These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2997 fasta sequence [GCCTTCTCGACGCCGCGTGGTCGCCGTCCGGCGAGCGGAGAGTGCGGGCGGTGGCGGTGGCGGTGGCGGTGGTGGGGAGGGGACGAGGCGGCGGGGGCATGG-TCACCATGTCGGCCGCGGCGAGCTGGACCGCCGAGGACGACGTCCTGCTGAAGAACGCCGTCGAGGCTGGTGCCTCATTGGAATCCTTGGCTAAAGGAGCTGTATGTTTTTCCCGCAAATTCACTCTTCAAGAATTACAGGATCGTTGGTCCTCATTGCTGTATGACTCAGAGACCTCAGGACAAGCATCTGCCCTCATAGTCAAGTATGAGACTGAACTTTCAACCTCCAACCCGACCAAAGCACATAAACTTTTCTACGTGAGGAGAAAACATCTTTCTCTCAGGAAGAGGAAAATTGAGAGTGTAAAGAATCAGTATTATGCAATGAGAAAGAGAATCTGCCATGATCCATGTTTGGCTGCAGATTTTGGTTATGTTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACTTGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCTATGGTCACATAGGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGACATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCACTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCATGCCAAAGAACATTCAGTCAAGTGAAAGGAATATTGCCTCTCCAAAGGACCTTTCTGATGTCCAGGACTGTGTGCAGCCTCAGCAACCAATTCTTTGTGAAGAATCAGCCAATGGAATGACAGGGTTAAAGGCTTTACTGAATACTGATCAAGATTGCATAAAACAGAACCAGTTTTCTGGTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGTGTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT-CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT-TGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATAACTTGGGGAGTGTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGGTTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATGCATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAA-GGGGGAGGATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATCAGGATTTAATTCCATGGGATCAAGAATCTGATTTCATCCAGC-TCGAAGTTTCCA-GGTTTCAGTCTCTT-GAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAAACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACTACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCGATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGGATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCACATGAAATTCATTTTTCACATCAAT-CAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCACCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAATTTGGATTTAAATTTCATCGACAAAAGTTGTTTTACTTAAAAGGGAACTGAATTCTCAAAGATGAACCCCTTGCATGCTTTAAAAAA] [+] EMBL AK073533 [GCCTTCTCGACGCCGCGTGGTCGCCGTCCGGCGAGCGGAGAGTGCGGGCGGTGGCGGTGGCGGTGGCGGTGGTGGGGAGGGGACGAGGCGGCGGGGGCATGG TCACCATGTCGGCCGCGGCGAGCTGGACCGCCGAGGACGACGTCCTGCTGAAGAACGCCGTCGAGGCTGGTGCCTCATTGGAATCCTTGGCTAAAGGAGCTGTATGTTTTTCCCGCAAATTCACTCTTCAAGAATTACAGGATCGTTGGTCCTCATTGCTGTATGACTCAGAGACCTCAGGACAAGCATCTGCCCTCATAGTCAAGTATGAGACTGAACTTTCAACCTCCAACCCGACCAAAGCACATAAACTTTTCTACGTGAGGAGAAAACATCTTTCTCTCAGGAAGAGGAAAATTGAGAGTGTAAAGAATCAGTATTATGCAATGAGAAAGAGAATCTGCCATGATCCATGTTTGGCTGCAGATTTTGGTTATGTTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACTTGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCTATGGTCACATAGGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGACATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCACTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCATGCCAAAGAACATTCAGTCAAGTGAAAGGAATATTGCCTCTCCAAAGGACCTTTCTGATGTCCAGGACTGTGTGCAGCCTCAGCAACCAATTCTTTGTGAAGAATCAGCCAATGGAATGACAGGGTTAAAGGCTTTACTGAATACTGATCAAGATTGCATAAAACAGAACCAGTTTTCTGGTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGTGTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT TGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATAACTTGGGGAGTGTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGGTTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATGCATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAA GGGGGAGGATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATCAGGATTTAATTCCATGGGATCAAGAATCTGATTTCATCCAGC TCGAAGTTTCCA GGTTTCAGTCTCTT GAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAAACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACTACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCGATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGGATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCACATGAAATTCATTTTTCACATCAAT CAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCACCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAATTTGGATTTA ] [+] EMBL CB672331 [ GGCATGGCTCTCTTTATCGGCCGCGGCGAGCTGGACCGCCGAGGACGACGTCCTGCTGAAGAACGCCGTCGAGGCTGGTGCCTCATTGGAATCCTTGGCTAAAGGAGCTGTATGTTTTTCCCGCAAATTCGCTCTTCAAGAATTACAGGATCGTTGGTCCTCATTGCTGTATGACTCATAGACCTCAGGACAAGCATCTGCCCTCATAGTCAAGTATGAGACTGAACTTTCAACCTCCAACCCGACCAAAGCACATAAACTTTTCTACGTGAGGAGAAAACATCTTTCTCTCAGGAAGAGGAAAATTGAGAGTGTAAAGAATCAGTATTATGCAATGAGAAAGAGAATCTGCCATGATCCATGTTTGGCTGCAGATTTTGGTTATGTTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACTTGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCTATGGTCACATACGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGACATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCACTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCATGCCAAAGAACATTCAATCAAGTGCAAGGAATATTGCCTCTCCAGAGGACCTTTCTGATGTCCAGGACTGTGTGCAGCCTCAGCAAC ] [+] EMBL AK067037 [ ATGATCCATGTTTGGCTGCAGATTTTGGTTATGTTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACTTGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCTATGGTCACATAGGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGACATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCACTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCATGCCAAAGAACATTCAGTCAAGTGAAAGGAATATTGCCTCTCCAAAGGACCTTTCTGATGTCCAGGACTGTGTGCAGCCTCAGCAACCAATTCTTTGTGAAGAATCAGCCAATGGAATGACAGGGTTAAAGGCTTTACTGAATACTGATCAAGATTGCATAAAACAGAACCAGTTTTCTGGTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGTGTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT TGGTGGGTCTTAGTGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATAACTTGGGGAGTGTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGGTTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATGCATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAA AGGGGAGGATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATCAGGATTTAATTCCATGGGATCAAGAGTCTGATTTCATCCAGC TCGAAGTTTCCA GGTTTCAGTCTCTT GAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAAACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACTACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCGATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGGATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCACATGAAATTCATTTTTCACATCAAT CAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCACCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAATTTGGATTTA ] [+] EMBL CF304388 [ AAGATTGCATAAAACAGAACCAGTTTTCTGGTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGTGTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGATCCCTG AATCCCTTGCAATGATGATATCTTTACA ] [+] EMBL C71863 [ GTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTNCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTNTGGTTCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTNAGCTACTTAATAGCGAGAATATTTTGGATTCTNCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGANATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGG ] [+] EMBL CF323040 [ GAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTTNTGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCC ] [+] EMBL CF323472 [ TGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT TGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAA ] [+] EMBL CB096809 [ agGGGGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT TGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATAACTTGGGGA GTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGGTTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATGCATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAAGGGGGGAGGATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATCAGGATTTAATTCCATGGGATCAAGAATCTGATTTCATCCAGCTTCGAAGTTTTCAGGGTTTCAGTCTCTTGGAAAGTAGGAAAGACT ] [-] EMBL CB672332 [ AGC TCGAAGTTTCCA GGTTTCAGTCTCTT GAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAAACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACTACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCGATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGGATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCACATGAAATTCATTTTTCACATCAAT CAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCCCCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAAAAAGGATTTAAATTTCATCGACAAAAGTTGTTTTACTTAAAA ] [+] EMBL C98631 [ CTCCAATNTTCGTCAATNGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCAC TGAAATTCATTTTTCACATCAATCCAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCACCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAATTTGGATTTAAATTTCATCGACAAAAGTTGTTTTAGTGGACTGGGAACTGAATTCTCAAAGATGAACCCCTTGCATGCTTTAAAAAA] consensusID : consensus_12956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [TTGCCTACCAATATACCGTAATTATACGGANAAAAGCCGTCCAAGCNTTTCTGTCACATTGACGCCCAAAANGAAGTTCCATTGGCCACCGGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCTACATGGAAANNCATGTTTTCACATCAATCAGGATGCCGTGAGGCTAACATATAGTTCTNCAGTAGNGAGAGGAACCTCCCAAGGCAAGTACGCTAGTATTTATATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCCATGGTGTGAATTTATTGTGCAGTGAATGATGATGATGCGGCAGGGATACGAAGTATATGAGCACCACTNATGCTGAATTGCGGTCCCATCCTGTTGCATGGTGAAATCCGTTGTGATATTTGCCATGCTTGATCATTTGAGTATGATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGNTTTTATGTTTGAAATTTGGATTTAAACCTCCTCGAAAAAAAAAAA] [+] EMBL BI806967 [TTGCCTACCAATATACCGTAATTATACGGANAAAAGCCGTCCAAGCNTTTCTGTCACATTGACGCCCAAAANGAAGTTCCATTGGCCACCGGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCTACATGGAAANNCATGTTTTCACATCAATCAGGATGCCGTGAGGCTAACATATAGTTCTNCAGTAGNGAGAGGAACCTCCCAAGGCAAGTACGCTAGTATTTATATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCCATGGTGTGAATTTATTGTGCAGTGAATGATGATGATGCGGCAGGGATACGAAGTATATGAGCACCACTNATGCTGAATTGCGGTCCCATCCTGTTGCATGGTGAAATCCGTTGTGATATTTGCCATGCTTGATCATTTGAGTATGATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGNTTTTATGTTTGAAATTTGGATTTAAACCTCCTCGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12956#0 GCCTTCTCGACGCCGCGTGGTCGCCGTCCGGCGAGCGGAGAGTGCGGGCGGTGGCGGTGG 60 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 CGGTGGCGGTGGTGGGGAGGGGACGAGGCGGCGGGGGCATGGTCACCATGTCGGCCGCGG 120 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 CGAGCTGGACCGCCGAGGACGACGTCCTGCTGAAGAACGCCGTCGAGGCTGGTGCCTCAT 180 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 TGGAATCCTTGGCTAAAGGAGCTGTATGTTTTTCCCGCAAATTCACTCTTCAAGAATTAC 240 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 AGGATCGTTGGTCCTCATTGCTGTATGACTCAGAGACCTCAGGACAAGCATCTGCCCTCA 300 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 TAGTCAAGTATGAGACTGAACTTTCAACCTCCAACCCGACCAAAGCACATAAACTTTTCT 360 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ACGTGAGGAGAAAACATCTTTCTCTCAGGAAGAGGAAAATTGAGAGTGTAAAGAATCAGT 420 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ATTATGCAATGAGAAAGAGAATCTGCCATGATCCATGTTTGGCTGCAGATTTTGGTTATG 480 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 TTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACT 540 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 TGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCT 600 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ATGGTCACATAGGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGAC 660 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCA 720 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 CTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCA 780 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 TGCCAAAGAACATTCAGTCAAGTGAAAGGAATATTGCCTCTCCAAAGGACCTTTCTGATG 840 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 TCCAGGACTGTGTGCAGCCTCAGCAACCAATTCTTTGTGAAGAATCAGCCAATGGAATGA 900 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 CAGGGTTAAAGGCTTTACTGAATACTGATCAAGATTGCATAAAACAGAACCAGTTTTCTG 960 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 GTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGT 1020 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 GTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACA 1080 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 TGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAA 1140 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 AGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTG 1200 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 GATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCA 1260 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 GTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACC 1320 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 CAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAG 1380 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 AGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCC 1440 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGC 1500 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 CTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGATCCTGAAATCCCTTGCA 1560 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCAC 1620 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 AGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGA 1680 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTT 1740 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ACACCTTGGAACAAAAGGAAACTTTGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCA 1800 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 AGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATT 1860 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 CTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATA 1920 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ACTTGGGGAGTGTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGG 1980 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 TTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATG 2040 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 CATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAAGGGGGAG 2100 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 GATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATC 2160 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 AGGATTTAATTCCATGGGATCAAGAATCTGATTTCATCCAGCTCGAAGTTTCCAGGTTTC 2220 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 AGTCTCTTGAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAA 2280 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACT 2340 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCG 2400 consensus_12956#1 ------------------------------------------------------------ consensus_12956#0 ATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGG 2460 consensus_12956#1 ------------------------------TTGCCTACCAATATACCGTAATTAT-ACGG 29 * ** *** * * * ** * * ** consensus_12956#0 ATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCA 2520 consensus_12956#1 ANAAAAGCCG-----TCCA---AGCNTTTCTG--------TCACATTGACGCCCAA---A 70 * *** * * **** * * * * ** ** ** * * * consensus_12956#0 AAGAAGTTCCAT--GCAAC--GAATGCACTCACTTAATTTCTGATGCATTACTTCAGATA 2576 consensus_12956#1 ANGAAGTTCCATTGGCCACCGGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATA 130 * ********** ** ** *************************************** consensus_12956#0 AGGC-ACATG-AAATTCAT-TTTTCACATCAATCAGGATGCCGTGAGGC-AACATATAGT 2632 consensus_12956#1 AGGCTACATGGAAANNCATGTTTTCACATCAATCAGGATGCCGTGAGGCTAACATATAGT 190 **** ***** *** *** ***************************** ********** consensus_12956#0 TC-GCAGTAGG-AGAGGAACCTCCCAAGGCAAGTACGC-AGTATTTA-ATTGGGATGAAA 2688 consensus_12956#1 TCTNCAGTAGNGAGAGGAACCTCCCAAGGCAAGTACGCTAGTATTTATATTGGGATGAAA 250 ** ****** ************************** ******** ************ consensus_12956#0 AGCCATGAATTAAGGTTACGATCAAGCTC-ATG-TGTGAATTTATTGT-CAGTAATATAT 2745 consensus_12956#1 AGCCATGAATTAAGGTTACGATCAAGCTCCATGGTGTGAATTTATTGTGCAGTGAATGAT 310 ***************************** *** ************** **** * ** consensus_12956#0 AT-----CGGCAGG-ATA-GAAGTATAT-AGCACCATATCT----AATT-CGGTCCCATC 2792 consensus_12956#1 GATGATGCGGCAGGGATACGAAGTATATGAGCACCACTNATGCTGAATTGCGGTCCCATC 370 ******* *** ********* ******* * **** ********** consensus_12956#0 CT-TTGCATGT---AAATCGTTGT-ATATTT-CCATGCTT-ATCATTT-AGTAT-ATAAT 2843 consensus_12956#1 CTGTTGCATGGTGAAATCCGTTGTGATATTTGCCATGCTTGATCATTTGAGTATGATAAT 430 ** ******* ** ****** ****** ******** ******* ***** ***** consensus_12956#0 AGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATG 2903 consensus_12956#1 AGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGNTTTTATG 490 **************************************************** ******* consensus_12956#0 TTTGAAATTTGGATTTAAATTTCATCGACAAAAGTTGTTTTACTTAAAAGGGAACTGAAT 2963 consensus_12956#1 TTTGAAATTTGGATTTAAACCTCCTCGAAAAAAAAAAA---------------------- 528 ******************* ** **** **** consensus_12956#0 TCTCAAAGATGAACCCCTTGCATGCTTTAAAAAA 2997 consensus_12956#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||