Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12911 cluster # 12911       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12911#0 length = 1529 sequences # 6  
consensus_12911#1 length = 783 sequences # 3  
consensus_12911#2 length = 646 sequences # 2  

consensusID : consensus_12911#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1529
fasta sequence
                              [TCTTTTTTTTAAAAATATAATAGTTCTATATTTTATGACGATCCTTTATTGTCATCGTGCTATCTTCACAGAGCCCATGCAAAGTATACTATGATGATGATTATGACAAATACACAGTTTGGTCATAAACAGTTATCATCCTATGAACAGTCGTCATAAACAGCCTCTCTGTTTATGACATATATGTGTTCTGTCATTAGGTAATCGTCACAGAAGCCCAGATTTGTTGTAGTGTAGGATAATAGGTGAACAACATGGATCTAGAACATGCACGATATATGTATAAGATATGCTCCCCCAAATATATGCATATAATGGAATATATAATGGAGACAAATATATGCATAATTAGAGAAAAACCAATGGGGTTTGTTCCCTACACATGGAGAACGCATGTAGCAATAATAAAGACACATAAATACAAACCTTCATTATGTTGATGTTCTCAATGTAAAGAAGACTAAATAAGATAAAGTTCAAGTAAACATTGGTCTCACTCATATATACTCCCTCCTTCCAAAAGTCTCAGTCGTATTACGTTTTGCTCCAAGACCAAGGAACTCTCCGACGCATTTAACCATCGCTACATCTGCATGGATTTAGAGGAAGCGACGCTTCGGTTGATGCACGATACGCGTGTGTGCAACACCGCAACCGTCCGCGCCCACCGCTCGCGAATAGGCAACGGATGGATTTGCATGCATGCAAAAGAATACTGTTCGGTTGCTGAGAGGAATTAAATCCATGCATGTTTAACGAAGAGACCAGCTACACATTTAAAGCCTGCATGCATGCATGCAGAGTGGAATGCGCCCATCTCATCTGGAAAAACAAGAAAACCAAATACGACTGAGACTTTTGGAAGGAGGGAGTATTGACTAGGTGATTCCCCGTGCTTTGCTGTGGGATTTACGAAGGAATTCTCAAAAAAAATGGCAATCAAGTTAGAAGTAAAAAGAAAAAAAATAATAAAACATCAGGTTTATCAGTCAAATCATACCCATGCTTTGGTCAAGCATTGACTAAAAACACACGATATTATGGATTACAAAGATTGTATGGATAATCAATATCAAAGGTATGGCATATAACAAAGTAGGACATTCACATA-TAAATAGCATGCAAACTTTATTTAAATCAAAATAAGTTCACAATAGGTCCAATATGCTCAAAGATTAGT-GAT-GACTTGCCTTGCTCAC-TGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGC-GGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGAC-GCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGC-TAC-GCCGGCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAGGTGTTCGATGAAATGTATTCGAGGAAAAGGCAGATAGGGATTTTCTACTC]

[+] EMBL CB654646             [TCTTTTTTTTAAAAATATAATAGTTCTATATTTTATGACGATCCTTTATTGTCATCGTGCTATCTTCACAGAGCCCATGCAAAGTATACTATGATGATGATTATGACAAATACACAGTTTGGTCATAAACAGTTATCATCCTATGAACAGTCGTCATAAACAGCCTCTCTGTTTATGACATATATGTGTTCTGTCATTAGGTAATCGTCACAGAAGCCCAGATTTGTTGTAGTGTAGGATAATAGGTGAACAACATGGATCTAGAACATGCACGATATATGTATAAGATATGCTCCCCCAAATATATGCATATAATGGAATATATAATGGAGACAAATATATGCATAATTAGAGAAAAACCAATGGGGTTTGTTCCCTACACATGGAGAACGCATGTAGCAATAATAAAGACACATAAATACAAACCTTCATTATGTTGATGTTCTCAATGTAAAGAAGACTAAATAAGATAAAGTTCAAGTAAACATTGGTCTCACTCATATATACTCCCTCCTTCCAAAAGTCTCAGTCGTATTACGTTTTGCTCCAAGACCAAGGAACTCTCCGACGCATTTAACCATCGCTACATCTGCATGGATTTAGAGGAAGCGACGCTTCGGTTGATGCACGATACGCGTGTGTGCAACACCGCAACCGTCCGCGCCCACCGCTCGCGAATAGGCAACGGATGGATTTGCATGCATGCAAAAGAATACTGTTCGGTTGCTGAGAGGAATTAAATCCATGCATGTTTAACGAAGAGACCAGCTACACATTTAAAGCCTGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF300709             [                                                                                                                                                                                                                                                                                                                                                 TATATGCATAATTAGAGAAAAACCAATGGGGTTTGTTCCCTACACATGGAGAACGCATGTAGCAATAATAAAGACACATAAATACAAACCTTCATTATGTGGATGTTCTCAATGTTAAGAAGACTAAATAAGATAAAGTTCAAGTAAACATTGGTCTCACTCATATATACTCCCTCCTTCCAAAAGTCTCAGTCGTATTACGTTTTGCTCCAAGACCAAGGAACTCTCCGACGCATTTAACCATCGCTACATCTGCATGGATTTAGAGGAAGCGACGCTTCGGTTGATGCACGATACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB654645             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAAGAATACTGTTCGGTTGCTGAGAGGAATTAAATCCATGCATGTTTAACGAAGAGACCAGCTACACATTTAAAGCCTGCATGCATGCATGCAGAGTGGAATGCGCCCATCTCATCTGGAAAAACAAGAAAACCAAATACGACTGAGACTTTTGGAAGGAGGGAGTATTGACTAGGTGATTCCCCGTGCTTTGCTGTGGGATTTACGAAGGAATTCTCAAAAAAAATGGCAATCAAGTTAGAAGTAAAAAGAAAAAAAATAATAAAACATCAGGTTTATCAGTCAAATCATACCCATGCTTTGGTCAAGCATTGACTAAAAACACACGATATTATGGATTACAAAGATTGTATGGATAATCAATATCAAAGGTATGGCATATAACAAAGTAGGACATTCACATA TAAATAGCATGCAAACTTTATTTAAATCAAAATAAGTTCGCAATAGGTCCAATATGCTCAAAGATTAGT GAT GACTTGCCTTGCTCAC TGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGC GGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGAC GCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGC TAC GCCGGCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCAC                                                     ]
[+] EMBL CF301365             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ttttttTTGACTAAAAACACACGATATTATGGATTACAAAGATTGTATGGATAATCAATATCAAAGGTATGGCATATAACAAAGTAGGACATTCACATA TAAATAGCATGCAAACTTTATTTAAATCAAAATAAGTTCACAATAGGTCCAATATGCTCAAAGATTAGT GAT GACTTGCCTTGCTCAC TGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGC GGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGAC GCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTT                                                                                                                                                           ]
[-] EMBL CF301364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGATTGTATGGATAATCAATATCAAAGGTATGGCATATAACAAAGTAGGACATTCACATANTAAATAGCATGCAAACTTTATTTAAATCAAAATAAGTTCACAATAGGTCCAATATGCTCAAAGATTAGT GAT GACTTGCCTTGCTCAC TGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGC GGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGAC GCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGC TAC GCCGGCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAGGTGTTCGATGAAATGTATTCGAGGAAAAGGCAGATAGGGATTTTCTACTC]
[-] EMBL BI796948             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCCAATATGCTCAAAGATTAGTAGATAGACTTGCCTTGCTCACATGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGGTGGAGCAACGG ATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGACAGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGG AGCAGAAGAAGTAGAGGCGG CCGAGCCACAG TCCCGCGGGCAGCGTACAGCCGGCTTCGGCTCCAACCAGTGATGATGAAGCc                                                            ]


>consensus_12911#0 TCTTTTTTTTAAAAATATAATAGTTCTATATTTTATGACGATCCTTTATTGTCATCGTGC TATCTTCACAGAGCCCATGCAAAGTATACTATGATGATGATTATGACAAATACACAGTTT GGTCATAAACAGTTATCATCCTATGAACAGTCGTCATAAACAGCCTCTCTGTTTATGACA TATATGTGTTCTGTCATTAGGTAATCGTCACAGAAGCCCAGATTTGTTGTAGTGTAGGAT AATAGGTGAACAACATGGATCTAGAACATGCACGATATATGTATAAGATATGCTCCCCCA AATATATGCATATAATGGAATATATAATGGAGACAAATATATGCATAATTAGAGAAAAAC CAATGGGGTTTGTTCCCTACACATGGAGAACGCATGTAGCAATAATAAAGACACATAAAT ACAAACCTTCATTATGTTGATGTTCTCAATGTAAAGAAGACTAAATAAGATAAAGTTCAA GTAAACATTGGTCTCACTCATATATACTCCCTCCTTCCAAAAGTCTCAGTCGTATTACGT TTTGCTCCAAGACCAAGGAACTCTCCGACGCATTTAACCATCGCTACATCTGCATGGATT TAGAGGAAGCGACGCTTCGGTTGATGCACGATACGCGTGTGTGCAACACCGCAACCGTCC GCGCCCACCGCTCGCGAATAGGCAACGGATGGATTTGCATGCATGCAAAAGAATACTGTT CGGTTGCTGAGAGGAATTAAATCCATGCATGTTTAACGAAGAGACCAGCTACACATTTAA AGCCTGCATGCATGCATGCAGAGTGGAATGCGCCCATCTCATCTGGAAAAACAAGAAAAC CAAATACGACTGAGACTTTTGGAAGGAGGGAGTATTGACTAGGTGATTCCCCGTGCTTTG CTGTGGGATTTACGAAGGAATTCTCAAAAAAAATGGCAATCAAGTTAGAAGTAAAAAGAA AAAAAATAATAAAACATCAGGTTTATCAGTCAAATCATACCCATGCTTTGGTCAAGCATT GACTAAAAACACACGATATTATGGATTACAAAGATTGTATGGATAATCAATATCAAAGGT ATGGCATATAACAAAGTAGGACATTCACATATAAATAGCATGCAAACTTTATTTAAATCA AAATAAGTTCACAATAGGTCCAATATGCTCAAAGATTAGTGATGACTTGCCTTGCTCACT GTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAGC AACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCG GCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATG CAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCGG CTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAGGTGTTCGATGAAATGTATTCG AGGAAAAGGCAGATAGGGATTTTCTACTC



consensusID : consensus_12911#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 783
fasta sequence
                              [TTTTTTTTTTTTTTGCATAATTAGAGAAAAACCAATGGGGTTTGTTCCCTACACATGGAGAACGCATGTAGCAATAATAAAGACACATAAATACAAACCTTCATTATGTTGATGTTCTCAATGTAAAGAAGACTAAATAAGATAAAGTTCAAGTAAACATTGGTCTCACTCATATATACTCCCTCCTTCCAAAAGTCTCAGTCGTATTACGTTTTGCTCCAAGACCAAGGAACTCTCCGACGCATTTAACCATCGCTACATCTGCATGGATTTAGAGGAAGCGACGCTTCGGTTGATGCACGATACGCGTGTGTGCAACACCGCAA-CCGTCCGCGCCCACCGCTCGCGAATAGGCAACGGATGGATTTGCATGCATGCAAAAGAATACTGTTCGGTTGCTGAGAGGAATTAAATCCATGCATGTTTAACGAAGAGACCAGCTACACATTTAAAGCCTGCATGCATGCATGCAGAGTGGAATGCGCCCATCTCATCTTGCTCACTGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCGGCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAG]

[-] EMBL AU081380             [TTTTTTTTTTTTTTGCATAATTAGAGAAAAACCAATGGGGTTTGTTCCCTACACATGGAGAACGCATGTAGCAATAATAAAGACACATAAATACAAACCTTCATTATGTTGATGTTCTCAATGTAAAGAAGACTAAATAAGATAAAGTTCAAGTAAACATTGGTCTCACTCATATATACTCCCTCCTTCCAAAAGTCTCAGTCGTATTACGTTTTGCTCCAAGACCAAGGAACTCTCCGACGCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AK064599             [                                                                               AAGACACATAAATACAAACCTTCATTATGTTGATGTTCTCAATGTAAAGAAGACTAAATAAGATAAAGTTCAAGTAAACATTGGTCTCACTCATATATACTCCCTCCTTCCAAAAGTCTCAGTCGTATTACGTTTTGCTCCAAGACCAAGGAACTCTCCGACGCATTTAACCATCGCTACATCTGCATGGATTTAGAGGAAGCGACGCTTCGGTTGATGCACGATACGCGTGTGTGCAACACCGCAA CCGTCCGCGCCCACCGCTCGCGAATAGGCAACGGATGGATTTGCATGCATGCAAAAGAATACTGTTCGGTTGCTGAGAGGAATTAAATCCATGCATGTTTAACGAAGAGACCAGCTACACATTTAAAGCCTGCATGCATGCATGCAGAGTGGAATGCGCCCATCTCATCTTGCTCACTGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCGGCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAG]
[-] EMBL CF300708             [                                                                                                                                                                                                                                                                           GGATTTAGAGGAAGCGACGCTTCGGTTGATGCACGATACGCGTGTGTGCAACACCGCAACCCGTCCGCGCCCACCGCTCGCGAATAGGCAACGGATGGATTTGCATGCATGCAAAAGAATACTGTTCGGTTGCTGAGAGGAATTAAGTCCATGCATGTTTAACGAAGAGACCAGCTACACATTTAAAGCCTGCATGCATGCATGCAGAGTGGAATGCGCCCATCTCATCTTGCTCACTGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCGGCTTCGGCTCCAACCAGTGATGATGAAGC           ]


>consensus_12911#1 TTTTTTTTTTTTTTGCATAATTAGAGAAAAACCAATGGGGTTTGTTCCCTACACATGGAG AACGCATGTAGCAATAATAAAGACACATAAATACAAACCTTCATTATGTTGATGTTCTCA ATGTAAAGAAGACTAAATAAGATAAAGTTCAAGTAAACATTGGTCTCACTCATATATACT CCCTCCTTCCAAAAGTCTCAGTCGTATTACGTTTTGCTCCAAGACCAAGGAACTCTCCGA CGCATTTAACCATCGCTACATCTGCATGGATTTAGAGGAAGCGACGCTTCGGTTGATGCA CGATACGCGTGTGTGCAACACCGCAACCGTCCGCGCCCACCGCTCGCGAATAGGCAACGG ATGGATTTGCATGCATGCAAAAGAATACTGTTCGGTTGCTGAGAGGAATTAAATCCATGC ATGTTTAACGAAGAGACCAGCTACACATTTAAAGCCTGCATGCATGCATGCAGAGTGGAA TGCGCCCATCTCATCTTGCTCACTGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCAC TCCCTCGGAATCGTGCGGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGG TGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGAC GTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCAC AGCTCCCGCGGTCAGCTACGCCGGCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCAC AAG



consensusID : consensus_12911#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 646
fasta sequence
                              [CATTTGAATAATTATATTATAATCACATTCCAGCCATAATTAATTTCCCAGCTCATACAAAAGCAAGTTCCAGCATTCAGTTTGCAACATGTTCCATACAAAAGCACAAAACATGATTACAAAATGATCCATCCACCATCCAACTACACAAGTCCCAGCCGACTACAAAGTTCCTATAGGTAGTGCCAAGTTCTTGCACCAAAAAATTCCACCTAGCAGCCACTACATTAACACGAGCCATCAAATTCCAAGCTCAGACACCTCATTCCTTGTCCAAATGCTATTATTTGTCGAAGGAGGTCCTGATGGTGAAGTGAGGGATTCCCGGGCATGCATATCCTCCTTGCTCACTGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCGGCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAGGTGTTCGATGAAATG]

[-] EMBL AK120671             [CATTTGAATAATTATATTATAATCACATTCCAGCCATAATTAATTTCCCAGCTCATACAAAAGCAAGTTCCAGCATTCAGTTTGCAACATGTTCCATACAAAAGCACAAAACATGATTACAAAATGATCCATCCACCATCCAACTACACAAGTCCCAGCCGACTACAAAGTTCCTATAGGTAGTGCCAAGTTCTTGCACCAAAAAATTCCACCTAGCAGCCACTACATTAACACGAGCCATCAAATTCCAAGCTCAGACACCTCATTCCTTGTCCAAATGCTATTATTTGTCGAAGGAGGTCCTGATGGTGAAGTGAGGGATTCCCGGGCATGCATATCCTCCTTGCTCACTGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCGGCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAGGTGTTCGATGAAATG]
[-] EMBL CA998817             [                                                                                                                                                                                                                                                                                                                                   CCCGGGCATGCATATCCTCCTTGCTCACTGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAGCAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCGGCTTCGGCTCCAA                                          ]


>consensus_12911#2 CATTTGAATAATTATATTATAATCACATTCCAGCCATAATTAATTTCCCAGCTCATACAA AAGCAAGTTCCAGCATTCAGTTTGCAACATGTTCCATACAAAAGCACAAAACATGATTAC AAAATGATCCATCCACCATCCAACTACACAAGTCCCAGCCGACTACAAAGTTCCTATAGG TAGTGCCAAGTTCTTGCACCAAAAAATTCCACCTAGCAGCCACTACATTAACACGAGCCA TCAAATTCCAAGCTCAGACACCTCATTCCTTGTCCAAATGCTATTATTTGTCGAAGGAGG TCCTGATGGTGAAGTGAGGGATTCCCGGGCATGCATATCCTCCTTGCTCACTGTCTTGCT GTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAGCAACGGCAT AGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTCGGCAGCGCA CGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGATGCAAGGCAG CAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCGGCTTCGGCT CCAACCAGTGATGATGAAGCATGCTCACAAGGTGTTCGATGAAATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12911#0      TCTTTTTTTTAAAAATATAATAGTTCTATATTTTATGACGATCCTTTATTGTCATCGTGC 60
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      TATCTTCACAGAGCCCATGCAAAGTATACTATGATGATGATTATGACAAATACACAGTTT 120
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      GGTCATAAACAGTTATCATCCTATGAACAGTCGTCATAAACAGCCTCTCTGTTTATGACA 180
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      TATATGTGTTCTGTCATTAGGTAATCGTCACAGAAGCCCAGATTTGTTGTAGTGTAGGAT 240
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      AATAGGTGAACAACATGGATCTAGAACATGCACGATATATGTATAAGATATGCTCCCCCA 300
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      AATATATGCATATAATGGAATATATAATGGAGACAAATATATGCATAATTAGAGAAAAAC 360
consensus_12911#1      ----------------------------TTTTTTTTTTTTTTGCATAATTAGAGAAAAAC 32
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      CAATGGGGTTTGTTCCCTACACATGGAGAACGCATGTAGCAATAATAAAGACACATAAAT 420
consensus_12911#1      CAATGGGGTTTGTTCCCTACACATGGAGAACGCATGTAGCAATAATAAAGACACATAAAT 92
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      ACAAACCTTCATTATGTTGATGTTCTCAATGTAAAGAAGACTAAATAAGATAAAGTTCAA 480
consensus_12911#1      ACAAACCTTCATTATGTTGATGTTCTCAATGTAAAGAAGACTAAATAAGATAAAGTTCAA 152
consensus_12911#2      ---------------------------CATTTGAATAATTATAT-TATAATCACATTCCA 32
                                                   ** * ** **   **  **  ** *  *** *

consensus_12911#0      GTAAACATTGGTCTCACT-CATATATACTCCCTCCTTCCAAAAGTCTCAGTCGTATTACG 539
consensus_12911#1      GTAAACATTGGTCTCACT-CATATATACTCCCTCCTTCCAAAAGTCTCAGTCGTATTACG 211
consensus_12911#2      GCCATAATTAATTTCCCAGCTCATACAAAAGCAAGTTCCAGCATTCA-GTTTGCAACATG 91
                       *  *  ***  * ** *  *  *** *    *   *****  * **    * * *  * *

consensus_12911#0      TTTTGCTCCAAGACCAAGGAACTCTCCGACGCATTTAACCATCGCTACATCTGCATGGAT 599
consensus_12911#1      TTTTGCTCCAAGACCAAGGAACTCTCCGACGCATTTAACCATCGCTACATCTGCATGGAT 271
consensus_12911#2      TTCCA-TACAAAAGCACAAAACATGATTACAAAATGATCCATC-------CACCATCCAA 143
                       **    * *** * **   ***      **  * * * *****       *  ***  * 

consensus_12911#0      TTAGAGGAAGCGACGCTTCGGTTGATGCACGATACGCGTGTGTGCAACACCGCAACCGTC 659
consensus_12911#1      TTAGAGGAAGCGACGCTTCGGTTGATGCACGATACGCGTGTGTGCAACACCGCAACCGTC 331
consensus_12911#2      CTACACAA------GTCCCAGCCGAC-TACAAAGTTCCTATAGGTAGTGCC--AAGTTCT 194
                        ** *  *      *   * *  **   ** *    * * *  * *   **  **     

consensus_12911#0      CGCGCCCACCGCTCGCGAATAGGCAACGGATGGATTTGCATGCATGCAAAAGAATACTGT 719
consensus_12911#1      CGCGCCCACCGCTCGCGAATAGGCAACGGATGGATTTGCATGCATGCAAAAGAATACTGT 391
consensus_12911#2      TGCACCAAAAAATTCCACCTAG-CAGCCACTACATTAACACGA--GCCATCAAATTCCAA 251
                        ** ** *    *  *   *** ** *   *  ***  ** *   ** *   *** *   

consensus_12911#0      TCGGTTGCTGAGAGGAATTAAATCCATGCATGTTTAACGAAGAGACCAGCTACACATTTA 779
consensus_12911#1      TCGGTTGCTGAGAGGAATTAAATCCATGCATGTTTAACGAAGAGACCAGCTACACATTTA 451
consensus_12911#2      ------GCTCAGA-----CACCTCATTCCTTGTCCAA--ATGCTATTATTTGTCGAAGGA 298
                             *** ***      *  **  * * ***  **  * *  *  *  *    *   *

consensus_12911#0      AAGCCTGCATGCATGCATGCAGAGTGGAATGCGCCCATCTCATCTGGAAAAACAAGAAAA 839
consensus_12911#1      AAGCCTGCATGCATGCATGCAGAGTGGAATGCGCCCATCTCATCT--------------- 496
consensus_12911#2      GGTCCTGATGGTGAAGTGAGGGATTCCCGGGCATGCATATCCTCC--------------- 343
                          ****   *          ** *     **   *** ** **                

consensus_12911#0      CCAAATACGACTGAGACTTTTGGAAGGAGGGAGTATTGACTAGGTGATTCCCCGTGCTTT 899
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      GCTGTGGGATTTACGAAGGAATTCTCAAAAAAAATGGCAATCAAGTTAGAAGTAAAAAGA 959
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      AAAAAAATAATAAAACATCAGGTTTATCAGTCAAATCATACCCATGCTTTGGTCAAGCAT 1019
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      TGACTAAAAACACACGATATTATGGATTACAAAGATTGTATGGATAATCAATATCAAAGG 1079
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      TATGGCATATAACAAAGTAGGACATTCACATATAAATAGCATGCAAACTTTATTTAAATC 1139
consensus_12911#1      ------------------------------------------------------------
consensus_12911#2      ------------------------------------------------------------
                                                                                   

consensus_12911#0      AAAATAAGTTCACAATAGGTCCAATATGCTCAAAGATTAGTGATGACTTGCCTTGCTCAC 1199
consensus_12911#1      -----------------------------------------------------TGCTCAC 503
consensus_12911#2      ----------------------------------------------------TTGCTCAC 351
                                                                            *******

consensus_12911#0      TGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAG 1259
consensus_12911#1      TGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAG 563
consensus_12911#2      TGTCTTGCTGTCCTTGTTTTGCAGTCAACTCAACCACTCCCTCGGAATCGTGCGGTGGAG 411
                       ************************************************************

consensus_12911#0      CAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTC 1319
consensus_12911#1      CAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTC 623
consensus_12911#2      CAACGGCATAGGTCGGTGATGCGCGGCACGGTGCGGGTGAAGCAGGGGCGAATCGACGTC 471
                       ************************************************************

consensus_12911#0      GGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGAT 1379
consensus_12911#1      GGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGAT 683
consensus_12911#2      GGCAGCGCACGCAGGTGTTCGACGCACTCTCCCCGACGTCCAGCGGCTCCCGGCGTTGAT 531
                       ************************************************************

consensus_12911#0      GCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCG 1439
consensus_12911#1      GCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCG 743
consensus_12911#2      GCAAGGCAGCAGAAGAAGTAGAGGCGGCCCGAGCCACAGCTCCCGCGGTCAGCTACGCCG 591
                       ************************************************************

consensus_12911#0      GCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAGGTGTTCGATGAAATGTATTC 1499
consensus_12911#1      GCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAG-------------------- 783
consensus_12911#2      GCTTCGGCTCCAACCAGTGATGATGAAGCATGCTCACAAGGTGTTCGATGAAATG----- 646
                       ****************************************                    

consensus_12911#0      GAGGAAAAGGCAGATAGGGATTTTCTACTC 1529
consensus_12911#1      ------------------------------
consensus_12911#2      ------------------------------
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)