These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2016 fasta sequence [TCTCTCCTCCTCTTTCGGCGCCCAAGCCGAACGAACGAGACGAGAGTACGAGACGCAACGCAAAGCCGACCAACGGCGACCACCTCAGCGCACCCGCAATCCCACGCCCGCCTGACACACACCGCGCGCAGCGCAGCGTGGGCAGCCGCGTAATTTCGCGCGGCCGCCACCGTATTCCGCCCCGTCCGGTCTCCGGACCCCGGTGGGTTGGGTTGCCGTGCCGTGCCGCGCCCTGTCTTTATCCCAAACCTCCTCCTCGCCAGCCAACGCTGCTTTCGCCGGTTACCCGGTCAAACTCATCCAACGGCGGCACGTCTCCGATCCGGTCACACCCACACACCCCACGAGATGCCTCGCCGGTCACGTGTGACGCGCGTGACGCCCCCTCCCTCTCTCGGCCGGCGCCCCACCCCCGCCGTGCTGTGTCCTTTTATTCCAACCCTCACCGCCCCACGATTCACGCCACCACCACTCCGTCCGTCGTCTCGTCTCGTCGCCTACCTAGGGTTTCGTGTTTGGGAGATCTGAGAGGGGGAGGGGGATGGAGGTGAGGGAGATGGCCGTGGCGGCGGCTGCGGCGGCGGCGGCGTCGTCCGGGGGAGGAGGTGGGGGGTTGAGGATGCCGCCGCCCAACCCTAACCTGCCGTACAGGGAGGATTGCTGGAGCGAGGGCGAGACGGAGGCGCTGGTCCGCGCGTGGGGGAGCCGCTACGTCGAGCTCAACCGGGGGAACCTGCGGCAGAAGCAGTGGCAGGAGGTGGCCGACGCCGTCAACTCGCGGCGCGGGGCGGCCGCGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGC-GC-GCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCTCTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCATTAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTGACCTCCTGTTTTATTTTTCTTTCTT-AAAAAAAAGTGTATCGACAAAAGGTGTTGCAATCTTTCCCTGTCGTTGTTGATCGCCTTGAATCGTGTAGGAGTAGCAACTTTCTGCGGAAGTTCTGGGAGCATTCTGCAACAGTAATCGTGTATAAGCCCCTGATGTTGCGTTGACACAACATCAAAACAGCTATTGGATATAATTTGGCA] [+] EMBL AK122091 [TCTCTCCTCCTCTTTCGGCGCCCAAGCCGAACGAACGAGACGAGAGTACGAGACGCAACGCAAAGCCGACCAACGGCGACCACCTCAGCGCACCCGCAATCCCACGCCCGCCTGACACACACCGCGCGCAGCGCAGCGTGGGCAGCCGCGTAATTTCGCGCGGCCGCCACCGTATTCCGCCCCGTCCGGTCTCCGGACCCCGGTGGGTTGGGTTGCCGTGCCGTGCCGCGCCCTGTCTTTATCCCAAACCTCCTCCTCGCCAGCCAACGCTGCTTTCGCCGGTTACCCGGTCAAACTCATCCAACGGCGGCACGTCTCCGATCCGGTCACACCCACACACCCCACGAGATGCCTCGCCGGTCACGTGTGACGCGCGTGACGCCCCCTCCCTCTCTCGGCCGGCGCCCCACCCCCGCCGTGCTGTGTCCTTTTATTCCAACCCTCACCGCCCCACGATTCACGCCACCACCACTCCGTCCGTCGTCTCGTCTCGTCGCCTACCTAGGGTTTCGTGTTTGGGAGATCTGAGAGGGGGAGGGGGATGGAGGTGAGGGAGATGGCCGTGGCGGCGGCTGCGGCGGCGGCGGCGTCGTCCGGGGGAGGAGGTGGGGGGTTGAGGATGCCGCCGCCCAACCCTAACCTGCCGTACAGGGAGGATTGCTGGAGCGAGGGCGAGACGGAGGCGCTGGTCCGCGCGTGGGGGAGCCGCTACGTCGAGCTCAACCGGGGGAACCTGCGGCAGAAGCAGTGGCAGGAGGTGGCCGACGCCGTCAACTCGCGGCGCGGGGCGGCCGCGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGC GC GCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTCGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCTCTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCATTAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGTTCGTAGCCTGGTAGTATATGGAAATTGAGGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTGACCTCCTGTTTTATTTTTCTTTCTTAAAAAAAAAGTGTATCGACAAAAGGTGTTGCAATCTTTCCCTGTCGTTGTTGATCGCCTTGAATCGTGTAGGAGTAGCAACTTTCTGCGGAAGTTCTGGGAGCATTCTGCAACAGTAATCGTGTATAAGCCCCTGATGTTGCGTTGACACAACATCAAAACAGCTATTGGATATAATTTGGCA] [+] EMBL AK067862 [ ATTCCAACCCTCACCGCCCCACGATTCACGCCACCACCACTCCGTCCGTCGTCTCGTCTCGTCGCCTACCTAGGGTTTCGTGTTTGGGAGATCTGAGAGGGGGAGGGGGATGGAGGTGAGGGAGATGGCCGTGGCGGCGGCTGCGGCGGCGGCGGCGTCGTCCGGGGGAGGAGGTGGGGGGTTGAGGATGCCGCCGCCCAACCCTAACCTGCCGTACAGGGAGGATTGCTGGAGCGAGGGCGAGACGGAGGCGCTGGTCCGCGCGTGGGGGAGCCGCTACGTCGAGCTCAACCGGGGGAACCTGCGGCAGAAGCAGTGGCAGGAGGTGGCCGACGCCGTCAACTCGCGGCGCGGGGCGGCCGCGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGC GC GCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCTCTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCATTAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTGACCTCCTGTTTTATTTTTCTTTCTT AAAAAAAAGTGTATCGACAA ] [+] EMBL CB659525 [ CGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGC GC GCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTC ] [+] EMBL AU176421 [ CGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGCAGCAGCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTA ] [-] EMBL CB659526 [ GCTTTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCTCTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCATTAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTGACCTCGTGTTTTATTTTTCTTTCTT AAAAAAAAGTGT ] consensusID : consensus_12900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1358 fasta sequence [ATCTATCCGGCTAACCCCACCTGCCCCCGTCCGTCCGCCCGCCCGCCCGCCTCGGCGACTTCACGCGTACAAGGGGGATTTGTTTTCTCTAGGGTTTCGTTCGCGAGGAGGAGAGATCTGGTTGGGGAGATGGACGGGAAGCCGCCGCCGCCGAACCCGAACCTGCCCTACCGGGAGGACTGCTGGAGCGACGGCGAGACGGCGGCGCTCGTCGACGCCTGGGGGAGGCGCTACGTCGACCTCAACCGCGGGAGCCTCCGCCAGCCGCAGTGGCGGGAGGTGGCCGAGGCCGTCAACGCGCGGCCGGGGGCGTCCGCGCGCCGCCGGCCGCCGCGCACCGACATCCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCGCGGGGGACGCCCTCGTCCTGGTACTTCTACAGGGACCTCGACATGCTCGTCGGCCCTACCCTCTCCGCCGCCGCCGCCGCCGGCGGTGGCGGTAGCGCCAAGAAGCCGTCCCCGCCCCGCGGGCTCCCCATGATGCGGAGGCGCCTGGAATCGCCCTCCCGCTCCCCCTCGCCGCCGTCACCGACGCCGGCCGTGGCCCTCCCCTTGCCAAACTACCGCCAGGCGTCGAACCTCCCGTCCGCGGGCCTCCTCTTCAATAAGATGGCTGCAGCGGCCGCGGCGGAATCTGATTCAGAGGACGGCTACAACAACCCGAACAACAACTATGAGGACGATGAAGACGACGGCTCGCAGCAGTCGGCGTCGCGGTCCGTGTCGTCTCGTTCCGGTGGCGTTGCAGCTGCAGGTGCAGGTGGTGGTGGCGTCAGCAGCAGCAAGAGGAAGAGGGGAGGCGGCGGCGGCGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATTTGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTGCAAAGGCAAAGCACGGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCA-CCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTAGGTAAAGATTTGTTTGGTCTCAGATTTATATTGTGGTGGACTGGTGGTCATATTAGGCCTGTAGTGGATTTTTCATGCGATTCCTATATGGGTACTGTTCCTTTATATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGCAATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAGTTTGAAATTCAACTGTCAATT] [+] EMBL AK099396 [ATCTATCCGGCTAACCCCACCTGCCCCCGTCCGTCCGCCCGCCCGCCCGCCTCGGCGACTTCACGCGTACAAGGGGGATTTGTTTTCTCTAGGGTTTCGTTCGCGAGGAGGAGAGATCTGGTTGGGGAGATGGACGGGAAGCCGCCGCCGCCGAACCCGAACCTGCCCTACCGGGAGGACTGCTGGAGCGACGGCGAGACGGCGGCGCTCGTCGACGCCTGGGGGAGGCGCTACGTCGACCTCAACCGCGGGAGCCTCCGCCAGCCGCAGTGGCGGGAGGTGGCCGAGGCCGTCAACGCGCGGCCGGGGGCGTCCGCGCGCCGCCGGCCGCCGCGCACCGACATCCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCGCGGGGGACGCCCTCGTCCTGGTACTTCTACAGGGACCTCGACATGCTCGTCGGCCCTACCCTCTCCGCCGCCGCCGCCGCCGGCGGTGGCGGTAGCGCCAAGAAGCCGTCCCCGCCCCGCGGGCTCCCCATGATGCGGAGGCGCCTGGAATCGCCCTCCCGCTCCCCCTCGCCGCCGTCACCGACGCCGGCCGTGGCCCTCCCCTTGCCAAACTACCGCCAGGCGTCGAACCTCCCGTCCGCGGGCCTCCTCTTCAATAAGATGGCTGCAGCGGCCGCGGCGGAATCTGATTCAGAGGACGGCTACAACAACCCGAACAACAACTATGAGGACGATGAAGACGACGGCTCGCAGCAGTCGGCGTCGCGGTCCGTGTCGTCTCGTTCCGGTGGCGTTGCAGCTGCAGGTGCAGGTGGTGGTGGCGTCAGCAGCAGCAAGAGGAAGAGGGGAGGCGGCGGCGGCGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATTTGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTGCAAAGGCAAAGCACGGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCA CCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTAGGTAAAGATTTGTTTGGTCTCAGATTTATATTGTGGTGGACTGGTGGTCATATTAGGCCTGTAGTGGATTTTTCATGCGATTCCTATATGGGTACTGTTCCTTTATATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGCAATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAGTTTGAAATTCAACTGTCAATT] [+] EMBL CB680809 [ ACCTGCCCTTGTCCGTCCGCCCGCCCGCCCGCCTCGGCGACTTCACGCGTACAAGGGGGATTTGTTTTCTCTAGGGTTTCGTTCGCGAGGAGGAGAGATCTGGTTGGGGAGATGGACGGGAAGCCGCCGCCGCCGAACCCGAACCTGCCCTACCGGGAGGACTGCTGGAGCGACGGCGAGACGGCGGCGCTCGTCGACGCCTGGGGGAGGCGCTACGTCGACCTCAACCGCGGGAGCCTCCGCCAGCCGCAGTGGCGGGAGGTGGCCGAGGCCGTCAACGCGCGGCCGGGGGCGTCCGCGCGCCGCCGGCCGCCGCGCACCGACATCCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCGCGGGGGACGCCCTCGTCCTGGTACTTCTACAGGGACCTCGACATGCTCGTCGGCCCTACCCTCTCCGCCGCCGCCGCCGCCGGCGGTGGCGGTAGCGCCAAGAAGCCGTCCCCGCCCCGCGGGCTCCCCATGATGCGGAGGCGCCTGGAATCGCCCTCCCGCTCCCCCTCGCCGCCGTCACCGACGCCGGCCGTGGCCCTCCCCTTGCCAAACTACCGCCAGGCGTCGAACCTCCCGTCCGCGGGCCTCCTCTTCAATAAGATGGCTGCAGCGGCCGCGGCG ] [+] EMBL BI797864 [ GCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTGCAAAGGCAAAGCACAGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTC CCGCGCTCCCATTCCTCAGCACCCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTAGGTAAAGATTTGTTTGGTCTCAGATTTATATTGTGGTGGACTGGTGGTCATATTA GCCTGTA TGGATTTTTCAT CGATTCCTATATGAGTACTGTTCCT ] consensusID : consensus_12900#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 549 fasta sequence [GTGGCGGTAGGCCAAGAAGCCGTCCCCGCCCCGCGGGTCCCCATGATGCGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATTTGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTTGCAAAGGCAAAGCACGGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCACCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTTAGGTAAAGATTTTGTTTTGTCTCAGATTTATATTNTTGGTGGACTTGTGGTCAATTTAGGCCTGTAGTGGATTTTTCATGCGATTCCTATATGGGTACTGTTCCTTTATATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGCAATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAAAAAAAAAAAANAAAAAAAAA] [+] EMBL OS1321946 [GTGGCGGTAGGCCAAGAAGCCGTCCCCGCCCCGCGGGTCCCCATGATGCGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATTTGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTTGCAAAGGCAAAGCACGGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCACCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTTAGGTAAAGATTTTGTTTTGTCTCAGATTTATATTNTTGGTGGACTTGTGGTCAAT ] [+] EMBL AU165618 [ TGCTTACCTATGATAATTTAAGAACAAGAG TTTAGGTAAAGA TTTGTTTGGTCTCAGATTTATATT GTGGTGGACTGGTGGTCATATTAGGCCTGTAGTGGATTTTTCATGCGATTCCTATATGGGTACTGTTCCTTTATATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGCAATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAAAAAAAAAAAANAAAAAAAAA] consensusID : consensus_12900#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence [GAGTAGAAAGTTGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF318707 [GAGTAGAAAGTTGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12900#0 TCTCTCCTCCTCTTTCGGCGCCCAAGCCGAACGAACGAGACGAGAGTACGAGACGCAACG 60 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ------------------------------------------------------------ consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CAAAGCCGACCAACGGCGACCACCTCAGCGCACCCGCAATCCCACGCCCGCCTGACACAC 120 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ------------------------------------------------------------ consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 ACCGCGCGCAGCGCAGCGTGGGCAGCCGCGTAATTTCGCGCGGCCGCCACCGTATTCCGC 180 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ------------------------------------------------------------ consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CCCGTCCGGTCTCCGGACCCCGGTGGGTTGGGTTGCCGTGCCGTGCCGCGCCCTGTCTTT 240 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ------------------------------------------------------------ consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 ATCCCAAACCTCCTCCTCGCCAGCCAACGCTGCTTTCGCCGGTTACCCGGTCAAACTCAT 300 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ------------------------------------------------------------ consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CCAACGGCGGCACGTCTCCGATCCGGTCACACCCACACACCCCACGAGATGCCTCGCCGG 360 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ------------------------------------------------------------ consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 TCACGTGTGACGCGCGTGACGCCCCCTCCCTCTCTCGGCCGGCGCCCCACCCCCGCCGTG 420 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ------------------------------------------------------------ consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CTGTGTCCTTTTATTCCAACCCTCACCGCCCCACGATTCACGCCACCACCACTCCGTCCG 480 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ----------------------------------------------------------AT 2 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 TCGTCTCGTCTCGTCGCCTACCTAGGGTTTCGTGTTTGGGAGATCTGAGAGGGGGAGGGG 540 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CTATCCGGCTAACCCCACCTGCCCCCGTCCGTCCGCCCGCCCGCCCGCCTCGGCGACTTC 62 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 GATGGAGGTGAGGGAGATGGCCGTGGCGGCGGCTGCGGCGGCGGCGGCGTCGTCCGGGGG 600 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ACGCGTACAAGGGGGATTTGTTTTCTCTAGGGTTTCGTTCGCGAGGAGGAGAGATCTGGT 122 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 AGGAGGTGGGGGGTTGAGGATGCCGCCGCCCAACCCTAACCTGCCGTACAGGGAGGATTG 660 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 TGGGGAGATGGACGGGAAGCCGCCGCCGCCGAACCCGAACCTGCCCTACCGGGAGGACTG 182 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CTGGAGCGAGGGCGAGACGGAGGCGCTGGTCCGCGCGTGGGGGAGCCGCTACGTCGAGCT 720 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CTGGAGCGACGGCGAGACGGCGGCGCTCGTCGACGCCTGGGGGAGGCGCTACGTCGACCT 242 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CAACCGGGGGAACCTGCGGCAGAAGCAGTGGCAGGAGGTGGCCGACGCCGTCAACTCGCG 780 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CAACCGCGGGAGCCTCCGCCAGCCGCAGTGGCGGGAGGTGGCCGAGGCCGTCAACGCGCG 302 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 GCGCGGGGCGGCCGCGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGT 840 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 GCCGGGGGCGTCCGCGCGCCGCCGGCCGCCGCGCACCGACATCCAGTGCAAGAACCGCGT 362 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCCCGCGTCATGCCATCCACCTGGTC 900 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCGCGGGGGACGCCCTCGTCCTGGTA 422 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAG 960 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CTTCTACAGGGACCTCGACATGCTCGTCGGCCCTACCCTCTCCGCCGCCGCCGCCGCCGG 482 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 GCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCC 1020 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CGGTGGCGGTAGCGCCAAGAAGCCGTCCCCGCCCCGCGGGCTCCCCATGATGCGGAGGCG 542 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 TTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGC 1080 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CCTGGAATCGCCCTCCCGCTCCCCCTCGCCGCCGTCACCGACGCCGGCCGTGGCCCTCCC 602 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 GTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCA 1140 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CTTGCCAAACTACCGCCAGGCGTCGAACCTCCCGTCCGCGGGCCTCCTCTTCAATAAGAT 662 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 GGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGG 1200 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 GGCTGCAGCGGCCGCGGCGGAATCTGATTCAGAGGACGGCTACAACAACCCGAACAACAA 722 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGG 1260 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CTATGAGGACGATGAAGACGACGGCTCGCAGCAGTCGGCGTCGCGGTCCGTGTCGTCTCG 782 consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 CAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGC 1320 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 TTCCGGTGGCGTTGCAGCTGCAGGTGCAGGTGGTGGTGGCGTCAGCAGCAGCAAGAGGAA 842 consensus_12900#2 -----------------------------GTGGCGGTAGGCCAAGAAGCCGTCCCCGCCC 31 consensus_12900#0 GATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACT 1380 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 GAGGGGAGGCGGCGGCGG---CGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATT 899 consensus_12900#2 CGCGGGTCCCCATGATG----CGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATT 87 consensus_12900#0 GGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAA 1440 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 TGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAG 959 consensus_12900#2 TGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAG 147 consensus_12900#0 CTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGAC 1500 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 GCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGT 1019 consensus_12900#2 GCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGT 207 consensus_12900#0 TGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCT 1560 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 GCAGCTTCAGCTT-GCAAAGGCAAAGCACGGGAAGCATCC-TGATGGTGCCACGGAGATG 1077 consensus_12900#2 GCAGCTTCAGCTTTGCAAAGGCAAAGCACGGGAAGCATCC-TGATGGTGCCACGGAGATG 266 consensus_12900#0 CTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCAT 1620 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 CTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCACCCCTGCTTACCTATGATAATTTAAG 1137 consensus_12900#2 CTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCACCCCTGCTTACCTATGATAATTTAAG 326 consensus_12900#0 TAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGT 1680 consensus_12900#3 ----------------------------------------------GAGTAGAAAGTTGT 14 consensus_12900#1 AACAAGAGTTT-------------AGGTAAAGATTT-GTTTGGTCTCAGATTTATATTGT 1183 consensus_12900#2 AACAAGAGTTTT------------AGGTAAAGATTTTGTTTTGTCTCAGATTTATATTNT 374 * * consensus_12900#0 TCGTAGCCTGGTAGT-ATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTT 1739 consensus_12900#3 TCGTAGCCTGGTAGT-ATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTT 73 consensus_12900#1 -GGTGGACTGGTGGTCATATTAGGCCTGTAG--TGGATTTTTCATGCG-ATTCCTATATG 1239 consensus_12900#2 TGGTGGACTTGTGGTCAATTTAGGCCTGTAG--TGGATTTTTCATGCG-ATTCCTATATG 431 ** * ** ** ** * * ** ** * ** ** * * * * * ** * consensus_12900#0 GACATTGGTGCCTGTGGGTTGTTAATCTGTTT-ACCTATTGTTTTATTGACATTTTAGGC 1798 consensus_12900#3 GACATTGGTGCCTGTGGGTTGTTAATCTGTTT-ACCTATTGTTTTATTGACATTTTAGGC 132 consensus_12900#1 GGTACTGTT-CCTTTA---TATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGC 1295 consensus_12900#2 GGTACTGTT-CCTTTA---TATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGC 487 * * ** * *** * * **** **** * * **** * * ** *** consensus_12900#0 A-TGTAACTCTGACCTCCTGTTTTATTTTTCTTTCTTAAAAAAAAGTGTATCGACAAAAG 1857 consensus_12900#3 A-TGTAACTCTAAA-----------------------AAAAAAAAAAAAAAAAAAAAAAA 168 consensus_12900#1 AATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAGTTTGAAATTCAACTGTCA 1355 consensus_12900#2 AATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAAAAAAAAAAAANAAAAAAA 547 * ** * * ** * consensus_12900#0 GTGTTGCAATCTTTCCCTGTCGTTGTTGATCGCCTTGAATCGTGTAGGAGTAGCAACTTT 1917 consensus_12900#3 A----------------------------------------------------------- 169 consensus_12900#1 ATT--------------------------------------------------------- 1358 consensus_12900#2 AA---------------------------------------------------------- 549 consensus_12900#0 CTGCGGAAGTTCTGGGAGCATTCTGCAACAGTAATCGTGTATAAGCCCCTGATGTTGCGT 1977 consensus_12900#3 ------------------------------------------------------------ consensus_12900#1 ------------------------------------------------------------ consensus_12900#2 ------------------------------------------------------------ consensus_12900#0 TGACACAACATCAAAACAGCTATTGGATATAATTTGGCA 2016 consensus_12900#3 --------------------------------------- consensus_12900#1 --------------------------------------- consensus_12900#2 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||