These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12961#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2905 fasta sequence [GAGGGGCCGAGGACGCGGCTCATCGCGCAGAACATCCCCTGGGACTGCACGGCGGACGACATGCGCGCGCTCTTCGGGAAGCACGGCTCTGTCGTCGATGTCGAGCTCTCGATGTACAATTCGACCAGAAACAGAGGATTGGCGTTTGTAACCATGGGTTCAGAAGAGGAGGCTCTTTCAGCACTCAACCATCTAAATTCGACTACTCTAAATGATAGAACAATTAAGGTAGACTTTACTAGATCGAGAAAGAAGCAGTATGTTGTGCCATCAGCTCCCATGCCGAAGCACAGCGTTTTTGTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATCTACCTTCAATGGCACGAAATTGATGGGAAGATCCATTAACGTGATGTTCAAAGATGACAATGCCAAAAAGAATAAATCTGCTGCACCAAC-GGAAGAGGATCTGAAGGCAGAATCATCTGAGCAGATTGTTAGCTAAGCATCAATTGTCATGGGAACACACCGAGAACTTAAATGATTGAGGATTG-CTTAACTGACATTTTCCC-AGTCTCCC-AGCTGCTGGTC-AGTTTTGCTCATTCAACGCCTCGTGA-GTTCTATATTA-CAGCGTTGTTTATGCTGTCCACTTGATATGGATGACATATGACATTTGGAGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACACCCAGGTTAATTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGATAATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCACCGGGATAACTTTAAAGGCTAAAAGCTACTACTGGTATTGTTTTCAGTCTGTACTTGTCTTCGTTTTTATGTGACCGGAAGATTGTAGAGGCCGGGTTTAATCTAATCCATTATCTAAAATAAATGTGACCGGAAGAACTGTGACAACTGTCAAATTAATATATAGCCTTCACATCAGTTCCAAATTGCACGCTTGGTGTGCTATCCTTAAAGGTTGCCGTGCAGTACAGACCCAAGGTTCTTCAGTAACCAAACGGGCTAGTACATCTGCGTCACGAGCGGTCCGACGAAACATCTGTGAGCAATACTGAACTGTGCTGAATCAATTATTGTCCAGTCTTCCGTCCCCATCTGTCTATTCTTAGCTCAGAAAGTATCCTCTTTAATAATCTGATAATCTTGTAGTACTAAGCTTGTTGATTGTGAATGTGCTGCAGATATTTAGGTCCATTCTTTTTTTAGTGGATTTATGTTGGTTCTAAAGATACGCTGAACCTCCCTCTTAACCTGGACCTAGTCCTAAGAGCAAAGTTAATAGTATAGCCAACTACTAGCTACAATTCATCTATAACTAATCTAATAGTTAATTCATACAATAGTTGCTTACTATACTATTAGTATATAGTCCCACTGTCATATACACATTATGTCTTGGAGTCCGTGCTGCAGCGGGCTACAGAAGCTGTTCTTCTCTCTCATCTTTTATCTTATTAAAATATGTTTGTAGCTGGCTAATAGTATGCTATTGTACCTGCTCTAAGAGCACCCGCAATGGTAAAGTAAGGTGCTCTCTATAAAACATGTATATCTCAGTAATAGATTAGATTAATAGTAAACCACCTCAATAGTATTTCTACATGGGTATCTATAGCTCTCTCATCCATTGTCTTGTTTTTCTCTATAGACTCTCCAGGTTAGTAGATAGCTTTACTCTCTCTCTCCATTTAATCTCTTACAAGTAGGAAAATACGATTATCTTTTATAGAGAGCATATAGATAACCATTGCGGGTGCTCTAATAACACTAGCTAAGCGCAAACTCCGAGTTATCCATTTCGCAGCATTTACCTTGACGGAGTGGACCTGAAACGCTAAACGCATGAGCAAACGTGTACGGAACTCCTTTGGTCAATCGTTGGATTATCCATCTGAAACTCCTTTTGTTTTCGCCGGGATACCCGTATGAAACTCCTGCATCCGTCGCCTTCATTCGCACCGGTGATACCGTACTCATTTGGCCGGCAGACCAAACATAGTGGATTAGTGGACACTTATGTGTTGAGAATACCGTGCCGGTCCTTTGCGAAAGCACATGTAACGCCTAGGAAAGCAAGGAGCAGAAGCAATCTGCTTGTCTTGTGTGCGACAACGAGGCCAGTGCGTTGTCCTCGCACCAAGCGACCGCCTCGCCGCCGATTGTTCCGTGCGACGCCACACCGAAACCGAACCGGGACAACCTATTTAATCTTTCAACAAATTTAAACCTTCAAATCTTGAAAAGTTTTCAACCAATGGATGCAATTCATTTTAAATAAAATAATTAAAAAGCATATCAAAAATAATAAATCTAGATATAAAAAGAGTTGTATAATCTAATTCCACTATACTTACGTAGATAAAACACTGTTTTACGTAAAACGATATGGCATTAATGTATAATTAATAGAGTTTTAATTATCATAACCTTAAAAATTTATTTATAGCAACTTTCATATAAAAAGTTTTTTAATGAAATATACCGTTTAGCAGTTTGAAAAACACGTGATTATCTAAATTTTTATCCAATTTTTATTACATAAAAAAGACCTAAATTTACAAGAATATTCTCTCTCTCCGTCCCATAATATAAGTTATTTTGGAGAGATATTTATTTTGGAGAGATATGACACAATCTAATACTACCAATCTAGAGTACCAGATTATTATGATACATTCCTTTAAAATTAATTATATTTTGATATAAAAT] [+] EMBL AK072137 [GAGGGGCCGAGGACGCGGCTCATCGCGCAGAACATCCCCTGGGACTGCACGGCGGACGACATGCGCGCGCTCTTCGGGAAGCACGGCTCTGTCGTCGATGTCGAGCTCTCGATGTACAATTCGACCAGAAACAGAGGATTGGCGTTTGTAACCATGGGTTCAGAAGAGGAGGCTCTTTCAGCACTCAACCATCTAAATTCGACTACTCTAAATGATAGAACAATTAAGGTAGACTTTACTAGATCGAGAAAGAAGCAGTATGTTGTGCCATCAGCTCCCATGCCGAAGCACAGCGTTTTTGTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATCTACCTTCAATGGCACGAAATTGATGGGAAGATCCATTAACGTGATGTTCAAAGATGACAATGCCAAAAAGAATAAATCTGCTGCACCAAC GGAAGAGGATCTGAAGGCAGAATCATCTGAGCAGATTGTTAGCTAAGCATCAATTGTCATGGGAACACACCGAGAACTTAAATGATTGAGGATTG CTTAACTGACATTTTCCC AGTCTCCC AGCTGCTGGTC AGTTTTGCTCATTCAACGCCTCGTGA GTTCTATATTA CAGCGTTGTTTATGCTGTCCACTTGATATGGATGACATATGACATTTGGAGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACACCCAGGTTAATTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGATAATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCACCGGGATAACTTTAAAGGCTAAAAGCTACTACTGGTATTGTTTTCAGTCTGTACTTGTCTTCGTTTTTATGTGACCGGAAGATTGTAGAGGCCGGGTTTAATCTAATCCATTATCTAAAATAAATGTGACCGGAAGAACTGTGACAACTGTCAAATTAATATATAGCCTTCACATCAGTTCCAAATTGCACGCTTGGTGTGCTATCCTTAAAGGTTGCCGTGCAGTACAGACCCAAGGTTCTTCAGTAACCAAACGGGCTAGTACATCTGCGTCACGAGCGGTCCGACGAAACATCTGTGAGCAATACTGAACTGTGCTGAATCAATTATTGTCCAGTCTTCCGTCCCCATCTGTCTATTCTTAGCTCAGAAAGTATCCTCTTTAATAATCTGATAATCTTGTAGTACTAAGCTTGTTGATTGTGAATGTGCTGCAGATATTTAGGTCCATTCTTTTTTTAGTGGATTTATGTTGGTTCTAAAGATACGCTGAACCTCCCTCTTAACCTGGACCTAGTCCTAAGAGCAAAGTTAATAGTATAGCCAACTACTAGCTACAATTCATCTATAACTAATCTAATAGTTAATTCATACAATAGTTGCTTACTATACTATTAGTATATAGTCCCACTGTCATATACACATTATGTCTTGGAGTCCGTGCTGCAGCGGGCTACAGAAGCTGTTCTTCTCTCTCATCTTTTATCTTATTAAAATATGTTTGTAGCTGGCTAATAGTATGCTATTGTACCTGCTCTAAGAGCACCCGCAATGGTAAAGTAAGGTGCTCTCTATAAAACATGTATATCTCAGTAATAGATTAGATTAATAGTAAACCACCTCAATAGTATTTCTACATGGGTATCTATAGCTCTCTCATCCATTGTCTTGTTTTTCTCTATAGACTCTCCAGGTTAGTAGATAGCTTTACTCTCTCTCTCCATTTAATCTCTTACAAGTAGGAAAATACGATTATCTTTTATAGAGAGCATATAGATAACCATTGCGGGTGCTCTAATAACACTAGCTAAGCGCAAACTCCGAGTTATCCATTTCGCAGCATTTACCTTGACGGAGTGGACCTGAAACGCTAAACGCATGAGCAAACGTGTACGGAACTCCTTTGGTCAATCGTTGGATTATCCATCTGAAACTCCTTTTGTTTTCGCCGGGATACCCGTATGAAACTCCTGCATCCGTCGCCTTCATTCGCACCGGTGATACCGTACTCATTTGGCCGGCAGACCAAACATAGTGGATTAGTGGACACTTATGTGTTGAGAATACCGTGCCGGTCCTTTGCGAAAGCACATGTAACGCCTAGGAAAGCAAGGAGCAGAAGCAATCTGCTTGTCTTGTGTGCGACAACGAGGCCAGTGCGTTGTCCTCGCACCAAGCGACCGCCTCGCCGCCGATTGTTCCGTGCGACGCCACACCGAAACCGAACCGGGACAACCTATTTAATCTTTCAACAAATTTAAACCTTCAAATCTTGAAAAGTTTTCAACCAATGGATGCAATTCATTTTAAATAAAATAATTAAAAAGCATATCAAAAATAATAAATCTAGATATAAAAAGAGTTGTATAATCTAATTCCACTATACTTACGTAGATAAAACACTGTTTTACGTAAAACGATATGGCATTAATGTATAATTAATAGAGTTTTAATTATCATAACCTTAAAAATTTATTTATAGCAACTTTCATATAAAAAGTTTTTTAATGAAATATACCGTTTAGCAGTTTGAAAAACACGTGATTATCTAAATTTTTATCCAATTTTTATTACATAAAAAAGACCTAAATTTACAAGAATATTCTCTCTCTCCGTCCCATAATATAAGTTATTTTGGAGAGATATTTATTTTGGAGAGATATGACACAATCTAATACTACCAATCTAGAGTACCAGATTATTATGATACATTCCTTTAAAATTAATTATATTTTGATATAAAAT] [+] EMBL AK068161 [GAGGGGCCGAGGACGCGGCTCATCGCGCAGAACATCCCCTGGGACTGCACGGCGGACGACATGCGCGCGCTCTTCGGGAAGCACGGCTCTGTCGTCGATGTCGAGCTCTCGATGTACAATTCGACCAGAAACAGAGGATTGGCGTTTGTAACCATGGGTTCAGAAGAGGAGGCTCTTTCAGCACTCAACCATCTAAATTCGACTACTCTAAATGATAGAACAATTAAGGTAGACTTTACTAGATCGAGAAAGAAGCAGTATGTTGTGCCATCAGCTCCCATGCCGAAGCACAGCGTTTTTGTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATCTACCTTCAATGGCACGAAATTGATGGGAAGATCCATTAACGTGATGTTCAAAGATGACAATGCCAAAAAGAATAAATCTGCTGCACCAAC GGAAGAGGATCTGAAGGCAGAATCATCTGAGCAGATTGTTAGCTAAGCATCAATTGTCATGGGAACACACCGAGAACTTAAATGATTGAGGATTG CTTAACTGACATTTTCCC AGTCTCCC AGCTGCTGGTC AGTTTTGCTCATTCAACGCCTCGTGA GTTCTATATTA CAGCGTTGTTTATGCTGTCCACTTGATATGGATGACATATGACATTTGGAGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACACCCAGGTTAATTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGATAATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCACCGGGATAACTTTAAAGGCTAAAAGCTACTACTGGTATTGTTTTCAGTCTGTACTTGTCTTCGTTTTTATGTGACCGGAAGATTGTAGAGGCCGGGTTTAATCTAATCCATTATCTAAAATAAATGTGACCGGAAGAACTGTGACAACTGTCAAATTAATATATAGCCTTCACATCAGT ] [+] EMBL AU082631 [GAGGGGCCGAGGACGCGGCTCATCGCGCAGAACATCCCCTGGGACTGCACGGCGGACGACATGCGCGCGCTCTTCGGGAAGCACGGCTCTGTCGTCGATGTCGAGCTCTCGATGTACAATTCGACCAGAAACAGAGGATTGGCGTTTGTAACCATGGGTTCAGAAGAGGAGGCTCTTTCAGCACTCAACCATCTAAATTCGACTACTCTAAATGATAGAACAATTAAGGTAGACTTTACTAGATCGAGAAAGAAGCAGTATGTTGTGCCATCAGCTCCCATGCCGAAGCACAGCGTTTTTGTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATCTACCTTCAATGGCACGAAATTGATGGGAAGATCCATTAACGTGATGTTCAAAGATGACAATGCCAAAAAGAATAAATCTGCTGCACCAACGGGAAGAAGATCTGAANGCAGAATCAT ] [+] EMBL CB653210 [GAGGGGCCGAGGACGCGGCTCATCGCGCAGAACATCCCCTGGGACTGCACGGCGGACGACATGCGCGCGCTCTTCGGGAAGCACGGCTCTGTCGTCGATGTCGAGCTCTCGATGTACAATTCGACCAGAAACAGAGGATTGGCGTTTGTAACCATGGGTTCAGAAGAGGAGGCTCTTTCAGCACTCAACCATCTAAATTCGACTACTCTAAATGATAGAACAATTAAGGTAGACTTTACTAGATCGAGAAAGAAGCAGTATGTTGTGCCATCAGCTCCCATGCCGAAGCACAGCGTTTTTGTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATC ] [-] EMBL AU094743 [ AGGGGCCGAGGACGCGGCTCATCGCGCAGAACATCCCCTGGGACTGCACGGCGGACGACATGCGCGCGCTCTTCGGGAAGCACGGCTCTGTCGTCGATGTCGAGCTCTCGATGTACAATTCGACCAGAAACAGAGGATTGGCGTTTGTAACCATGGGTTCAGAAGAGGAGGCTCTTTCAGCACTCAACCATCTAAATTCGACTACTCTAAATGATAGAACAATTAAGGTAGACTTTACTAGATCGAGAAAGAAGCAGTATGTTGTGCCATCAGCTC ] [+] EMBL OSC226 [ CACGGCGGACGACATGCGCGCGCTCTTCGGGAAGCACGGCTCTGTCGTCGATGTCGAGCTCTCGATGTACAATTCGACCAGAAACAGAGGATTGGCGTTTGTAACCATGGGTTCAGAAGAGGAGGCTCTTTCAGCACTCAACCATCTAAATTCGACTACTCTAAATGATAGAACAATTAAGGTAGACTTTACTAGATCGAGAAAGAAGCAGTATGTTGTGCCATCAGCTCCCATGCCGAAGCACAGCGTTTTTGTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCG TCTGCTGGTTATGGATTTGTTTCCTTTTCCTC AAAGAGGCAGCAGA GCTNCCATATCTACCTTCAATGGCACGGAA ] [+] EMBL AU069227 [ ntaAAATGATTGAGGAATGCCTNAACTGACATTTTCCCAAGTCTCCCNAGCTGCTGGTCAAGTTTTGCTCATTCAACGCCTCGTGAGGTCCTATATTACCAGCGTTGTTTATGCTGNCCACTTGATATGGATGACATATGACATTTGGAGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACACCCAGGTTAATTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGATAATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCACCGGGATAACTTTAAAGGCTAAAAGCTACTACTGGTATTGTTTTCAGTCTGTACTTGTCTTCGTTTTTATGTGACCGGAAGATTGTAGAGGCCGGGTTTAATCTAATCCATTATCTAAAA ] consensusID : consensus_12961#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [CAGCGTTTTTGTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATCTACCTTCAATGGCACGGTAAGTATTCTGAAATGTAGCTTAGAAATAAAATATAGTACAAGTNTTGGTTTGTGTACGGCCCAAATNCTAATACATGATTGTGTNTTGATGCTATNTCTGACCTATGAAATATATCACAGAAATNGATGGGAAGATCCATNAACGTGATGTNCAAAGATGACAATGCCAAAAAGAATAAATCTGCTGCACCAACGGAAGAGGATCTGAAGGCAGAATCATCTGAGCAGATNGTNNAGCTAGCATCAATGGTCATGGGAACACACCGAGAACTNANATGATNGAGGATNNGCTNACTGACATTNTTCCAGTCTCCCAGCTGCTGGTCAGTNNTGCTCATTCACGCCTCGTGAGTTCTATATTACAGCGTTNGTNATGCTGNTCACTGATATGGATGACNTATGACATNGGAGGTCGCNTNATGCATGAGCACAAATATATGTAGCCTTCTGACCCCAGNTNANNTATGTNAAGAGAATAGCTCAGATCAGCGTACGAGATACANTGTANTGACATCGGCGANGTTAAGTCGGNATCNTANGGCTAGC] [+] EMBL CA753002 [CAGCGTTTTTGTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATCTACCTTCAATGGCACGGTAAGTATTCTGAAATGTAGCTTAGAAATAAAATATAGTACAAGTNTTGGTTTGTGTACGGCCCAAATNCTAATACATGATTGTGTNTTGATGCTATNTCTGACCTATGAAATATATCACAGAAATNGATGGGAAGATCCATNAACGTGATGTNCAAAGATGACAATGCCAAAAAGAATAAATCTGCTGCACCAACGGAAGAGGATCTGAAGGCAGAATCATCTGAGCAGATNGTNNAGCTAGCATCAATGGTCATGGGAACACACCGAGAACTNANATGATNGAGGATNNGCTNACTGACATTNTTCCAGTCTCCCAGCTGCTGGTCAGTNNTGCTCATTCACGCCTCGTGAGTTCTATATTACAGCGTTNGTNATGCTGNTCACTGATATGGATGACNTATGACATNGGAGGTCGCNTNATGCATGAGCACAAATATATGTAGCCTTCTGACCCCAGNTNANNTATGTNAAGAGAATAGCTCAGATCAGCGTACGAGATACANTGTANTGACATCGGCGANGTTAAGTCGGNATCNTANGGCTAGC] consensusID : consensus_12961#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence [CCATGCCGAAGCACAGCGTTTTTGTGGGTAATCTGACGCGGAGAGTGAGATCTCGCCATCTTTGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTCCCATATCTACCTTCAATGGCCCGAAATTGATGGGAAGATCCATTAACGTGATGTTCAAAGATGACAATGCCAAAAAGAATAAATCTGTTGCACCAACGGAAGAGGATTTGAAGGCAGAATCATTTGAGCAGATTTTTAGCTAAGCATCAATTGTCATGGGAACACCCCGAGAACTTAAATGATTGAGGATTGCTTAACTGACATTTTCCCAGTCTCCCAGCTGCTGGTCAGTTTTGCTCATTCAACCCCTCGTGAGTTCTATATTACAGCGTTGTTTATGCTGTCCCCTTGATATGGATGACATATGACATTTGGAGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACCCCCAGGTTAATTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGATAATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCCCCGGGATACCTTTAAAGGGTAAAAGCTACTGCTGGTGGTGTTTTCAGTCCGTAAAAAAAAAATCAAACAATAAAGGG] [-] EMBL CB682418 [CCATGCCGAAGCACAGCGTTTTTGTGGGTAATCTGACGCGGAGAGTGAGATCTCGCCATCTTTGTGAATTATTTGCATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTCCCATATCTACCTTCAATGGCCCGAAATTGATGGGAAGATCCATTAACGTGATGTTCAAAGATGACAATGCCAAAAAGAATAAATCTGTTGCACCAACGGAAGAGGATTTGAAGGCAGAATCATTTGAGCAGATTTTTAGCTAAGCATCAATTGTCATGGGAACACCCCGAGAACTTAAATGATTGAGGATTGCTTAACTGACATTTTCCCAGTCTCCCAGCTGCTGGTCAGTTTTGCTCATTCAACCCCTCGTGAGTTCTATATTACAGCGTTGTTTATGCTGTCCCCTTGATATGGATGACATATGACATTTGGAGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACCCCCAGGTTAATTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGATAATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCCCCGGGATACCTTTAAAGGGTAAAAGCTACTGCTGGTGGTGTTTTCAGTCCGTAAAAAAAAAATCAAACAATAAAGGG] [-] EMBL CB681281 [ ATCAACCCCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGTTATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATTTACCTTCAATGGCACGAAATTGATGGGAAGATCCATTAACGTGATGTTCAAAGATGACAATGCCAAAAAGAATAAATTTGCTGCCCCAACGGAAGAGGATTTGAAGGCAGAATCATTTGAGCAGATTGTTAGCTAAGCATCAATTGTCATGGGAACCCCCCGAGAACTTAAATGATTGAGGATTGCTTAACTGACATTTTCCCAGTCTCCCAGCTGCTGGTCAGTTTTGCTCATTCAACGCCTCGTGAGTTTTATATTACAGCGTTGTTTATGCTGTCCCCTTGATATGGATGACATATGACATTTGGAGGTCAGCTTTATGCCATGAGCCCAAAATATATGTAAGCTTTTCTTGACCCCCAGGTTAATTAATTGTAGATAGAGATAAGTCTCAAGGATTTCAGCCGTAACCCGATGGATTTAGCGATAATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCCCCGGGATAACTTTAAAGGCTAAAAGCTACTTTTAG GGTGTTT ] consensusID : consensus_12961#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [ATACATTACTGTCACTTTGATTGTTGATATGATGGGAATGTTGAGTTATAGTTTGGGCGTCGTTGACTTAACTATGGGTTGTGTGTTCCTCCTGAAGATACTGAATTATTGGCCACCACTCTCTGCTAATGGTGAAAGATTCTTTTTCTCACAAGGTCTCCCAGCTGCTGGTCAGTTTTGCTCATTCAACGCCTCGTGAGTTCTATATTACAGCGTTGTTTATGCTGTCCACTTGATATGGATGACATATGACATTTGGAGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACACCCAGGTTAATTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGATAATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCACCGGGATAACTTTAAAGGCTAAAAA] [+] EMBL AU163725 [ATACATTACTGTCACTTTGATTGTTGATATGATGGGAATGTTGAGTTATAGTTTGGGCGTCGTTGACTTAACTATGGGTTGTGTGTTCCTCCTGAAGATACTGAATTATTGGCCACCACTCTCTGCTAATGGTGAAAGATTCTTTTTCTCACAAGGTCTCCCAGCTGCTGGTCAGTTTTGCTCATTCAACGCCTCGTGAGTTCTATATTACAGCGTTGTTTATGCTGTCCACTTGATATGGATGACATATGACATTTGGAGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACACCCAGGTTAATTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGATAATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCACCGGGATAACTTTAAAGGCTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 GAGGGGCCGAGGACGCGGCTCATCGCGCAGAACATCCCCTGGGACTGCACGGCGGACGAC 60 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 ATGCGCGCGCTCTTCGGGAAGCACGGCTCTGTCGTCGATGTCGAGCTCTCGATGTACAAT 120 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TCGACCAGAAACAGAGGATTGGCGTTTGTAACCATGGGTTCAGAAGAGGAGGCTCTTTCA 180 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 GCACTCAACCATCTAAATTCGACTACTCTAAATGATAGAACAATTAAGGTAGACTTTACT 240 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 --------------------------------------------------CAGCGTTTTT 10 consensus_12961#2 -------------------------------------CCATGCCGAAGCACAGCGTTTTT 23 consensus_12961#0 AGATCGAGAAAGAAGCAGTATGTTGTGCCATCAGCTCCCATGCCGAAGCACAGCGTTTTT 300 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 GTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACC 70 consensus_12961#2 GTGGGTAATCTGACGCGGAGAGTGAGATCTCGCCATCTTTGTGAATTATTTGCATCAACC 83 consensus_12961#0 GTGGGTAATCTGACGTGGAGAGTGAGATCTCGCCATCTTCGTGAATTATTTGCATCAACC 360 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 CCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGT 130 consensus_12961#2 CCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGT 143 consensus_12961#0 CCAGGTGTTCAATCAGTTGAAGTTGTCTTCCATACCACAAGTCCGAGGCGATCTGCTGGT 420 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 TATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATCTACCTTCAAT 190 consensus_12961#2 TATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTCCCATATCTACCTTCAAT 203 consensus_12961#0 TATGGATTTGTTTCCTTTTCCTCAAAAGAGGCAGCAGAGGCTGCCATATCTACCTTCAAT 480 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 GGCACGGTAAGTATTCTGAAATGTAGCTTAGAAATAAAATATAGTACAAGTNTTGGTTTG 250 consensus_12961#2 GGCCCG------------------------------------------------------ 209 consensus_12961#0 GGCACG------------------------------------------------------ 486 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 TGTACGGCCCAAATNCTAATACATGATTGTGTNTTGATGCTATNTCTGACCTATGAAATA 310 consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 ------------------------------------------------------------ consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 TATCACAGAAATNGATGGGAAGATCCATNAACGTGATGTNCAAAGATGACAATGCCAAAA 370 consensus_12961#2 --------AAATTGATGGGAAGATCCATTAACGTGATGTTCAAAGATGACAATGCCAAAA 261 consensus_12961#0 --------AAATTGATGGGAAGATCCATTAACGTGATGTTCAAAGATGACAATGCCAAAA 538 consensus_12961#3 ----------------------ATACATTACTGTCACTTTGATTGTTGATA-TGATGGGA 37 ** *** * ** * * * * *** * ** * consensus_12961#1 AGAATAAATCTGCTGCACCAACGGAAGAGGATCTGAAGGCAGAATCATCTGAGCAGATNG 430 consensus_12961#2 AGAATAAATCTGTTGCACCAACGGAAGAGGATTTGAAGGCAGAATCATTTGAGCAGATTT 321 consensus_12961#0 AGAATAAATCTGCTGCACCAACGGAAGAGGATCTGAAGGCAGAATCATCTGAGCAGATTG 598 consensus_12961#3 ATGTTGAGT-TATAGTTTGGGCGTC-GTTGACTTAACTATGGG-TTGTGTGTTCCTCCTG 94 * * * * * * ** * ** * * * * * ** * consensus_12961#1 TNNAGCTAGCATCAATGGTCATGGGAACACACCGAGAACTNANATGATNGAGGATNNGCT 490 consensus_12961#2 TTAGCTAAGCATCAATTGTCATGGGAACACCCCGAGAACTTAAATGATTGAGGATTGCTT 381 consensus_12961#0 TTAGCTAAGCATCAATTGTCATGGGAACACACCGAGAACTTAAATGATTGAGGATTGCTT 658 consensus_12961#3 AAGATACTGAATTATTGGCCAC-----CACTCTCTG----CTAATGGTGAAAGATTCTTT 145 * ** * * * ** *** * * *** * * *** * consensus_12961#1 NACTGACATTNTTCCAGTCTCCCAGCTGCTGGTCAGTNNTGCTCATTCA-CGCCTCGTGA 549 consensus_12961#2 AACTGACATTTTCCCAGTCTCCCAGCTGCTGGTCAGTTTTGCTCATTCAACCCCTCGTGA 441 consensus_12961#0 AACTGACATTTTCCCAGTCTCCCAGCTGCTGGTCAGTTTTGCTCATTCAACGCCTCGTGA 718 consensus_12961#3 TTCTCACAA------GGTCTCCCAGCTGCTGGTCAGTTTTGCTCATTCAACGCCTCGTGA 199 ** *** ********************* ********** * ******** consensus_12961#1 GTTCTATATTACAGCGTTNGTNATGCTGNTCACT-GATATGGATGACNTATGACATN-GG 607 consensus_12961#2 GTTCTATATTACAGCGTTGTTTATGCTGTCCCCTTGATATGGATGACATATGACATTTGG 501 consensus_12961#0 GTTCTATATTACAGCGTTGTTTATGCTGTCCACTTGATATGGATGACATATGACATTTGG 778 consensus_12961#3 GTTCTATATTACAGCGTTGTTTATGCTGTCCACTTGATATGGATGACATATGACATTTGG 259 ****************** * ****** * ** ************ ******** ** consensus_12961#1 AGGTC-GCNTNATGC-ATGAGCACAAA-TATATGTAGCCTTCT----GACCCCAGNTNAN 660 consensus_12961#2 AGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACCCCCAGGTTAA 561 consensus_12961#0 AGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACACCCAGGTTAA 838 consensus_12961#3 AGGTCAGCTTTATGCCATGAGCACAAAATATATGTAAGCTTTTCTTGACACCCAGGTTAA 319 ***** ** * **** *********** ******** *** * ***** * * consensus_12961#1 NTATGTNAAGAGAATAGCTCAGATCAGCG-TACGAGATACANTGTANTGACATCGGCGAN 719 consensus_12961#2 TTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGAT 621 consensus_12961#0 TTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGAT 898 consensus_12961#3 TTAATTGTAGATAGAGATAAGTCTCAAGGATCTCAGCCGTAACCCGATGGATTTAGCGAT 379 ** * *** * *** * * ** * ** * **** consensus_12961#1 -----GTTAAGTCGGNATCNTANGGCTAGC------------------------------ 744 consensus_12961#2 AATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCCCCGGGATACCTTTAAAGG 681 consensus_12961#0 AATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCACCGGGATAACTTTAAAGG 958 consensus_12961#3 AATTTGTTTATTGTGAAATATTTGGCTGAAATGTATAAATCACCGGGATAACTTTAAAGG 439 *** * * * * * **** consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 GTAAAAGCTACTGCTGGTGGTGTTTTCAGTCCGTAAAAAAAAAATCAAACAATAAAGGG- 740 consensus_12961#0 CTAAAAGCTACTACTGGTATTGTTTTCAGTCTGTACTTGTCTTCGTTTTTATGTGACCGG 1018 consensus_12961#3 CTAAAAA----------------------------------------------------- 446 consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 AAGATTGTAGAGGCCGGGTTTAATCTAATCCATTATCTAAAATAAATGTGACCGGAAGAA 1078 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 CTGTGACAACTGTCAAATTAATATATAGCCTTCACATCAGTTCCAAATTGCACGCTTGGT 1138 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 GTGCTATCCTTAAAGGTTGCCGTGCAGTACAGACCCAAGGTTCTTCAGTAACCAAACGGG 1198 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 CTAGTACATCTGCGTCACGAGCGGTCCGACGAAACATCTGTGAGCAATACTGAACTGTGC 1258 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TGAATCAATTATTGTCCAGTCTTCCGTCCCCATCTGTCTATTCTTAGCTCAGAAAGTATC 1318 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 CTCTTTAATAATCTGATAATCTTGTAGTACTAAGCTTGTTGATTGTGAATGTGCTGCAGA 1378 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TATTTAGGTCCATTCTTTTTTTAGTGGATTTATGTTGGTTCTAAAGATACGCTGAACCTC 1438 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 CCTCTTAACCTGGACCTAGTCCTAAGAGCAAAGTTAATAGTATAGCCAACTACTAGCTAC 1498 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 AATTCATCTATAACTAATCTAATAGTTAATTCATACAATAGTTGCTTACTATACTATTAG 1558 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TATATAGTCCCACTGTCATATACACATTATGTCTTGGAGTCCGTGCTGCAGCGGGCTACA 1618 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 GAAGCTGTTCTTCTCTCTCATCTTTTATCTTATTAAAATATGTTTGTAGCTGGCTAATAG 1678 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TATGCTATTGTACCTGCTCTAAGAGCACCCGCAATGGTAAAGTAAGGTGCTCTCTATAAA 1738 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 ACATGTATATCTCAGTAATAGATTAGATTAATAGTAAACCACCTCAATAGTATTTCTACA 1798 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TGGGTATCTATAGCTCTCTCATCCATTGTCTTGTTTTTCTCTATAGACTCTCCAGGTTAG 1858 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TAGATAGCTTTACTCTCTCTCTCCATTTAATCTCTTACAAGTAGGAAAATACGATTATCT 1918 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TTTATAGAGAGCATATAGATAACCATTGCGGGTGCTCTAATAACACTAGCTAAGCGCAAA 1978 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 CTCCGAGTTATCCATTTCGCAGCATTTACCTTGACGGAGTGGACCTGAAACGCTAAACGC 2038 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 ATGAGCAAACGTGTACGGAACTCCTTTGGTCAATCGTTGGATTATCCATCTGAAACTCCT 2098 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TTTGTTTTCGCCGGGATACCCGTATGAAACTCCTGCATCCGTCGCCTTCATTCGCACCGG 2158 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TGATACCGTACTCATTTGGCCGGCAGACCAAACATAGTGGATTAGTGGACACTTATGTGT 2218 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 TGAGAATACCGTGCCGGTCCTTTGCGAAAGCACATGTAACGCCTAGGAAAGCAAGGAGCA 2278 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 GAAGCAATCTGCTTGTCTTGTGTGCGACAACGAGGCCAGTGCGTTGTCCTCGCACCAAGC 2338 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 GACCGCCTCGCCGCCGATTGTTCCGTGCGACGCCACACCGAAACCGAACCGGGACAACCT 2398 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 ATTTAATCTTTCAACAAATTTAAACCTTCAAATCTTGAAAAGTTTTCAACCAATGGATGC 2458 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 AATTCATTTTAAATAAAATAATTAAAAAGCATATCAAAAATAATAAATCTAGATATAAAA 2518 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 AGAGTTGTATAATCTAATTCCACTATACTTACGTAGATAAAACACTGTTTTACGTAAAAC 2578 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 GATATGGCATTAATGTATAATTAATAGAGTTTTAATTATCATAACCTTAAAAATTTATTT 2638 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 ATAGCAACTTTCATATAAAAAGTTTTTTAATGAAATATACCGTTTAGCAGTTTGAAAAAC 2698 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 ACGTGATTATCTAAATTTTTATCCAATTTTTATTACATAAAAAAGACCTAAATTTACAAG 2758 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 AATATTCTCTCTCTCCGTCCCATAATATAAGTTATTTTGGAGAGATATTTATTTTGGAGA 2818 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 ------------------------------------------------------------ consensus_12961#2 ------------------------------------------------------------ consensus_12961#0 GATATGACACAATCTAATACTACCAATCTAGAGTACCAGATTATTATGATACATTCCTTT 2878 consensus_12961#3 ------------------------------------------------------------ consensus_12961#1 --------------------------- consensus_12961#2 --------------------------- consensus_12961#0 AAAATTAATTATATTTTGATATAAAAT 2905 consensus_12961#3 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||