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Oryza sativa
cluster # 12931 cluster # 12931       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12931#0 length = 1597 sequences # 8  
consensus_12931#1 length = 664 sequences # 1  
consensus_12931#2 length = 572 sequences # 1  
consensus_12931#3 length = 244 sequences # 1  

consensusID : consensus_12931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1597
fasta sequence
                              [CGATGCCCTCCTCCTCCTCCTCGCTCCTCTCCGCTATCCGCCGCCTCCTCGCCTCGCTCGCGCGCTCCCCTCCTCCAGCTGCCGCCGCGGCGATGCCGCCGTCTTCGCCGGAGCCGGAGGAGGAGGGGATGGGGAGGAGCGACGCCGGCGTCGGCGGCGGCGGAGGAGGAGAAGGCGGGGGAGGGGGAGGCGGGAGGGCGCTGAGCTACGGGAAGGCGGAGTACTGGGACGCCCGCTACGTGGAGGAGGGCGGCGCGCCGTACGACTGGTACCAGCGCTACGCCGCGCTCCGCCCCTTCGTCCGCCGCTTCGCCCCGCCGGAATCCCGCGTCCTCATGATCGGCTGCGGCTCCGCTCTTATGTCAGAGGATATGGTTGATGATGGCTATACGGAGATAATGAACATTGACATTTCTTCGGTTGTAATTGAGATTATGAGAAAGAAACACTTCAATATTCCACAGCTGCAGTGTATCCTAAATTGCTTTTCCATTTTGTTTCTTTCTCCACCTCCACTGAAATTTACCATCCATTGGTCTCCTTATGACACTTAGACATGCAAATGGATGCTAGGGACATGAGTATATTTTCTGATGAATCATTTGATTGTGCCATTGATAAAGGTATGAGTTCTTAAAATGGTGTTCTAGCAATTATTGAAGCATACATGTAATGCCACTTGTTCATTTTTGTGCATTTCTTCTAGGTACTTTGGACTCATTGATGGTAAGTAGGCTACATTATTCATTGTTCCTTTTCCTTATTCTGGTACTTCTTCAACATTGTGATCTTGCTACTTCCATAGTGTGGTGTGGGTGCTCCTCTCAGCGCAGCTCAGATGGTTCTAGAAGTAGAAAGGTTTTTAATGTCTTGCTTACCCCACTAAGCTATCATTCACAGTCTCATCTGCACCAAGATACGCCATAGATTTCAATAGTGCTGCTGCAGACTCACCAGCTCAACCATTTGATTGCAGGCTTCTTAAACCA-GGAGGAATCTTTATGCT-GATAACTTATGGTGATCCATCGGTGA-GGGTACCTCATCTGAACCAATCAGGATGCAATTGGGAAAATGTACTATAC-ATTC-TGCCCAGACCCGGGTTCAAGGGCAAGACGAAAAGGTCTGTCTTAGATCCTGTTCCAATGACAGAGAGTGGTGTACTACCGGATGGCTTTGTTCCAGAGGACCCTGACTCTCACTATATCTATGTCTGCAAAAAGTTGCAAGGATCAACAGGGACAAGCTCCCCAACTATACACTACGTAGACACACAAGATACAGCAGAATGAACTTTACACTGATTCATCTTACAACGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTGCCACCATTGTGGCCATCCAAAGATGCAAAGCGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTTTTTTGTGTTGTGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGTTTTCATTCGTTGGTAATGTGAAAGCAATTGGCATTTTTTAAGGCAAAAAAAA]

[+] EMBL AK099536             [CGATGCCCTCCTCCTCCTCCTCGCTCCTCTCCGCTATCCGCCGCCTCCTCGCCTCGCTCGCGCGCTCCCCTCCTCCAGCTGCCGCCGCGGCGATGCCGCCGTCTTCGCCGGAGCCGGAGGAGGAGGGGATGGGGAGGAGCGACGCCGGCGTCGGCGGCGGCGGAGGAGGAGAAGGCGGGGGAGGGGGAGGCGGGAGGGCGCTGAGCTACGGGAAGGCGGAGTACTGGGACGCCCGCTACGTGGAGGAGGGCGGCGCGCCGTACGACTGGTACCAGCGCTACGCCGCGCTCCGCCCCTTCGTCCGCCGCTTCGCCCCGCCGGAATCCCGCGTCCTCATGATCGGCTGCGGCTCCGCTCTTATGTCAGAGGATATGGTTGATGATGGCTATACGGAGATAATGAACATTGACATTTCTTCGGTTGTAATTGAGATTATGAGAAAGAAACACTTCAATATTCCACAGCTGCAGTGTATCCTAAATTGCTTTTCCATTTTGTTTCTTTCTCCACCTCCACTGAAATTTACCATCCATTGGTCTCCTTATGACACTTAGACATGCAAATGGATGCTAGGGACATGAGTATATTTTCTGATGAATCATTTGATTGTGCCATTGATAAAGGTATGAGTTCTTAAAATGGTGTTCTAGCAATTATTGAAGCATACATGTAATGCCACTTGTTCATTTTTGTGCATTTCTTCTAGGTACTTTGGACTCATTGATGGTAAGTAGGCTACATTATTCATTGTTCCTTTTCCTTATTCTGGTACTTCTTCAACATTGTGATCTTGCTACTTCCATAGTGTGGTGTGGGTGCTCCTCTCAGCGCAGCTCAGATGGTTCTAGAAGTAGAAAGGTTTTTAATGTCTTGCTTACCCCACTAAGCTATCATTCACAGTCTCATCTGCACCAAGATACGCCATAGATTTCAATAGTGCTGCTGCAGACTCACCAGCTCAACCATTTGATTGCAGGCTTCTTAAACCA GGAGGAATCTTTATGCT GATAACTTATGGTGATCCATCGGTGA GGGTACCTCATCTGAACCAATCAGGATGCAATTGGAAAATTGTACTATAC ATTC TGCCCAGACCCGGGTTCAAGGGCAAGACGAAAAGGTCTGTCTTAGATCCTGTTCCAATGACAGAGAGTGGTGTACTACCGGATGGCTTTGTTCCAGAGGACCCTGACTCTCACTATATCTATGTCTGCAAAAAGTTGCAAGGATCAACAGGGACAAGCTCCCCAACTATACACTACGTAGACACACAAGATACAGCAGAATGAACTTTACACTGATTCATCTTACAACGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTGCCACCATTGTGGCCATCCAAAGATGCAAAGCGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTTTTTTGTGTTGTGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGTTTTCATTCGTTGGTAATGTGAAAGCAATTGGCAT                  ]
[+] EMBL CF197012             [                                                                                                                                                                                                                                                                                                                                                                                             ATGGCTATACGGAGATAATGAACATTGACATTTCTTCGGTTGTAATTGAGATTATGAGAAAGAAACACTTCAATATTCCACAGCTGCAGTGTATCCTAAATTGCTTTTCCATTTTGTTTCTTTCTCCACCTCCACTGAAATTTACCATCCATTGGTCTCCTTATGACACTTAGACATGCAAATGGATGCTAGGGACATGAGTATATTTTCTGATGAATCATTTGATTGTGCCATTGATAAAGGTATGAGTTCTTAAAATGGTGTTCTAGCAATTATTGAAGCATACATGTAATGCCACTTGTTCATTTTTGTGCATTTCTTCTAGGTACTTTGGACTCATTGATGGTAAGTAGGCTACATTATTCATTGTTCCTTTTCCTTATTCTGGTACTTCTTCAACATTGCGATCTTGCTACTTCCATAGTGTGGTGTGGGTGCTCCTCTCAGCGCNNCTCAGATGGNNNNNNNNGTNNNAAGGTTTTTAATGTCTTGCTTACCCCACTNNNCTATCATTCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU064244             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGAAGCATACATGTAATGCC CTTGTTCATTTTTGTGCATTTCTTCTAGGTACTTTGGACTCATTGATGGTAAGTAGGCTACATTATTCATTGTTCCTTTTCCTTATTCTGGTACTTCTTCAACATTGTGATCTTGCTACTTCCATAGTGTGGTGTGGGTGCTCCTCTCAGCGCAG TCAGATGGTTCTAGAAGTAGAAAGGTTTTTAATGTCTTGCTTACCCCACTAAGCTATCATTCACAGTCTCATCTGCACCAAGATACGCCATAGATTTCAATAGTGCTGCTGCAGACTCACCAGCTCAACCATTTGATTGCAGGCTTCTTAAACCAGGGGGGNATCTTTATGCTGGATAACTTATGGTGATCCATCGGTGAGGGGTACCCAATCTGAACCCATCAGGGTGCAAATGGGAAAATGTACTATACAATTCTTGCCCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU064240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGAAGCATACATGTAATGCC CTTGTTCATTTTTGTGCATTTCTTCTAGGTACTTTGGACTCATTGATGGTAAGTAGGCTACATTATTCATTGTTCCTTTTCCTTATTCTGGTACTTCTTCAACATTGTGATCTTGCTACTTCCATAGTGTGGTGTGGGTGCTCCTCTCAGCGCA NTCAGATGGTTCTAGAAGTAGAAAGGTTTTTAATGTCTTGCTTACCCCACTAAGCTATCATTCACAGTCTCATCTGCACCAAGATACGCCATAGATTTCAATAGTGCTGCTGCAGACTCACCAGCTCAACCATTTGATTGCAGGCTTCTTAAACCA GGAGGAATCTTTATGCT GATAACTTATGGTGATCCATCGGTGAGGGGTACCTCATCTGAACCAATCAGGATGCAATTGGGAAAATGTACTATAC AGTC TGCCCAGACCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB680412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGC ACATTAAAAGGTCTGTCTTAGATCCTGTTCCAATGACAGAGAGTGGTGTACTACCGGATGGCTTTGTTCCAGAGGACCCTGACTCTCACTATATCTATGTCTGCAAAAAGTTGCAAGGATCAACAGGGACAAGCTCCCCAACTATACACTACGTAGACACACAAGATACAGCAGAATGAACTTTACACTGATTCATCTTACAACGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTGCCACCATTGTGGCCATCCAAAGATGCAAAGCGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGC TTTTTTTGTGTTGTGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGTTTTCATTCGTTGGTAATGTGAAAGCAATT                       ]
[+] EMBL AU173795             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCAGAATGAACTTTACNCTGATTCATCTTACAACGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTGCCACCATTGTGGCCATCCAAAGATGCAAAGCGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTTTTTTGTGTTGTGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGTTTTCATTCGTTGGTAATGTGAAAGCAATTGGCATTTTTTAAGGCAAAAAAAA]
[+] EMBL AU181097             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTTTGTAAATTGTTATAATTTGTACAAGATCAAATNATGTGATGTTGCCACCATTGTGGCCATCCAAAGATGCAAAGCGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTTTTTTGTGTTGTGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGTTTTCATTCGTTGGTAATGTGAAAGCAATTGGCATTTTTTAAGGCANAAAAAA]
[+] EMBL OSS14445A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTGCCACCATTGTGG CATCCAAAGATGCAAAGCGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTTTTTTGTGTTGTGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGTTTTCATTCGTTGGTAATGTGAAAGCAATTGGCAT                  ]


>consensus_12931#0 CGATGCCCTCCTCCTCCTCCTCGCTCCTCTCCGCTATCCGCCGCCTCCTCGCCTCGCTCG CGCGCTCCCCTCCTCCAGCTGCCGCCGCGGCGATGCCGCCGTCTTCGCCGGAGCCGGAGG AGGAGGGGATGGGGAGGAGCGACGCCGGCGTCGGCGGCGGCGGAGGAGGAGAAGGCGGGG GAGGGGGAGGCGGGAGGGCGCTGAGCTACGGGAAGGCGGAGTACTGGGACGCCCGCTACG TGGAGGAGGGCGGCGCGCCGTACGACTGGTACCAGCGCTACGCCGCGCTCCGCCCCTTCG TCCGCCGCTTCGCCCCGCCGGAATCCCGCGTCCTCATGATCGGCTGCGGCTCCGCTCTTA TGTCAGAGGATATGGTTGATGATGGCTATACGGAGATAATGAACATTGACATTTCTTCGG TTGTAATTGAGATTATGAGAAAGAAACACTTCAATATTCCACAGCTGCAGTGTATCCTAA ATTGCTTTTCCATTTTGTTTCTTTCTCCACCTCCACTGAAATTTACCATCCATTGGTCTC CTTATGACACTTAGACATGCAAATGGATGCTAGGGACATGAGTATATTTTCTGATGAATC ATTTGATTGTGCCATTGATAAAGGTATGAGTTCTTAAAATGGTGTTCTAGCAATTATTGA AGCATACATGTAATGCCACTTGTTCATTTTTGTGCATTTCTTCTAGGTACTTTGGACTCA TTGATGGTAAGTAGGCTACATTATTCATTGTTCCTTTTCCTTATTCTGGTACTTCTTCAA CATTGTGATCTTGCTACTTCCATAGTGTGGTGTGGGTGCTCCTCTCAGCGCAGCTCAGAT GGTTCTAGAAGTAGAAAGGTTTTTAATGTCTTGCTTACCCCACTAAGCTATCATTCACAG TCTCATCTGCACCAAGATACGCCATAGATTTCAATAGTGCTGCTGCAGACTCACCAGCTC AACCATTTGATTGCAGGCTTCTTAAACCAGGAGGAATCTTTATGCTGATAACTTATGGTG ATCCATCGGTGAGGGTACCTCATCTGAACCAATCAGGATGCAATTGGGAAAATGTACTAT ACATTCTGCCCAGACCCGGGTTCAAGGGCAAGACGAAAAGGTCTGTCTTAGATCCTGTTC CAATGACAGAGAGTGGTGTACTACCGGATGGCTTTGTTCCAGAGGACCCTGACTCTCACT ATATCTATGTCTGCAAAAAGTTGCAAGGATCAACAGGGACAAGCTCCCCAACTATACACT ACGTAGACACACAAGATACAGCAGAATGAACTTTACACTGATTCATCTTACAACGTTTGT AAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTGCCACCATTGTGGCCATCCA AAGATGCAAAGCGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATCAG CGAGTCATTGTATTGTGCTACCACTGCTTTTTTTTGTGTTGTGTGGGAAGGCACAAAGAA TTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGTTTTCATTCGTTGGTA ATGTGAAAGCAATTGGCATTTTTTAAGGCAAAAAAAA



consensusID : consensus_12931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence
                              [TGATTGTGCCATTGATAAAGGTACTTTGGACTCATTGATGTGTGGTGTGGGTGCTCCTCTCAGCGCAGCTCAGATGGTTCTAGAAGTAGAAAGGCTTCTTAAACCAGGAGGAATCTTTATGCTGATAACTTATGGTGATCCATCGGTGAGGGTACCCCATCTGAACCAATCAGGATGCAATTGGAAAATTGTACTATACATTCTGCCCAGACCCGGGTTCAAGGGCAAGACGAAAGGGTCTGTCTTAGATCCTGTTCCAATGACAGAGAGTGGTGTACTACCGGATGGCTTTGTTCCAGAGGACCCTGACTCTCACTATATCTATGTCTGCAAAAAGTTGCAAGGATCAACAGGGACAAGCTCCCCAACTATACACTACGTAGACACACAAGATACAGCAGAATGAACTTTACACTGATTCATCTTACAACGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTGCCACCATTGTGGCCATCCAAAGATGCAAACGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTAAATTGTGNTGTGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGGTTG]

[+] EMBL CA767139             [TGATTGTGCCATTGATAAAGGTACTTTGGACTCATTGATGTGTGGTGTGGGTGCTCCTCTCAGCGCAGCTCAGATGGTTCTAGAAGTAGAAAGGCTTCTTAAACCAGGAGGAATCTTTATGCTGATAACTTATGGTGATCCATCGGTGAGGGTACCCCATCTGAACCAATCAGGATGCAATTGGAAAATTGTACTATACATTCTGCCCAGACCCGGGTTCAAGGGCAAGACGAAAGGGTCTGTCTTAGATCCTGTTCCAATGACAGAGAGTGGTGTACTACCGGATGGCTTTGTTCCAGAGGACCCTGACTCTCACTATATCTATGTCTGCAAAAAGTTGCAAGGATCAACAGGGACAAGCTCCCCAACTATACACTACGTAGACACACAAGATACAGCAGAATGAACTTTACACTGATTCATCTTACAACGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTGCCACCATTGTGGCCATCCAAAGATGCAAACGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTAAATTGTGNTGTGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGGTTG]


>consensus_12931#1 TGATTGTGCCATTGATAAAGGTACTTTGGACTCATTGATGTGTGGTGTGGGTGCTCCTCT CAGCGCAGCTCAGATGGTTCTAGAAGTAGAAAGGCTTCTTAAACCAGGAGGAATCTTTAT GCTGATAACTTATGGTGATCCATCGGTGAGGGTACCCCATCTGAACCAATCAGGATGCAA TTGGAAAATTGTACTATACATTCTGCCCAGACCCGGGTTCAAGGGCAAGACGAAAGGGTC TGTCTTAGATCCTGTTCCAATGACAGAGAGTGGTGTACTACCGGATGGCTTTGTTCCAGA GGACCCTGACTCTCACTATATCTATGTCTGCAAAAAGTTGCAAGGATCAACAGGGACAAG CTCCCCAACTATACACTACGTAGACACACAAGATACAGCAGAATGAACTTTACACTGATT CATCTTACAACGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTGCC ACCATTGTGGCCATCCAAAGATGCAAACGGGCCTTTGCAGGTACAAATACTTGTTGACTG ATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTAAATTGTGNTGTGT GGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTG GTTG



consensusID : consensus_12931#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence
                              [AGGCGGGAGGGCGCTGAGCTACGGGGAGGCGGAGTACTGGGACGCCCGCTACGTGGAGGAGGGCGGCGCGCCGTACGACTGGTACCAGCGCTACGCCGCGCTCCGCCCCTTCGTCCGCCGCTTCGCCCCGCCGGAATCCCGCGTCCTCATGATCGGCTGCGGCTCCGCTCTTATGTCAGAGGATATGGTTGATGATGGCTATACGGAGATAATGAACATTGACATTTCTTCGGTTGTAATTGAGATTATGAGAAAGAAACACTTCAATATTCCACAGCTGCAGTGTATCCTAAATTGCTTTTCCATTTTGTTTCTTTCTCCACCTCCACTGAAATTTACCATCCATTGGTCTCCTTATGACACTTAGACATGCAAATGGATGCTAGGGACATGAGTATATTTTCTGATGAATCATTCGATTGTGCCATTGATAAAGGTACTTTGGACTCATTGATGGTAAGTACGCTACATTATCCATTGCTCCTTTTCCTTACTCTGGTACTTCTTCAACATTGCGATCTTGCTACTTCCATAGCGTGGCGGGGGTGCTCCTCTCAGCGCAGCTCATATGG]

[+] EMBL BF430776             [AGGCGGGAGGGCGCTGAGCTACGGGGAGGCGGAGTACTGGGACGCCCGCTACGTGGAGGAGGGCGGCGCGCCGTACGACTGGTACCAGCGCTACGCCGCGCTCCGCCCCTTCGTCCGCCGCTTCGCCCCGCCGGAATCCCGCGTCCTCATGATCGGCTGCGGCTCCGCTCTTATGTCAGAGGATATGGTTGATGATGGCTATACGGAGATAATGAACATTGACATTTCTTCGGTTGTAATTGAGATTATGAGAAAGAAACACTTCAATATTCCACAGCTGCAGTGTATCCTAAATTGCTTTTCCATTTTGTTTCTTTCTCCACCTCCACTGAAATTTACCATCCATTGGTCTCCTTATGACACTTAGACATGCAAATGGATGCTAGGGACATGAGTATATTTTCTGATGAATCATTCGATTGTGCCATTGATAAAGGTACTTTGGACTCATTGATGGTAAGTACGCTACATTATCCATTGCTCCTTTTCCTTACTCTGGTACTTCTTCAACATTGCGATCTTGCTACTTCCATAGCGTGGCGGGGGTGCTCCTCTCAGCGCAGCTCATATGG]


>consensus_12931#2 AGGCGGGAGGGCGCTGAGCTACGGGGAGGCGGAGTACTGGGACGCCCGCTACGTGGAGGA GGGCGGCGCGCCGTACGACTGGTACCAGCGCTACGCCGCGCTCCGCCCCTTCGTCCGCCG CTTCGCCCCGCCGGAATCCCGCGTCCTCATGATCGGCTGCGGCTCCGCTCTTATGTCAGA GGATATGGTTGATGATGGCTATACGGAGATAATGAACATTGACATTTCTTCGGTTGTAAT TGAGATTATGAGAAAGAAACACTTCAATATTCCACAGCTGCAGTGTATCCTAAATTGCTT TTCCATTTTGTTTCTTTCTCCACCTCCACTGAAATTTACCATCCATTGGTCTCCTTATGA CACTTAGACATGCAAATGGATGCTAGGGACATGAGTATATTTTCTGATGAATCATTCGAT TGTGCCATTGATAAAGGTACTTTGGACTCATTGATGGTAAGTACGCTACATTATCCATTG CTCCTTTTCCTTACTCTGGTACTTCTTCAACATTGCGATCTTGCTACTTCCATAGCGTGG CGGGGGTGCTCCTCTCAGCGCAGCTCATATGG



consensusID : consensus_12931#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence
                              [GTGTGGTGGAGGNTGGTCCCAAGCTCGCGCGCCACCGATGCCGATGCTCCTCCCACCTCCCNTCCCCACCTATTGATGCATTGATGCCGATGCCCTCCTCCTCCTCCTCGCTCCTNTCCGNTATCCGCCGCCTCCTCGCCTCGCTCGCGCGCTCCCCTCCTCCAGCTGCCGCCGCGGCGATGCCGNCGNCTTCGCCGGAGCCGGAGGAGGAGGGGATGGGGGAGGAGGNAACGTCNAACCCGAC]

[+] EMBL AU173794             [GTGTGGTGGAGGNTGGTCCCAAGCTCGCGCGCCACCGATGCCGATGCTCCTCCCACCTCCCNTCCCCACCTATTGATGCATTGATGCCGATGCCCTCCTCCTCCTCCTCGCTCCTNTCCGNTATCCGCCGCCTCCTCGCCTCGCTCGCGCGCTCCCCTCCTCCAGCTGCCGCCGCGGCGATGCCGNCGNCTTCGCCGGAGCCGGAGGAGGAGGGGATGGGGGAGGAGGNAACGTCNAACCCGAC]


>consensus_12931#3 GTGTGGTGGAGGNTGGTCCCAAGCTCGCGCGCCACCGATGCCGATGCTCCTCCCACCTCC CNTCCCCACCTATTGATGCATTGATGCCGATGCCCTCCTCCTCCTCCTCGCTCCTNTCCG NTATCCGCCGCCTCCTCGCCTCGCTCGCGCGCTCCCCTCCTCCAGCTGCCGCCGCGGCGA TGCCGNCGNCTTCGCCGGAGCCGGAGGAGGAGGGGATGGGGGAGGAGGNAACGTCNAACC CGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      CGATGCCCTCCTCCTCCTCCTCGCTCCTCTCCGCTATCCGCCGCCTCCTCGCCTCGCTCG 60
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      CGCGCTCCCCTCCTCCAGCTGCCGCCGCGGCGATGCCGCCGTCTTCGCCGGAGCCGGAGG 120
consensus_12931#1      -----------------------------------------------TGATTGTGCCATT 13
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      AGGAGGGGATGGGGAGGAGCGACGCCGGCGTCGGCGGCGGCGGAGGAGGAGAAGGCGGGG 180
consensus_12931#1      GATAAAGGTACTTTGGACTCATTGATGTGTGGTGTGGGTGCTCCTCTCAGCGCAGCTCAG 73
                                                                                   

consensus_12931#2      -------AGGCGGGAGGGCGCTGAGCTACGGGGAGGCGGAGTACTGGGACGCCCGCTAC- 52
consensus_12931#3      ------------------------GTGTGGTGGAGGNTGGTCCCAAGCTCGCGCGCCACC 36
consensus_12931#0      GAGGGGGAGGCGGGAGGGCGCTGAGCTACGGGAAGGCGGAGTACTGGGACGCCCGCTAC- 239
consensus_12931#1      ATGGTTCTAGAAGTAGAAAGGCTTCTTAAACCAGGAGGAATCTTTATGCTGATAACTTAT 133
                                                         *               *    *    

consensus_12931#2      -GTGGAGGAGGGCGGCGCGCCGTACGACTGGTACCAGC--GCTACGCCGCGCTCCGCCCC 109
consensus_12931#3      GATGCCGATGCTCCTCCCACCTCCCNTCCCCACCTATT--GATGCATTGATGCCGATGCC 94
consensus_12931#0      -GTGGAGGAGGGCGGCGCGCCGTACGACTGGTACCAGC--GCTACGCCGCGCTCCGCCCC 296
consensus_12931#1      GGTGATCCATCGGTGAGGGTACCCCATCTGAACCAATCAGGATGCAATTGGAAAATTGTA 193
                         **                    *  *     * *    * * *               

consensus_12931#2      TTCGTCCGCCGCTTCGCCCCGC--CGGAATCCCGCGTCCTCATGA-TCGGCTGCG-GCTC 165
consensus_12931#3      CTCCTCCTCCTCCTCGCTCCTNTCCGNTATCCGCCGCCTCCTCGCCTCGCTCGCGCGCTC 154
consensus_12931#0      TTCGTCCGCCGCTTCGCCCCGC--CGGAATCCCGCGTCCTCATGA-TCGGCTGCG-GCTC 352
consensus_12931#1      CTATACATTCTGCCCAGACCCGGGTTCAAGGGCAAGACGAAAGGG-TCTGTCTTAGATCC 252
                        *   *   *    *   **        *      * *     *  **           *

consensus_12931#2      CGCTCTTATGTCAGAGGATATGGT--TGATG-ATGGCTATAC----GGAGATAATGAACA 218
consensus_12931#3      CCCTCCTCCAGCTGCCGCCGCGGCGATGCCG-NCGNCTTCGCC---GGAGCCGGAGGAGG 210
consensus_12931#0      CGCTCTTATGTCAGAGGATATGGT--TGATG-ATGGCTATAC----GGAGATAATGAACA 405
consensus_12931#1      TGTTCCAATGACAGAGAGTGGTGTACTACCGGATGGCTTTGTTCCAGAGGACCCTGACTC 312
                          **      * *        *   *   *   * **        *  *     *    

consensus_12931#2      TTGACATTTCTTCGGTTGTAA----TTGAGATTATGAGAAAGAAACACTTCAATATTCCA 274
consensus_12931#3      AGGGGATGGGGGAGGAGGNAA----CGTCNAACCCGAC---------------------- 244
consensus_12931#0      TTGACATTTCTTCGGTTGTAA----TTGAGATTATGAGAAAGAAACACTTCAATATTCCA 461
consensus_12931#1      TCACTATATCTATGTCTGCAAAAAGTTGCAAGGATCAACAGGGACAAGCTCCCCAACTAT 372
                            **      *   * **         *     *                       

consensus_12931#2      CAGCTGCAGTGTATCCTAAATTGCTTTTCCATTTTGTTTCTTTCTCCACCTCCACTGAAA 334
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      CAGCTGCAGTGTATCCTAAATTGCTTTTCCATTTTGTTTCTTTCTCCACCTCCACTGAAA 521
consensus_12931#1      ACACTACGTAGACACACAAGATACAGCAGAATGAACTTTACACTGATTCATCTTACAACG 432
                                                                                   

consensus_12931#2      TTTACCATCCATTGGTCTCCTTATGACACTTAGACATGCAAATGGATGCTAGGGACATGA 394
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      TTTACCATCCATTGGTCTCCTTATGACACTTAGACATGCAAATGGATGCTAGGGACATGA 581
consensus_12931#1      TTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGAT--GTTGCCACCATTGTGG 490
                                                                                   

consensus_12931#2      GTATATTTTCTGATGAATCATTCGATTGTGCCATTGATAAAGGTACTTTGGACTCATTGA 454
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      GTATATTTTCTGATGAATCATTTGATTGTGCCATTGATAAAGGTATGAGTTCTTAAAATG 641
consensus_12931#1      CCATCCAAAGATGCAAACGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAG 550
                                                                                   

consensus_12931#2      TGGTAAGTACGCTACATTATCCATTGCTCCTTTTCCTTACTCTGGTACTTCTTCAACATT 514
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      GTGTTCTAGCAATTATTGAAGCATACATGTAATGCCACTTGTTCATTTTTGTGCATTTCT 701
consensus_12931#1      AATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTAAATTGTGNTGTGTGGGAAGGCAC 610
                                                                                   

consensus_12931#2      GCGATCTTGCTACTTCCATAGCGTGGCGGGGGTGCTCCTCTCAGCGCAGCTCATATGG-- 572
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      TCTAGGTACTTTGGACTCATTGATGGTAAGTAGGCTACATTATTCATTGTTCCTTTTCCT 761
consensus_12931#1      AAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACATTTGGTTG------ 664
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      TATTCTGGTACTTCTTCAACATTGTGATCTTGCTACTTCCATAGTGTGGTGTGGGTGCTC 821
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      CTCTCAGCGCAGCTCAGATGGTTCTAGAAGTAGAAAGGTTTTTAATGTCTTGCTTACCCC 881
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      ACTAAGCTATCATTCACAGTCTCATCTGCACCAAGATACGCCATAGATTTCAATAGTGCT 941
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      GCTGCAGACTCACCAGCTCAACCATTTGATTGCAGGCTTCTTAAACCAGGAGGAATCTTT 1001
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      ATGCTGATAACTTATGGTGATCCATCGGTGAGGGTACCTCATCTGAACCAATCAGGATGC 1061
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      AATTGGGAAAATGTACTATACATTCTGCCCAGACCCGGGTTCAAGGGCAAGACGAAAAGG 1121
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      TCTGTCTTAGATCCTGTTCCAATGACAGAGAGTGGTGTACTACCGGATGGCTTTGTTCCA 1181
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      GAGGACCCTGACTCTCACTATATCTATGTCTGCAAAAAGTTGCAAGGATCAACAGGGACA 1241
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      AGCTCCCCAACTATACACTACGTAGACACACAAGATACAGCAGAATGAACTTTACACTGA 1301
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      TTCATCTTACAACGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATGTTG 1361
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      CCACCATTGTGGCCATCCAAAGATGCAAAGCGGGCCTTTGCAGGTACAAATACTTGTTGA 1421
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      CTGATCATGTGAGAATCAGCGAGTCATTGTATTGTGCTACCACTGCTTTTTTTTGTGTTG 1481
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      ------------------------------------------------------------
consensus_12931#3      ------------------------------------------------------------
consensus_12931#0      TGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAGGAAGAAAATGCCCTCAGAAACAT 1541
consensus_12931#1      ------------------------------------------------------------
                                                                                   

consensus_12931#2      --------------------------------------------------------
consensus_12931#3      --------------------------------------------------------
consensus_12931#0      TTGTTTTCATTCGTTGGTAATGTGAAAGCAATTGGCATTTTTTAAGGCAAAAAAAA 1597
consensus_12931#1      --------------------------------------------------------
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)