cluster # 12939

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Oryza sativa
cluster # 12939 cluster # 12939 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12939#0 length = 1990 sequences # 10

consensus_12939#1 length = 333 sequences # 1

consensusID : consensus_12939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1990
fasta sequence

                              [AGCAGCCGGCGGCGGCGATCTTTGCTTAAACCCTAATCTCAGACGCTGCCTTTGAGAGAGGAGAGGGGGGAGATCTTCTTCTTCGCTTACGGCGGGTGCAGACAATATGGCCTCAGCATTCGGGAGCACCTCAGCATGTGGCATCAAGATCACTCCTACCGCTTTTGCCACCAAGAAACATCTTTGCCTGGTTCCACCCCCAGTCGTTTCACTTCCCCGGAAAAATAGGCCTCAGAGGAAGTGTAATTTCAGAGTAAATGCTGCCAAAGAGTTATATTTCAACAAGGATGGGTTGGCTATCAAGAAGCTGCAAAATGGAGTCAATAAGCTTGCTGATCTCGTTGGAGTCACCCTTGGTCCAAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCAATGATGGTGTTACCGTTGCAAAGGAGGTTGAGCTGGAGGACCCTGTTGAAAATATTGGAGCCAAATTAGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGTTGTCCTTGCTCAAGGGATGATCACAGAGGGTGTTAAGGTTGTGGCTGCTGGTGCTAATCCAGTACAGATTACCCGTGGTATAGAGAAAACGGCCAAAGCACTTGTGAGTGAACTCCAAAAAATGTCCAAGGAGGTTGAAGACAGCGAACTTGCTGATGTTGCTGCGGTAAGTGCTGGAAATAACTACGAAATTGGCAACATGATAGCTGAAGCTATGAACAAGGTTGGACGACAGGGGGTGGTCACACTTGAAGAAGGAAAGAGTGCTGAAAATAATCTCTATGTTGTTGAGGGAATGCAATTTGATCGCGGCTATATTTCTCCCTACTTTGTAACTGACAGTGAAAAAATGTCAGTGGAGTATGAGAATTGCAAGTTGCTCCTTGTGGACAAGAAAATCAACAATGCCAGAGATCTTATAACAATTCTGGAGGATGCTATTAGGGGTGGGTACCCAATCCTAATAGTTACGGAGGATATTGAGCAGGAAGCTCTTGCAACTCTTGTGGTCAACAGGCTTAGGGGTGCATTGAAGATTGCTGCTATTAAAGCTCCTGGTTTTGGAGAACGCAAGAGTCAATACCTTGATGATATTGCTACTCTTACTGGAGGTACTGTCATCAGGGAAGAAGTTGGCTTGTCCCTAGACAAAGCTGATAGAGATGTTCTAGGAACGGCCGCCAAGGTTGTAGTTACCAAGGATTCAACAACAATAGTTGGGGATGGTACTACCCAGGACGAAGTAAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGGTTGCTGAACAGGAATATGAGAAAGAAAAACTGAATGAGAGAATAGCTAAGCTCTCTGGTGGTGTTGCTGTCATCCAGGTAGGAGCACAGACAGAAACTGAGCTTAAGGAAAAGAAACTGAGGGTTGAAGATGCACTGAATGCAACCAAGGCGGCTGTTGAGGAAGGTATTGTTGTTGGAGGTGGCTGTACGCTTTTGCGGCTTGCATCAAAAGTTGATGCCATTATAGAAACACTTGAGAATGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTAAATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTGCCAATGATAACTTCAGGTATGGTTACAATGCCGCTACAGGAAAATATGAGGATTTGATGGCTGCTGGTATTATTGATCCCACCAAGGTGGTGAGATGTTGCTTGGAGCATGCTGCGTCGGTGGCGAAAACATTCATCACATCAGATGCTGTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAGCTGCTGC-TGGGAACCCAATGG-GTGGATCAG-GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTT-TGGCA-GTTGGCAACCATTTTTACACTGGAGGCAGGCAGAATTTCACAGTTGCATCTGAGACG]

[+] EMBL AK070603             [AGCAGCCGGCGGCGGCGATCTTTGCTTAAACCCTAATCTCAGACGCTGCCTTTGAGAGAGGAGAGGGGGGAGATCTTCTTCTTCGCTTACGGCGGGTGCAGACAATATGGCCTCAGCATTCGGGAGCACCTCAGCATGTGGCATCAAGATCACTCCTACCGCTTTTGCCACCAAGAAACATCTTTGCCTGGTTCCACCCCCAGTCGTTTCACTTCCCCGGAAAAATAGGCCTCAGAGGAAGTGTAATTTCAGAGTAAATGCTGCCAAAGAGTTATATTTCAACAAGGATGGGTTGGCTATCAAGAAGCTGCAAAATGGAGTCAATAAGCTTGCTGATCTCGTTGGAGTCACCCTTGGTCCAAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCAATGATGGTGTTACCGTTGCAAAGGAGGTTGAGCTGGAGGACCCTGTTGAAAATATTGGAGCCAAATTAGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGTTGTCCTTGCTCAAGGGATGATCACAGAGGGTGTTAAGGTTGTGGCTGCTGGTGCTAATCCAGTACAGATTACCCGTGGTATAGAGAAAACGACCAAAGCACTTGTGAGTGAACTCCAAAAAATGTCCAAGGAGGTTGAAGACAGCGAACTTGCTGATGTTGCTGCGGTAAGTGCTGGAAATAACTACGAAATTGGCAACATGATAGCTGAAGCTATGAACAAGGTTGGACGACAGGGGGTGGTCACACTTGAAGAAGGAAAGAGTGCTGAAAATAATCTCTATGTTGTTGAGGGAATGCAATTTGATCGCGGCTATATTTCTCCCTACTTTGTAACTGACAGTGAAAAAATGTCAGTGGAGTATGAGAATTGCAAGTTGCTCCTTGTGGACAAGAAAATCAACAATGCCAGAGATCTTATAACAATTCTGGAGGATGCTATTAGGGGTGGGTACCCAATCCTAATAGTTACGGAGGATATTGAGCAGGAAGCTCTTGCAACTCTTGTGGTCAACAGGCTTAGGGGTGCATTGAAGATTGCTGCTATTAAAGCTCCTGGTTTTGGAGAACGCAAGAGTCAATACCTTGATGATATTGCTACTCTTACTGGAGGTACTGTCATCAGGGAAGAAGTTGGCTTGTCCCTAGACAAAGCTGATAGAGATGTTCTAGGAACGGCCGCCAAGGTTGTAGTTACCAAGGATTCAACAACAATAGTTGGGGATGGTACTACCCAGGACGAAGTAAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGGTTGCTGAACAGGAATATGAGAAAGAAAAACTGAATGAGAGAATAGCTAAGCTCTCTGGTGGTGTTGCTGTCAACCAGGTAGGAGCACAGACAGAAACTGAGCTTAAGGAAAAGAAACTGAGGGTTGAAGATGCACTGAATGCAACCAAGGCGGCTGTTGAGGAAGGTATTGTTGTTGGAGGTGGCTGTACGCTTTTGCGGCTTGCATCAAAAGTTGATGCCATTATAGAAACACTTGAGAATGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTAAATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTGCCAATGATAACTTCAGGTATGGTTACAATGCCGCTACAGGAAAATATGAGGATTTGATGGCTGCTGGTATTATTGATCCCACCAAGGTGGTGAGATGTTGCTTGGAGCATGCTGCGTCGGTGGCGAAAACATTCATCACATCAGATGCTGTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAGCTGCTGC TGGGAACCCAATGG GTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTT TGGCA GTTGGCAACCATTTTTACACTGGAGGCAGGCAGAATTTCACAGTTGCATCTGAGAC ]
[+] EMBL CB641139             [                 ATCTTTGCTTAAACCCTAATCTCAGACGCTGCCTTTGAGAGAGGAGAGGGGGGAGATCTTCTTCTTCGCTTACGGCGGGTGCAGACAATATGGCCTCAGCATTCGGGAGCACCTCAGCATGTGGCATCAAGATCACTCCTACCGCTTTTGCCACCAAGAAACATCTTTGCCTGGTTCCACCCCCAGTCGTTTCACTTCCCCGGAAAAATAGGCCTCAGAGGAAGTGTAATTTCAGAGTAAATGCTGCCAAAGAGTTATATTTCAACAAGGATGGGTTGGCTATCAAGAAGCTGCAAAATGGAGTCAATAAGCTTGCTGATCTCGTTGGAGTCACCCTTGGTCCAAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCAATGATGGTGTTACCGTTGCAAAGGAGGTTGAGCTGGAGGACCCTGTTGAAAATATTGGAGCCAAATTAGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGTTGTCCTTGCTCAAAGGATGATCACAGAGGGTGTTAAAGTTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB636907             [                 ATCTTTGCTTAAACCCTAATCTCAGACGCTGCCTTTGAGAGAGGAGAGGGGGGAGATCTTCTTCTTCGCTTACGGCGGGTGCAGACAATATGGCCTCAGCATTCGGGAGCACCTCAGCATGTGGCATCAAGATCACTCCTACCGCTTTTGCCACCAAGAAACATCTTTGCCTGGTTCCACCCCCAGTCGTTTCACTTCCCCGGAAAAATAGGCCTCAGAGGAAGTGTAATTTCAGAGTAAATGCTGCCAAAGAGTTATATTTCAACAAGGATGGGTTGGCTATCAAGAAGCTGCAAAATGGAGTCAATAAGCTTGCTGATCTCGTTGGAGTCACCCTTGGTCCAAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCAATGATGGTGTTACCGTTGCAAAGGAGGTTGAGCTGGAGGACCCTGTTGAAAATATTGGAGCCAAATTAGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSC111741            [                    TTTGCTTAAACCCTAATCTCAGACGCTGCCTTTGAGAGAGGAGAGGGGGGAGATCTTCTTCTTCGCTTACGGCGGGTGCAGACAATATGGCCTCAGCATTCGGGAGCACCTCAGCATGTGGCATCAAGATCACTCCTACCGCTTTTGCCACCAAGAAACATCTTTGCCTGGTTCCACCCCCAGTCGTTTCACTTCCCCGGAAAAATAGGCCTCAGAGGAAGTGTAATTTCAGAGTAAATGCTGCCAAAGAGTTATATTTCAACAAGGATGGGTTGGCTATCAAGAAGCTGCAAAATGGAGTCAATAAGCTTNCTGATCTCGTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK101537             [                     TTGCTTAAACCCTAATCTCAGACGCTGCCTTTGAGAGAGGAGAGGGGGGAGATCTTCTTCTTCGCTTACGGCGGGTGCAGACAATATGGCCTCAGCATTCGGGAGCACCTCAGCATGTGGCATCAAGATCACTCCTACCGCTTTTGCCACCAAGAAACATCTTTGCCTGGTTCCACCCCCAGTCGTTTCACTTCCCCAGAAAAATAGGCCTCAGAGGAAGTGTAATTTCAGAGTAAATGCTGCCAAAGAGTTATATTTCAACAAGGATGGGTTGGCTATCAAGAAGCTGCAAAATGGAGTCAATAAGCTTGCTGATCTCGTTGGAGTCACCCTTGGTCCAAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCAATGATGGTGTTACCGTTGCAAAGGAGGTTGAGCTGGAGGACCCTGTTGAAAATATTGGAGCCAAATTAGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGTTGTCCTTGCTCAAGGGATGATCACAGAGGGTGTTAAGGTTGTGGCTGCTGGTGCTAATCCAGTACAGATTACCCGTGGTATAGAGAAAACGGCCAAAGCACTTGTGAGTGAACTCCAAAAAATGTCCAAGGAGGTTGAAGACAGCGAACTTGCTGATGTTGCTGCGGTAAGTGCTGGAAATAACTACGAAATTGGCAACATGATAGCTGAAGCTATGAACAAGGTTGGACGACAGGGGGTGGTCACACTTGAAGAAGGAAAGAGTGCTGAAAATAATCTCTATGTTGTTGAGGGAATGCAATTTGATCGCGGCTATATTTCTCCCTACTTTGTAACTGACAGTGAAAAAATGTCAGTGGAGTATGAGAATTGCAAGTTGCTCCTTGTGGACAAGAAAATCAACAATGCCAGAGATCTTATAACAATTCTGGAGGATGCTATTAGGGGTGGGTACCCAATCCTAATAGTTACGGAGGATATTGAGCAGGAAGCTCTTGCAACTCTTGTGGTCAACAGGCTTAGGGGTGCATTGAAGATTGCTGCTATTAAAGCTCCTGGTTTTGGAGAACGCAAGAGTCAATACCTTGATGATATTGCTACTCTTACTGGAGGTACTGTCATCAGGGAAGAAGTTGGCTTGTCCCTAGACAAAGCTGATAGAGATGTTCTAGGAACGGCCGCCAAGGTTGTAGTTACCAAGGATTCAACAACAATAGTTGGGGATGGTACTACCCAGGACGAAGTAAACAAAAGGGTGACACAAATCAAGAACCAGATTGAGGTTGCTGAACAGGAATATGAGAAAGAAAAACTGAATGAGAGAATAGCTAAGCTCTCTGGTGGTGTTGCTGTCATCCAGGTAGGAGCACAGACAGAAACTGAGCTTAAGGAAAAGAAACTGAGGGTTGAAGATGCACTGAATGCAACCAAGGCGGCTGTTGAGGAAGGTATTGTTGTTGGAGGTGGCTGTACGCTTTTGCGGCTTGCATCAAAAGTTGATGCCATTATAGAAACACTTGAGAATGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTAAATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTGCCAATGATAACTTCAGGTATGGTTACAATGCCGCTACAGGAAAATATGAGGATTTGATGGCTGCTGGTATTATTGATCCCACCAAGGTGGTGAGATGTTGCTTGGAGCATGCTGCGTCGGTGGCGAAAACATTCATCACATCAGATGCTGTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAGCTGCTGC TGGGAACCCAATGG GTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTT TGGCA GTTGGCAACCATTTTTACACTGGAGGCAGGCAGAATTTCACAGTTGCATCTGAGAC ]
[+] EMBL CB668142             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGTTGTCCTTGCTCAAGGGATGATCACAGAGGGTGTTAAGGTTGTGGCTGCTGGTGCTAATCCAGTACAGATTACCCGTGGTATAGAGAAAACGGCCAAAGCACTTGTGAGTGAACTCCAAAAAATGTCCAAGGAGGTTGAAGACAGCGAACTTGCTGATGTTGCTGCGGTAAGTGCTGGAAATAACTACGAAATTGGCAACATGATAGCTGAAGCTATGAACAAGGTTGGACGACAGGGGGTGGTCACACTTGAAGAAGGAAAGAGTGCTGAAAATAATCTCTATGTTGTTGAGGGAATGCAATTTGATCGCGGCTATATTTCTCCCTACTTTGTAACTGACAGTGAAAAAATGTCAGTGGAGTATGAGAATTGCAAGTTGCTCCTTGTGGACAAGAAAATCAACAATGCCAGAGATCTTATAACAATTCTGGAGGATGCTATTAGGGGTGGGTACCCAATCCTAATAGTTACGGAGGATATTGAGCAGGAAGCTCTTGCAACTCTTGTGGTCAACAGGCTTAGGGGTGCATTGAAGATTGCTGCTATTAAAGCTCCTGGTTTTGGAGAACGCAAGAGTCAATACCTTGATGATATTGCTACTCTTACTGGAGGTACTGTCATCAGGGAAGAAGTTGGCTTGTCCCTAGACAAAGCTGATAGAGATGTTCTAGGAACGGCCGCCAAGGTTGTAGTTACCAAGGATTCAACAACAATAGTTGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OS2766A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAGAGAATAGCTAAGCTCTCTGGTGGTGTTGCTGTCATCCAGGTAGGAGCACAGACAGAAACTGAGCTTAAGGAAAAGAAACTGAGGGTTGAAGATGCACTGAATGCAACCAAGGCGGCTGTTGAGGAAGGTATTGTTGTTGGAGGTGGCTGTACGCTTTTGCGGCTTGCATCAAAAGTTGATGCCATTATAGAAACACTTGAGAATGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTAAATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTGCCAATGATAACTTCAGGTATGGTTACAATGNCG TACAGGAAAATATGAGGATTT NTGGCTGCTGGTATTATTGAT CCACCAAGGTGGTGAGATGTTGCTTGGNG ATG TGCGTCGGTGGCG AAACATTCATCACAT AGNTGt                                                                                                                                                                           ]
[-] EMBL CB668143             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCTGTACGCTTTTGCGGCTTGCATCAAAAGTTGATGCCATTATAGAAACACTTGAGAATGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTAAATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTGCCAATGATAACTTCAGGTATGGTTACAATGCCGCTACAGGAAAATATGAGGATTTGATGGCTGCTGGTATTATTGATCCCACCAAGGTGGTGAGATGTTGCTTGGAGCATGCTGCGTCGGTGGCGAAAACATTCATCACATCAGATGCTGTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAGCTGCTGC TGGGAACCCAATGG GTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTT TGGCA GTTGGCAACCATTTTTACACTGGAGGCAGGCAGAATTTCACAGTTGCATCTGAGACG]
[+] EMBL AU082403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               nantntnnATCCCACCAAGGT GTGAGATGTTGCTTGGAGCATGCTGCGTCGGTGGCGAAAACATTCATCACATCAGATGCTGTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAGCTGCTGC TGGGAACCCAATGG GTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTT TGGCA GTTGGCAACCATTTTTACACTGGAGGCAGGCAGAATTTCACAGTTGCATCTGAGAC ]
[+] EMBL BI805847             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAGCTGCNGCGTGGGAACCCAATGGTGTGGATCAGTGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTGTGGCATGTTGGCAACCANTTTGACACTGGAGGCAGGCAGAATTTCACAGTTGCATCTG     ]




>consensus_12939#0
AGCAGCCGGCGGCGGCGATCTTTGCTTAAACCCTAATCTCAGACGCTGCCTTTGAGAGAG
GAGAGGGGGGAGATCTTCTTCTTCGCTTACGGCGGGTGCAGACAATATGGCCTCAGCATT
CGGGAGCACCTCAGCATGTGGCATCAAGATCACTCCTACCGCTTTTGCCACCAAGAAACA
TCTTTGCCTGGTTCCACCCCCAGTCGTTTCACTTCCCCGGAAAAATAGGCCTCAGAGGAA
GTGTAATTTCAGAGTAAATGCTGCCAAAGAGTTATATTTCAACAAGGATGGGTTGGCTAT
CAAGAAGCTGCAAAATGGAGTCAATAAGCTTGCTGATCTCGTTGGAGTCACCCTTGGTCC
AAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCAATGATGG
TGTTACCGTTGCAAAGGAGGTTGAGCTGGAGGACCCTGTTGAAAATATTGGAGCCAAATT
AGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGT
TGTCCTTGCTCAAGGGATGATCACAGAGGGTGTTAAGGTTGTGGCTGCTGGTGCTAATCC
AGTACAGATTACCCGTGGTATAGAGAAAACGGCCAAAGCACTTGTGAGTGAACTCCAAAA
AATGTCCAAGGAGGTTGAAGACAGCGAACTTGCTGATGTTGCTGCGGTAAGTGCTGGAAA
TAACTACGAAATTGGCAACATGATAGCTGAAGCTATGAACAAGGTTGGACGACAGGGGGT
GGTCACACTTGAAGAAGGAAAGAGTGCTGAAAATAATCTCTATGTTGTTGAGGGAATGCA
ATTTGATCGCGGCTATATTTCTCCCTACTTTGTAACTGACAGTGAAAAAATGTCAGTGGA
GTATGAGAATTGCAAGTTGCTCCTTGTGGACAAGAAAATCAACAATGCCAGAGATCTTAT
AACAATTCTGGAGGATGCTATTAGGGGTGGGTACCCAATCCTAATAGTTACGGAGGATAT
TGAGCAGGAAGCTCTTGCAACTCTTGTGGTCAACAGGCTTAGGGGTGCATTGAAGATTGC
TGCTATTAAAGCTCCTGGTTTTGGAGAACGCAAGAGTCAATACCTTGATGATATTGCTAC
TCTTACTGGAGGTACTGTCATCAGGGAAGAAGTTGGCTTGTCCCTAGACAAAGCTGATAG
AGATGTTCTAGGAACGGCCGCCAAGGTTGTAGTTACCAAGGATTCAACAACAATAGTTGG
GGATGGTACTACCCAGGACGAAGTAAACAAAAGGGTGACACAAATCAAGAACCAGATTGA
GGTTGCTGAACAGGAATATGAGAAAGAAAAACTGAATGAGAGAATAGCTAAGCTCTCTGG
TGGTGTTGCTGTCATCCAGGTAGGAGCACAGACAGAAACTGAGCTTAAGGAAAAGAAACT
GAGGGTTGAAGATGCACTGAATGCAACCAAGGCGGCTGTTGAGGAAGGTATTGTTGTTGG
AGGTGGCTGTACGCTTTTGCGGCTTGCATCAAAAGTTGATGCCATTATAGAAACACTTGA
GAATGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTAA
ATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTGCCAA
TGATAACTTCAGGTATGGTTACAATGCCGCTACAGGAAAATATGAGGATTTGATGGCTGC
TGGTATTATTGATCCCACCAAGGTGGTGAGATGTTGCTTGGAGCATGCTGCGTCGGTGGC
GAAAACATTCATCACATCAGATGCTGTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAGC
TGCTGCTGGGAACCCAATGGGTGGATCAGGTTTTGGATTTTAGTTTAGAAGAAGAGGAGT
ACCCTTTTTGGCAGTTGGCAACCATTTTTACACTGGAGGCAGGCAGAATTTCACAGTTGC
ATCTGAGACG

consensusID : consensus_12939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [GAGNNCGGAGCTAGCGCNANCGGTTTGTCGTGCTCTTCATCCACNNAGGAGNANAGTNNGCATCNTNGGCTTAAGGNAAAGANATTTAGNGTTGNAGATTCACTGGNTGCAACCAAGGCGTCTGTTTAGGAAGGTATTGTTGTTGGAGGTGGCTGTACGCTTTTNCGGTTTGCATCAAAAGTTGATGCCATTATAGAAACACTTGAGANTGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTAAATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTNCCAATGATAAC]

[+] EMBL OSC24432             [GAGNNCGGAGCTAGCGCNANCGGTTTGTCGTGCTCTTCATCCACNNAGGAGNANAGTNNGCATCNTNGGCTTAAGGNAAAGANATTTAGNGTTGNAGATTCACTGGNTGCAACCAAGGCGTCTGTTTAGGAAGGTATTGTTGTTGGAGGTGGCTGTACGCTTTTNCGGTTTGCATCAAAAGTTGATGCCATTATAGAAACACTTGAGANTGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTAAATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTNCCAATGATAAC]




>consensus_12939#1
GAGNNCGGAGCTAGCGCNANCGGTTTGTCGTGCTCTTCATCCACNNAGGAGNANAGTNNG
CATCNTNGGCTTAAGGNAAAGANATTTAGNGTTGNAGATTCACTGGNTGCAACCAAGGCG
TCTGTTTAGGAAGGTATTGTTGTTGGAGGTGGCTGTACGCTTTTNCGGTTTGCATCAAAA
GTTGATGCCATTATAGAAACACTTGAGANTGATGAACAGAAGGTTGGGGCTGAAATCGTA
AGGAAGTCCTTGAGTTACCCACTTAAATTAATAGCAAAAAATGCTGGTGTTAACGGCAGT
GTTGTTACTGAGAAGGTCCTTNCCAATGATAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12939#0      AGCAGCCGGCGGCGGCGATCTTTGCTTAAACCCTAATCTCAGACGCTGCCTTTGAGAGAG 60
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      GAGAGGGGGGAGATCTTCTTCTTCGCTTACGGCGGGTGCAGACAATATGGCCTCAGCATT 120
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      CGGGAGCACCTCAGCATGTGGCATCAAGATCACTCCTACCGCTTTTGCCACCAAGAAACA 180
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      TCTTTGCCTGGTTCCACCCCCAGTCGTTTCACTTCCCCGGAAAAATAGGCCTCAGAGGAA 240
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      GTGTAATTTCAGAGTAAATGCTGCCAAAGAGTTATATTTCAACAAGGATGGGTTGGCTAT 300
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      CAAGAAGCTGCAAAATGGAGTCAATAAGCTTGCTGATCTCGTTGGAGTCACCCTTGGTCC 360
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      AAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCAATGATGG 420
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      TGTTACCGTTGCAAAGGAGGTTGAGCTGGAGGACCCTGTTGAAAATATTGGAGCCAAATT 480
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      AGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGT 540
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      TGTCCTTGCTCAAGGGATGATCACAGAGGGTGTTAAGGTTGTGGCTGCTGGTGCTAATCC 600
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      AGTACAGATTACCCGTGGTATAGAGAAAACGGCCAAAGCACTTGTGAGTGAACTCCAAAA 660
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      AATGTCCAAGGAGGTTGAAGACAGCGAACTTGCTGATGTTGCTGCGGTAAGTGCTGGAAA 720
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      TAACTACGAAATTGGCAACATGATAGCTGAAGCTATGAACAAGGTTGGACGACAGGGGGT 780
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      GGTCACACTTGAAGAAGGAAAGAGTGCTGAAAATAATCTCTATGTTGTTGAGGGAATGCA 840
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      ATTTGATCGCGGCTATATTTCTCCCTACTTTGTAACTGACAGTGAAAAAATGTCAGTGGA 900
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      GTATGAGAATTGCAAGTTGCTCCTTGTGGACAAGAAAATCAACAATGCCAGAGATCTTAT 960
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      AACAATTCTGGAGGATGCTATTAGGGGTGGGTACCCAATCCTAATAGTTACGGAGGATAT 1020
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      TGAGCAGGAAGCTCTTGCAACTCTTGTGGTCAACAGGCTTAGGGGTGCATTGAAGATTGC 1080
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      TGCTATTAAAGCTCCTGGTTTTGGAGAACGCAAGAGTCAATACCTTGATGATATTGCTAC 1140
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      TCTTACTGGAGGTACTGTCATCAGGGAAGAAGTTGGCTTGTCCCTAGACAAAGCTGATAG 1200
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      AGATGTTCTAGGAACGGCCGCCAAGGTTGTAGTTACCAAGGATTCAACAACAATAGTTGG 1260
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      GGATGGTACTACCCAGGACGAAGTAAACAAAAGGGTGACACAAATCAAGAACCAGATTGA 1320
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      GGTTGCTGAACAGGAATATGAGAAAGAAAAACTGAATGAGAGAATAGCTAAGCTCTCTGG 1380
consensus_12939#1      ---------------------------------GAGNNCGGAGCTAGCGCNANCGGTTTG 27
                                                        **    *    ****         * *

consensus_12939#0      TGGTGTTGCTGTCATCCAGGTAGGAGCACAGACAGAAACT-GAGCTTAAGGAAAAGAAAC 1439
consensus_12939#1      TCGTGCTCTT--CATCCACNNAGGAGNANAGTNNGCATCNTNGGCTTAAGGNAAAGANAT 85
                       * *** *  *  ******   ***** * **   * * *    ******** ***** * 

consensus_12939#0      TGAGGGTTGAAGATGCACTGAATGCAACCAAGGCGGCTGTTGAGGAAGGTATTGTTGTTG 1499
consensus_12939#1      TTAGNGTTGNAGATTCACTGGNTGCAACCAAGGCGTCTGTTTAGGAAGGTATTGTTGTTG 145
                       * ** **** **** *****  ************* ***** ******************

consensus_12939#0      GAGGTGGCTGTACGCTTTTGCGGCTTGCATCAAAAGTTGATGCCATTATAGAAACACTTG 1559
consensus_12939#1      GAGGTGGCTGTACGCTTTTNCGGTTTGCATCAAAAGTTGATGCCATTATAGAAACACTTG 205
                       ******************* *** ************************************

consensus_12939#0      AGAATGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTA 1619
consensus_12939#1      AGANTGATGAACAGAAGGTTGGGGCTGAAATCGTAAGGAAGTCCTTGAGTTACCCACTTA 265
                       *** ********************************************************

consensus_12939#0      AATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTGCCA 1679
consensus_12939#1      AATTAATAGCAAAAAATGCTGGTGTTAACGGCAGTGTTGTTACTGAGAAGGTCCTTNCCA 325
                       ******************************************************** ***

consensus_12939#0      ATGATAACTTCAGGTATGGTTACAATGCCGCTACAGGAAAATATGAGGATTTGATGGCTG 1739
consensus_12939#1      ATGATAAC---------------------------------------------------- 333
                       ********                                                    

consensus_12939#0      CTGGTATTATTGATCCCACCAAGGTGGTGAGATGTTGCTTGGAGCATGCTGCGTCGGTGG 1799
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      CGAAAACATTCATCACATCAGATGCTGTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAG 1859
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      CTGCTGCTGGGAACCCAATGGGTGGATCAGGTTTTGGATTTTAGTTTAGAAGAAGAGGAG 1919
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      TACCCTTTTTGGCAGTTGGCAACCATTTTTACACTGGAGGCAGGCAGAATTTCACAGTTG 1979
consensus_12939#1      ------------------------------------------------------------
                                                                                   

consensus_12939#0      CATCTGAGACG 1990
consensus_12939#1      -----------