These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1463 fasta sequence [CTCTCTTCCACCTCCAGCCTTCCCTCCTCCTGCTGCTCCTCCACTGCAGCAAAAAGCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC-AGGG-GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGGTTTCTGTGGGCTACTTCATCGCTGACCTTGCAATGATCTTCTGGTTGTATCCTTCCCTTGGTGGAATGGAATACATCGTCCATCATACTCTTTCTCTAGTTGCAATAGCTTACACAATGTTGT-CA-GGGGAGGGTCAGTTCTACACATACATGGTTCTTATTTCAGAAACAACCACCCCTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA-AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAGTATTTGTGACAA--AAAAAATATTTACCTGTTCTCGCTCAACTCCTGTAGGAAAAGACATGTAAAAACGGTAGCATATCTCGTTGCTGATGTTTGAATTCGCCAAAACACGTCCTATGAA] [+] EMBL CF278533 [CTCTCTTCCACCTCCAGCCTTCCCTCCTCCTGCTGCTCCTCCACTGCAGCAAAAAGCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGACGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC AGGGNGTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTTAGGGGCCTATCACATTCCGCAATTCAATCATCTC ] [+] EMBL AK061721 [ CCTCCACTGCAGCAAAAAGCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGAGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC AGGG GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGGTTTCTGTGGGCTACTTCATCGCTGACCTTGCAATGATCTTCTGGTTGTATCCTTCCCTTGGTGGAATGGAATACATCGTCCATCATACTCTTTCTCTAGTTGCAATAGCTTACACAATGTTGT CA GGGGAGGGTCAGTTCTACACATACATGGTTCTTATTTCAGAAACAACCACCCCTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAG ] [+] EMBL AK061309 [ AAAAAGCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC AGGG GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGGTTTCTGTGGGCTACTTCATCGCTGACCTTGCAATGATCTTCTGGTTGTATCCTTCCCTTGGTGGAATGGAATACATCGTCCATCATACTCTTTCTCTAGTTGCAATAGCTTACACAATGTTGT CA GGGGAGGGTCAGTTCTACACATACATGGTTCTTATTTCAGAAACAACCACCCCTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAG ] [+] EMBL AK102010 [ GCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC AGGG GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGGTTTCTGTGGGCTACTTCATCGCTGACCTTGCAATGATCTTCTGGTTGTATCCTTCCCTTGGTGGAATGGAATACATCGTCCATCATACTCTTTCTCTAGTTGCAATAGCTTACACAATGTTGT CA GGGGAGGGTCAGTTCTACACATACATGGTTCTTATTTCAGAAACAACCACCCCTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAGTATTTGTGACAA TTACAGTATTTACCTGTTCTCGCTCAACTCCTGTAGGAAAAGACATGTAAAAACGGTAGCATATCTCGTTGCTGATGTTTGAATTCGCCAAAACACGTCCTATGAA] [+] EMBL CF309310 [ GCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC A GG GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCA ] [+] EMBL AU162154 [ CTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGG GAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTNGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGANGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGANAGACTACTTGCTGGCTGATNCACTGGTTCCGTACACCTCGGTGCT ] [+] EMBL C91760 [ GGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGG GAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACAGCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACANAGATACAACGTGTTGAATGG ACAACAAGGG GTATGTCCAGTGCACATGCGATCTTTATCACAG TATATCAGTATANCTGGT AAGGCTACAGATCTTTTCTCTGATCGCCTTA ] [+] EMBL AU162155 [ ttTTGTCCAGGGGGTGGGTCAGTTCTACCCATACATGGTCCTTATTNCAGAAACACCNACCCTTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGNTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACNTCAAATGCTATAGTATTTGTGACAA AAA ] [-] EMBL CF309311 [ TTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAATGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAGTATTTGTGACAATTAAAAAAaaaaaa ] [+] EMBL AU029771 [ CAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGATAAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAGTATTTGTGACAA AAAAAA ] [-] EMBL CF278534 [ TGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATTGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAAAGCTATAGTATTTGTGAAAA AAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||