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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1070 fasta sequence
[NGGTGTCGCCTCGCCTCGCCTCGCCCTCGCGCCGCTGCGGAATTCCGCGAGGATGGATAGGAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCAGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGCCTACGACACCGCCGTGTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCAGCTCGACGGCGCGGGTGGTGGTGGCGCGGGCGCCGGCGGCGCCGAGGACCACAGGGAGCTCACCGCCGCCGTCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCACTCCGTCGTCGGCGCCGCGGC-GCCCGTGCCGCTCCAGCCGCCGCAGCCCCCGCCGCCCCAGCGCCGCCGGACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAGTAATCCGAGCTGATTTTGCCTCCCTTCTTCCATCCATCTAGTTCGTAGTCCTTAGCCACCCCAAGACAC------AGAGAGAGAGTAGCAGCTAGTAGCTATAGCTAGTCAGCGAAGCGGATAGCGCCAAGGAGGCGGTCGTGGACGGGGGCGCACGCAAGGTGTTCGGCGAAATGCGATTGAGGTCGGAGGAGCCCACAAGTATATCCAATAATGGAG-CCGCGACGTCGCCGTCAAGCCGGGGAAGTGGTGGTTAGC-AAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAGGAGCGTGCGTGTC-AGCGTGAGCATGTAGCTAAAAGC-AAGACGGCTATGTACCTCACCCTTTTCGCTTAAGCGTTTGTTTGTAAAGAGAAGATACCCAGCAAGCAAGACAAAAAAAACAGCTTCAAGAAAAAAAAAAATCAAAAAAAAAAAAAAAA]
[+] EMBL AU083504 [NGGTGTCGCCTCGCCTCGCCTCGCCCTCGCGCCGCTGCGGAATTCCGCGAGGATGGATAGGAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCA CCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCNGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGCCTACGACACCGCCGTGTTCTA ]
[+] EMBL AU083503 [aGGTGTCGCCTCGCCTCGCCTCGCCCTCGCGCCGCNGCGGAATTCCGCGAGGATGGATAGGAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCAGTATCGCGGGGTGCGGATNCGGAAGTNGGGGAAGTNGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCNNGCTCGGCTCCTACNCCACCGCCGTC ]
[+] EMBL AK107775 [ GGATGGATAGGTGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCAGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGCCTACGACACCGCCGTGTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCAGCTCGACGGCGCGGGTGGTGGTGGCGCGGGCGCCGGCGGCGCCGAGGACCACAGGGAGCTCACCGCCGCCGTCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCACTCCGTCGTCGGCGCCGCGGC GCCCGTGCCGCTCCAGCCGCCGCAGCCCCCGCCGCCCCAGCGCCGCCGGACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAGTAATCCGTGCTAATTTTGCCTCCCTTCTTCCATCCATCTAGTTCGTAGTCCTTAGCCACCCCAAGACACAGAGAGAGAGAGAGAGTAGCAGCTAGTAGCTATAGCTAGTCAGCGAAGCAGATAGCGCCAAGGAGGCGGTCGTGGAC GGGGCGCATGCAAGGTGTTCGGCGAAATGCGATTGAGGTCGGAGGAGCCCACAAGTATATCCAATAATGGAG CCGCGACGTCGCCGTCAAGCCGGGGAAGTGGTGGTTAGC AAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAGGAGCGTGCGTGTC AGCGTGAGCATGTAGCTAAAAGC AAGACGGCTATGTACCTCACCCTTTTCGCTTAAGCGTTTGTTTGTAAAGAGAAGATACCCAGCAAGCAAGACAAAAAAAA ]
[-] EMBL BI810736 [ GCCTCAACTTCCCCGACCAGCTCGACGGCGCGGGTGGTGGTGGCGGCAGCGGCGGTGGTGCCGAGGACCACAGGGAGCTCACCGCCGCCGCCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCACTCCGTCGTCGGCGCCGCGGCTGCCCGTGCCGCTCCAGCCGCCGCAG CCCCG CGCCCCAGCGCCG CGGACCAAGAACCCCGA CTCAA CGGGAGCCCACCCCGGACACCTCCGACGACGAGTAGTAATCCGAGCTGATTTTGCCTCCCTTCTTCCATCCATCTTGTTCGTAGTCCTTAGCCACCCCAAGACAC AGAGAGAGAGTAGCAGCTAGTAGCTATAGCTAGTCAGCGAAGCGGATAGCGCCAAGGAGGCGGTCGTGGACGGGGGCGCATGCAAGGTGTTCGGCGAAATGCGATTGAG ]
[+] EMBL BI118737 [ ACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAGTAATCCGAGCTGATTTTGCCTCCCTTCTTCCATCCATCTAGTTCGTAGTCCTTAGCCACCCCAAGACAC AGAGAGAGAGTAGCAGCTAGTAGCTATAGCTAGTCAGCGAAGCGGATAGCGCCAAGGAGGCGGTCGTGGACGGGGGCGCACGCAAGGTGTTCGGCGAAATGCGATTGAGGTCGGAGGAGCCCMCAAGTATATCCAATAATGGAG CCGCGACGTCGCCGTCAAGCCGGGGAAGTGGTGGTTAGC AAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAGGAGCGTGCGTGTC AGCGTGAGCATGTAGCTAAAAGC AAGACGGCTATGTACCTCACCCTTTTCGCTTAACCGTTGGTTTGTAAAG GAAAAAA AAAAAAAAAAAAAAAAAAA ]
[+] EMBL BI118751 [ ACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAGTAATCCGAGCTGATTTTGCCTCCCTTCTTCCATCCATCTAGTTCGTAGTCCTTAGCCACCCCAAGACAC AGAGAGAGAGTAGCAGCTAGTAGCTATAGCTAGTCAGCGAAGCGGATAGCGCCAAGGAGGCGGTCGTGGACGGGGGCGCACGCAAGGTGTTCGGCGAAATGCGATTGAGGTCGGAGGAGCCCACAAGTATATCCAATAATGGAG CCGCGACGTCGCCGTCAAGCCGGGGAAGTGGTGGTTAGC AAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAGGAGCGTGCGTGTC AGCGTGAGCATGTAGCTAAAAAC AAGACGGCTATGTACCTCACCCTTTTCGCTT ]
[+] EMBL BI118746 [ ACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAGTAATCCGAGCTGATTTTGCCTCCCTTCTTCCATCCATCTAGTTCGTAGTCCTTAGCCACCCCAAGACAC AGAGAGAGAGTAGCAGCTAGTAGCTATAGCTAGTCAGCGAAGCGGATAGCGCCAAGGAGGCGGTCGTGGACAGGGGCGCACGCAAGGTGTTCGGCGAAATGCGATTGAGGTCGGAGGAGCCCACAAGTATATCCAATAATGGAGCCCGCGACGTCGCCGTCAAGCCGGGGAAGTGGTGGTTAGCAAAGTAGGAATCTAGAACTCA CTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAAGAGCGCGCGTGTCAACCGTGAGCATGTA CTTAAAGCAAAGAC GCTATGTACCTCACCCTTTTCGCTTAAGCGTTGGTTTGT ]
[+] EMBL CA998172 [ TCCAATAATGGAG CCGCGACGTCGCCGTCAAGCCGGGGAAGTGGTGGTTAGC AAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAGGAGCGTGCGTGTC AGCGTGAGCATGTAGCTAAAAGC AAGACGGCTATGTACCTCACCCTTTTCGCTTAAGCGTTTGTTTGTAAAGAGAAGATACCCAGCAAGCAAGACAAAAAAAACAGCTTCAAGAAAAAAAAA ]
[+] EMBL CB000458 [ TGGAG CCGCGACGTCGCCGTCAAGCCGGGGCATTGGTGGTTAGC AAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAGGAGCGTGCGTGTC AGCGTGAGCATGTAGCTAAAAGC AAGACGGCTATGTACCTCACCCTTTTCGCTTAAGCGTTTGTTTGTAAAGAGAAGATACCCAGCAAGCAAGACAAAAAAAACAGCTTCAAGAAAAAAAAAA ]
[+] EMBL C97807 [ GTCGCCGTCAANCCGGGGAANTGGTGGTTAGC AAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAGGANCGTGCGTGTC ANCGTGAGCATGTAGCTNAAAGC AAGACGGCTNTGTACCTCACCCTTTTCGCTTAANCGTTTGTTTGTAAAGAGNAGATNCCCAGCAAGCAAGACAAAAAAAACAGCTTCAAGAANCTCTCGAATCAAAAAAAAAAAAAAAA]
consensusID : consensus_12915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[TTAATTTTGCCTCCGTTCTTCCATCCATCTAGTTAGTAGTCCTTAGCCCCCCCAAGCCCCAGAGAGAGAGAGAGAGTAGCAGCTAGTAGTTATAGCTAGTCAGCGAAGCAGATAGCCCCACAGGAGCCGTTCGGGGACGGGGCGCATGCAAAAAGTTCGGCGAAATGCGATTGAGGTCGGAGGAGCCCCCAAGTATATCCAATAATGGAGCCGCGAGGTCGCCGTCAACCCGGGGAAGTGGCGGTTCCCAAGCTTGAATATAGGCACCAGGTGATAGTGCCTCCCTCCTCCCCCACCCCTCCCGCCTACCGGAGCCCTCACCGCCGCCGCCGCAGGCTGCTGCTGCGGCTGCGTCGGCTGCGGTGGCGGCGGGGGGGGCAAGAAGACGGTGGCCTCCCTCCTATCCATCCTCGCGGAATTCCGCAGCGG]
[-] EMBL CB659822 [TTAATTTTGCCTCCGTTCTTCCATCCATCTAGTTAGTAGTCCTTAGCCCCCCCAAGCCCCAGAGAGAGAGAGAGAGTAGCAGCTAGTAGTTATAGCTAGTCAGCGAAGCAGATAGCCCCACAGGAGCCGTTCGGGGACGGGGCGCATGCAAAAAGTTCGGCGAAATGCGATTGAGGTCGGAGGAGCCCCCAAGTATATCCAATAATGGAGCCGCGAGGTCGCCGTCAACCCGGGGAAGTGGCGGTTCCCAAGCTTGAATATAGGCACCAGGTGATAGTGCCTCCCTCCTCCCCCACCCCTCCCGCCTACCGGAGCCCTCACCGCCGCCGCCGCAGGCTGCTGCTGCGGCTGCGTCGGCTGCGGTGGCGGCGGGGGGGGCAAGAAGACGGTGGCCTCCCTCCTATCCATCCTCGCGGAATTCCGCAGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12915#0 NGGTGTCGCCTCGCCTCGCCTCGCCCTCGCGCCGCTGCGGAATTCCGCGAGGATGGATAG 60
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 GAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCA 120
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 GCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAG 180
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 GCAGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCC 240
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 GAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGC 300
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 CTACGACACCGCCGTGTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCA 360
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 GCTCGACGGCGCGGGTGGTGGTGGCGCGGGCGCCGGCGGCGCCGAGGACCACAGGGAGCT 420
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 CACCGCCGCCGTCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCA 480
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 CTCCGTCGTCGGCGCCGCGGCGCCCGTGCCGCTCCAGCCGCCGCAGCCCCCGCCGCCCCA 540
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 GCGCCGCCGGACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGA 600
consensus_12915#1 ------------------------------------------------------------
consensus_12915#0 CGAGTAGTAATCCGAGCTGATTTTGCCTCCCTTCTTCCATCCATCTAGTTCGTAGTCCTT 660
consensus_12915#1 ----------------TTAATTTTGCCTCCGTTCTTCCATCCATCTAGTTAGTAGTCCTT 44
* *********** ******************* *********
consensus_12915#0 AGCCACCCCAAGACACAGAGAGAGAG------TAGCAGCTAGTAGCTATAGCTAGTCAGC 714
consensus_12915#1 AGCCCCCCCAAGCCCCAGAGAGAGAGAGAGAGTAGCAGCTAGTAGTTATAGCTAGTCAGC 104
**** ******* * *********** ************* **************
consensus_12915#0 GAAGCGGATAGCGCCA-AGGAGGCGGTCGTGGACGGGGGCGCACGCAAGGTGTTCGGCGA 773
consensus_12915#1 GAAGCAGATAGCCCCACAGGAGCCGTTCGGGGACGGGG-CGCATGCAAAAAGTTCGGCGA 163
***** ****** *** ***** ** *** ******** **** **** *********
consensus_12915#0 AATGCGATTGAGGTCGGAGGAGCCCACAAGTATATCCAATAATGGAGCCGCGACGTCGCC 833
consensus_12915#1 AATGCGATTGAGGTCGGAGGAGCCCCCAAGTATATCCAATAATGGAGCCGCGAGGTCGCC 223
************************* *************************** ******
consensus_12915#0 GTCAAGCCGGGGAAGTGGTGGTTAGCAAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTT 893
consensus_12915#1 GTCAACCCGGGGAAGTGGCGGTTCCCAAGCTTGAATATAGGCACCAGGTGATAGTGCCTC 283
***** ************ **** **** **** *** *** * * ** *
consensus_12915#0 CCGGCGACGGCGACTGTACTAGGAGCGTGCGTG-TCAGCGTGAGCATGTAGCTAAAAGCA 952
consensus_12915#1 CCTCCTCCCCCACCCCTCCCGCCTACCGGAGCCCTCACCGC-----CGCCGCCGCAGGCT 338
** * * * * * * * * * *** ** * ** * **
consensus_12915#0 AGACGGCTATGTACCTCACCCTTTTCGCTTAAGCGTTTGTTTGTAAAGAGAAGATACCCA 1012
consensus_12915#1 G--CTGCTGCG-GCTGCGTCGGCTGCGGTGGCGGCGGGGGGGGCAAGAAGACGGTGGCCT 395
* *** * * * * * ** * * * * ** *** * * **
consensus_12915#0 GCAAGCAAGACAAAAAAAACAGCTTCAAGAAAAAAAAAAATCAAAAAAAAAAAAAAAA 1070
consensus_12915#1 CCCTCCTATCCATCCTCGCGGAATTCCGCAGCGG------------------------ 429
* * * ** *** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||