGAA 384 consensus_12859#4 ---------AAATGGACCCATGTGACAATGGCCGGATGGTNATGAAAGGAAAAC-CTTAT 50 * * * * * * * consensus_12859#0 CGGGGACCTCGCGTTCGGGATCAAGTACCTCATGCGCCGCCAGGGAAATTTACATGTCGC 462 consensus_12859#3 CGGGGACCTCGCGTTCGGGATCAAGTACCTCATGCGCCGCCAGGGAAATTTACATGTNNN 155 consensus_12859#1 AGTGTTTCAGTNCATGAGGAAACAGANGAAGATGCCCTNCTGAGTGAGCATG-ANNTCTC 475 consensus_12859#2 AATTTCTGTACAGACTCGACAGTAGAATAATATGGATGACTTGT--AACATCGAAGTGTA 442 consensus_12859#4 GGGAAATGATTGGATGTGGAGGAAGTGT-TGGCGAACTCATGGATGGAAATT--TGTGGC 107 * ** * * * consensus_12859#0 TAGTGTATATGCTGGAAACAATTGCATTGAAC-TGAAAGG-GCCTGAAAT---AATGGAA 517 consensus_12859#3 TAGTGTATATGCTGGAAACAATTGCATTGAAC-TGAAAGG-GCCTGAAAT---AATGGAA 210 consensus_12859#1 TAGGGAGCATGCAGANGAAGACATAACTGAAGGTGAGATGTGGGTNGAGT---ACGAGAA 532 consensus_12859#2 TAGTAGTTCTTTCTGTTTAGCTTTAACCACCC-TGATATGCTCCTGATATCATATAGAAA 501 consensus_12859#4 TGGTGACCAGACTGCGGACAACGTGAGAATGAATGATGGG---ATGGACT----GTGGTG 160 * * * *** * * * consensus_12859#0 GAGCTTATTGTTCTGAGACGATT----AATCGATCTTTGC-------TTTCTTTTTTCTA 566 consensus_12859#3 GAGCTTATTGTTCTGAGACGATT----AATNNNTCTTTGC-------TTTCTTTTTTCNN 259 consensus_12859#1 GGACCTGNNATCGCAGGCTGANNTG-AGGCTAGACCCAGCAGGAAAANCCACTGCTGCAA 591 consensus_12859#2 AGAGATGCTGTCCTGAATTAAAAAATAGAAGAGATGCTGTC------CTGAATTAGTTAA 555 consensus_12859#4 AACACTGCGGAAGTGG--TGATGAGTGAGTGTGCTGTTGCC------TGGTGTGTGAGCT 212 * * * * consensus_12859#0 AGAAACCATTTCCGGT-----CTTCCTGGAATTA---GCTGGATTTTCCCCAGAGGATGT 618 consensus_12859#3 NNNAACCATTNNNNNN-----CTTCCTGGAATTN---CNNNGATNNNNCCNNNNGGATGT 311 consensus_12859#1 GGAANATATGGNAGGAGAATGCTGTCTAAAATGT---TGAGGATTNGCATCNTTCATCGA 648 consensus_12859#2 GAGAGTTGTGGATGAT--ATGATATGTAAAATGTAAATGAAAAATAGAATTAATGGATGT 613 consensus_12859#4 TGTAACCACCTGATAT-----GCTCCTGATATGG---CAATATAGAAAAGAGATGGCTGT 264 * * ** * consensus_12859#0 TC-TTATTGAGGAACCTAAAGCGGGGATTTTAAAGCCTGCCCATACAATCCTGCGTGATG 677 consensus_12859#3 TC-TTATNNNNNAACNNNNNNCGGGGATTTTAA--------------------------- 343 consensus_12859#1 AT-ATGAAAGCCCATCTCCTCCGGTAATTCCCT--------------------------- 680 consensus_12859#2 TTATTAACGGAAAATATTCCTCAAAAA--------------------------------- 640 consensus_12859#4 CC--TGGAATTAAAAAA------------------------------------------- 279 * * consensus_12859#0 AATGCACCAAATCCTTCCTTGTGTTGATTCGTGGGACACATAGTATGAAAGACACATTGA 737 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CTGCAGCTACTGGTGCTGTAGTACCATTTCACCACTCACTTTTAGATGAAGGTGGTGTCA 797 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 GCAAGTTAGTGCTGGGATATGCACACTGTGGGATGGTTGCAGCAGCCCGCTGGATTGCAA 857 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 GAAGTATAACACCATGTCTCTGTCAAGCAGTCAGTCAATGCCCAGACTACCAAATCAGGG 917 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 TTGTTGGCCATTCATTGGGTGGTGGTACTGCTGCATTACTGACCTACATCCTGAGAGAAC 977 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 ACCAGGAGTTGTCTTCAACAACTTGTGTTGCCTTTGCTCCAGCTTCATGCATGACATGGG 1037 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 AGTTAGCAGAATCAGGCAAGCATTTTGTGAGGACTATTGTAAACGGTGCTGATCTGGTTC 1097 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CTACAGTATCAACTTCATCTATAGATGATCTCCGTTCAGAGGTAACGGCATCTTCATGGT 1157 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 TAAATGATTTGAGGGATCAGATACAGCAGACACGCTTCCTAAATGTTGTTTACCGGTCTG 1217 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CTACTGCTTTAGGAACTCGCCTGCAATCATTTTCTGGTGCCAGAGATAGGGTTGCAGGTG 1277 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CTGGTGCACTGCTACGACCTGTTTCAAGCAAAACTCAGGTTGTGATGAAACAGGCACAGA 1337 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 ATGTTGCGCAGGCTGTTGCTAGAAGTAGATCAGCATTTTCTTCATGGTCATGCATGGGTG 1397 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CACGCCGTCGAGGTGTTGGTGTAGTTGCTGCAAGCGCTAAAGAGGAAATAACAGTGGAAA 1457 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CCCACGTCACATCTACCACTAATTCAGAGTCCTATGTTGTAGAACAACGTGGCACCAAGA 1517 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CCATGGAGGAGCTGCAGTACACTGCAGATAGTGTTTCAGTTCATGAGGAAACAGAAGAAG 1577 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 AGGCCCTTCTGAGTGAGCATGAATCCTCTAGGGAGCATGCAGAAGAAGAAATAACTGAAG 1637 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 GTGAGATGTGGTTTCAGTACGAGAAGGACCTGGATCGGCAGGCTGAAGTGGAGGCTCAGA 1697 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CCAGGCAGGAAGAAGCAGCTGCTGCCAAGGAAATAATGGAGGAGGAAAGTGCTGTTCTAA 1757 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 AAAATGTTGAGGATAGGCAATCCTTTTCATCTGATAGTTTGGAGAGGCAGCAGTTCTACC 1817 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CTCCTGGTAGAATCATGCACATGGTTGCCATGCCTCCTGCAGATTCTTGCCCTGATGATC 1877 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CGGTTGCTGCTGATGAGTGCAGTGTGGGAATATACGAGACCCCAAGGGATCTTTACAGTA 1937 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 AAATCCGTCTATCCAACACCATGATCAATGACCATTACATGCCGATGTATAAGAAAACAT 1997 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 GGAAATATTGATTGAGAAGTTTGCGAACATGATGAAAATTTCTGTACAGACTCGACAGTA 2057 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 GAATAATATGGATGACTTGTAACATCGAAGTGTATAGTAGTTCTTTCTGTTTAGCTTTAA 2117 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 CCACCTGATATGCTCCTGATATGCAATATAGAAAAGAGATGCTGTCCTGAATTACAATAT 2177 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 AGAAGAGATGCTGTCCTGAATTAGTTAAGAGAGTTGTGGATGATATGATATGTAAAATGT 2237 consensus_12859#3 ------------------------------------------------------------ consensus_12859#1 ------------------------------------------------------------ consensus_12859#2 ------------------------------------------------------------ consensus_12859#4 ------------------------------------------------------------ consensus_12859#0 AAATGAAAAATAGAATTAATGGATGTTTATTACCGGAAAAAAAAAAAAAAAAAAGA 2293 consensus_12859#3 -------------------------------------------------------- consensus_12859#1 -------------------------------------------------------- consensus_12859#2 -------------------------------------------------------- consensus_12859#4 -------------------------------------------------------- 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||