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Oryza sativa
cluster # 12966 cluster # 12966       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12966#0 length = 1734 sequences # 8  
consensus_12966#1 length = 793 sequences # 1  
consensus_12966#2 length = 466 sequences # 1  
consensus_12966#3 length = 332 sequences # 1  

consensusID : consensus_12966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1734
fasta sequence
                              [ACCGCCGCTACTCCTGAGAGATCGAGACGTCGCCTCCTTCTCCGTCCACCGTCTCTCGTCTCCACCTCCCCAATCCCACCACCGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCTCCCCCCCTCCCCA-TCTCCAAAGCCGACGCATCTACTTCCAATCTGATTCTCCACCGCTGAGGAGAGGTAAGAGTGGGGCGTCGATGAGGCGGATGAAGGAGCGGAAGGCCCCGTGAGTTGGGGTCTTGCCGGCGGAATATTCCATGAGTTATCGGCGTGGGATGATTAATCCAATAATTAGATGGGGTGTGAGAATAACCTTTTCTAATTATAGTTGTGTTGATCAACTCCTTGACAAATGATGTTTGGTGACCTTTTAATCACATATATCATTTTAAGTTTTAGTCCTGACTCTTGGAGTGCTGGAAGTAAAAATTATGCATGGATCTCTTATGAGAGTTTGGATATAGAATCTCTTTGTGATTTCCAGTGTTAAATCTGGGATTCCACTGGCCAATAGAGGAACTGCTTCCATCGTTTCGTCATCTCTAATCTACAGAGGCACTTATCACCATCCCCTGCTACTGCTCTCTTATTAAGCAACTTAGTTTTACTCTTCCTCTAATTATCTTAGATTGATTATTTGGTACAAACTTTCAGACTGCATAATCGTGTCCATTTTATCCAGGCTGCTATGATTTCCAACCGGTTTAGAACATTCCAGAATTACCTAATTTTACTCTTAAGCGATAAAAAAGAGAATGCTCAGTGTTAACAAAAAAAAGGATTGTAAAGCAGTTTCAATAGATCGAACTTACAATTTTTCATCCAACATTTGTAAGTTTGTTGTACGTAGTACCATAATAATTGAGGTTATACAGATATACTGAATGTGTAGAGCCAGTTGCATTATATAGAATTTTCTTCCTCTCAATAGTCATATCTTTAGATAGGATTCTTCTGAACAAAGAAAGGTGTAGTTCATAATGTGATCTAGATTCTATTAAGAAATAATTAATCATGTTGAATTCAAGTTGTGGCATGTTAATTGCTTCTGCATGTTTTCACTAGCTATAGTATATCACA-GGGTTTACT-GCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGAACTATGCATATGGGGCTTAAAGAAAGATATTATGATTCTCTTAATACCATTGGATGACCTTTCTTTGGTCATCCCGTCAAAAGATGGATTCAGAGCAGTGAGAGAATTTTCTGTAGCTAGAGATGCTAATATTAACTTGAGCAGTCTGGCAAACGCTTTCCTAATTTCCCGCCAACAGATTTTGTGCACTCTTGGCTAAATCGCATTGAAATTCTTGGCCCGTATATATTCTAACAGAAAACGTTTTCTCCCTCAGTCTTTGTGATGCATTGAATTGAACAGGAACTGAGAAGTAATCCAGGTTGTAGCTTCTTCAGGCCACCTTTCAATAACTGAACTTGAAATAGAGCTGAGAAGGTCATCAAATTTTTCTTTATATTTGGCATTATCATGGATCAATACTCAAAGGGAGAGAGCATATTTCACTTACTTTCCATTGTTAACTCCTTTTCCGCTCCATCGAACAAATATTGTTGTTATTTCAGTGTCTTTCCAATCCAAATTATTCTCTCCACACACGTTA]

[+] EMBL AK068470             [ACCGCCGCTACTCCTGAGAGATCGAGACGTCGCCTCCTTCTCCGTCCACCGTCTCTCGTCTCCACCTCCCCAATCCCACCACCGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCTCCCCCCCTCCCCA TCTCCAAAGCCGACGCATCTACTTCCAATCTGATTCTCCACCGCTGGGGAGAGGTAAGAGTGGGGCGTCGATGAGGCGGATGAAGGAGCGGAAGGCCCCGTGAGTTGGGGTCTTGCCGGCGGAATATTCCATGAGTTATCGGCGTGGGATGATTAATCCAATAATTAGATGGGGTGTGAGAATAACCTTTTCTAATTATAGTTGTGTTGATCAACTCCTTGACAAATGATGTTTGGTGACCTTTTAATCACATATATCATTTTAAGTTTTAGTCCTGACTCTTGGAGTGCTGGAAGTAAAAATTATGCATGGATCTCTTATGAGAGTTTGGATATAGAATCTCTTTGTGATTTCCAGTGTTAAATCTGGGATTCCACTGGCCAATAGAGGAACTGCTTCCATCGTTTCGTCATCTCTAATCTACAGAGGCACTTATCACCATCCCCTGCTACTGCTCTCTTATTAAGCAACTTAGTTTTACTCTTCCTCTAATTATCTTAGATTGATTATTTGGTACAAACTTTCAGACTGCATAATCGTGTCCATTTTATCCAGGCTGCTATGATTTCCAACCGGTTTAGAACATTCCAGAATTACCTAATTTTACTCTTAAGCGATAAAAAAGAGAATGCTCAGTGTTAACAAAAAAAAGGATTGTAAAGCAGTTTCAATAGATCGAACTTACAATTTTTCATCCAACATTTGTAAGTTTGTTGTACGTAGTACCATAATAATTGAGGTTATACAGATATACTGAATGTGTAGAGCCAGTTGCATTATATAGAATTTTCTTCCTCTCAATAGTCATATCTTTAGATAGGATTCTTCTGAACAAAGAAAGGTGTAGTTCATAATGTGATCTAGATTCTATTAAGAAATAATTAATCATGTTGAATTCAAGTTGTGGCATGTTAATTGCTTCTGCATGTTTTCACTAGCTATAGTATATCACA GGGTTTACT GCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCGTAGTACTGAAAGGTGAACTATGCATATGGGGCTTAAAGAAAGATATTATGATTCTCTTAATACCATTGGATGACCTTTCTTTGGTCATCCCGTCAAAAGATGGATTCAGAGCAGTGAGAGAATTTTCTGTAGCTAGAGATGCTAATATTAACTTGAGCAGTCTGGCAAACGCTTTCCTAATTTCCCGCCAACAGATTTTGTGCACTCTTGGCTAAATCGCATTGAAATTCTTGGCCCGTATATATTCTAACAGAAAACGTTTTCTCCCTCAGTCTTTGTGATGCATTGAATTGAACAGGAACTGAGAAGTAATCCAGGTTGTAGCTTCTTCAGGCCACCTTTCAATAACTGAACTTGAAATAGAGCTGAGAAGGTCATCAAATTTTTCTTTATATTTGGCATTATCATGGATCAATACTCAAAGGGAGAGAGCATATTTCACTTACTTTCCATTGTTAACTCCTTTTCCGCTCCATCGAACAAATATTGTTGTTATTTCAGTGTC                                  ]
[+] EMBL CB672769             [            CCTGACATATCGAGACGTCGCCTCCTTCTCCGTCCACCGTCTCTCGTCTCCACCTCCCCAATCCCACCACCGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCCCCCCCCCTCGCCATTCTCCAAAGCCGACGCATCTACTTCCAGTCTGATTCTCCACCGCTGAGGAGAGGT ATAGTGGGGAGTCTATGAGGCGGATGAATGAGCGGAAGGCCCCGTGAGTAGGGGTCTTGCCGGGGGAATATTACATGAGGAATCGGCGTGGGATGATGAATCCAATAATTAGATGGGGTGTGAGAATAAACTTTTCTAATTATGGTTGgga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB672767             [            CCTGAGAGATCGAGACGTCGCCTCCTTCTCCGTCCACCGTCTCTCGTCTCCACCTCCCCAATCCCACCACCGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCCCCCCCCCTCCCCA TCTCCAAAGCCGACGCATCTACTTCCAATCTGATTCTCCACCGCTGAGGAGAGGTAAGAGTGGGGCGTCTATGAGGCGGATGAAGGAGCGGAAGGCCCCGTGAGTAGGGGTCTTGCCGGCGGAATATTCCATGAGGAATCGGCGTGGGATGATTAATCCAATAATTAGATGGGGTGTGAGAATAACCTTTTCTAATTATAGTTGTGTTGATCAACTCCTTGACAAATGATGTTAGGTGACCTTTTAATCACATATATCATTTTAAGTTTTAGTCCTGACTCTTGGAGTGCTGGAAGTAAAAATTATGCATGGATCTCTTATGAGAGCTTGGATATAGAATCTCTTAGTGATTTCCAGTGTTAAATCTGGGATTCCACTGGCCAAGAGAGGAACTGCTTCCATCGTATCGTCATCTCTAATCTACAGAGGCACTTATCACCATCCCCTGCTACTGCTCTCATATGAAGCAACTTAGATTTACTCTTCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB675374             [                        AGACGTCGCCTCCTTCTCCGTCCACCGTCTCTCGTCTCCACCTCCCCAATCCCACCACCGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCTCCCCCCCTCCCCA TCTCCAAAGCCGACGCATCTACTTCCAATCTGATTCTCCACCGCTGAGGAGAGGTAAGAGTGGGGCGTCGATGAGGCGGATGAAGGAGCGGAAGGCCCCGTGAGTTGGGGTCTTGCCGGCGGAATATTCCATGAGTTATCGGCGTGGGATGATTAATCCAATAATTAGATGGGGTGTGAGAATAACCTTTTCTAATTATAGTTGTGTTGATCAACTCCTTGACAAATGATGTTTGGTGACCTTTTAATCACATATATCATTTTAAGTTTTAGTCCTGACTCTTGGAGTGCTGGAAGTAAAAATTATGCATGGATCTCTTATGAGAGTTTGGATATAGAATCTCTTTGTGATTTCCAGTGTTAAATCTGGGATTCCACTGGCCAATAGAGGAACTGCTTCCATCGTTTCGTCATCTCTAATCTACAGAGGCACTTATCACCATCCCCTGCTACTGCTCTCTTATTAAGCAACTTAGTTTTACTCTTCCTCTAATTATCTTAGATTGATTATTTGGTACAAACTTTCAGACTGCATAATCGTGTCCATTTTATCCAGGCTGCTATGATTTCCAACCGGTTTAGAACATTCCAGAATTACCTAATTTTACTCTTAAGCGATAAAAAAGAGAATGCTCAGTGTTAACAAAAAAAAGGATTGTAAAGCAGTTTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF323126             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGCTACTGCTCTCTTATTAAGCAACTTAGTTTTACTCTTCCTCTAATTATCTTAGATTGATTATTTGGTACAAACTTTCAGACTGCATAATCGTGTCCATTTTATCCAGGCTGCTATGATTTCCAACCGGTTTAGAACATTCCAGAATTACCTAATTTTACTCTTAAGCGATAAAAAAGAGAATGCTCAGTGTTAACAAAAAAAAGGATTGTAAAGCAGTTTCAATAGATCGAACTTACAATTTTTCATCCAACATTTGTAAGTTTGTTGTACGTAGTACCATAATAATTGAGGTTATACAGATATACTGAATGTGTAGAGCCAGTTGCATTATATAGAATTTTCTTCCTCTCAATAGTCATATCTTTAGATAGGATTCTTCTGAACAAAGAAAGGTGTAGTTCATAATGTGATCTAGATTCTATTAAGAAATAATTAATCATGTTGAATTCAAGTTGTGGCATGTTAATTGCTTCTGCATGTTTTCACTAGCTATAGTATATCACAGGGGTTTACTGGCTTCTTATAAAAGGATGATGAAGACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB672770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGTACGTAGTACCATAATAATTGAGGTTATACAGATATACTGAATGTGTAGAGCCAGTTGCATTATATAGAATTTTCTTCCTCTCAATAGTCATATCTTTAGATAGGATTCTTCTGAACAAAGAAAGGTGTAGTTCATAATGTGATCTAGATTCTATTAAGAAATAATTAATCATGTTGAATTCAAGTTGTGGCATGTTAATTGCTTCTGCATGTTTTCACTAGCTATAGTATATCACA GGGTTTACT GCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGAACTATGCATATGGGGCTTAAAGAAAGATATTATGATTCTCTTAATACCATTGGATGACCTTTCTTTGGTCATCCCGTCAAAAGATGGATTCAGAGCAGTGAGAGAATTTTCTGTAGCTAGAGATGCTAATATTAACTTGAGCAGTCTGGCAAACGCTTTCCTAATTTCCCGCCAACAGATTTTGTGCACTCTTGGCTAAATCGCATTGAAATTCTTGGCCCGTATATATTCTAACAGAAAACGTTTTCTCCCTCAGTCTTTGTGATGCATTGAATTGAACAGGAACTGAGAAGTAATCCAGGTTGTAGCTTCTTCAGGCCACCTTTCAATAACTGAACTTGAAATAGAGCTGAGAAGGTCATCAAATTTTTCTTTATATTTGGCATTATCATGGATCAATACTCAAAGGGAGAGAGCATATTTCACTTACTTTCCATTGTAAAaaaaaaga                                                                        ]
[-] EMBL CB659721             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCTTCTGAACAAAGAAAGGTGTAGTTCATAATGTGATCTAGATTCTATTAAGAAATAATTAATCATGTTGAATTCAAGTTGTGGCATGTTAATTGCTTCTGCATGTTTTCACTAGCTATAGTATATCACA GGGTTTACT GCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGAACTATGCATATGGGGCTTAAAGAAAGATATTATGATTCTCTTAATACCATTGGATGACCTTTCTTTGGTCATCCCGTCAAAAGATGGATTCAGAGCAGTGAGAGAATTTTCTGTAGCTAGAGATGCTAATATTAACTTGAGCAGTCTGGCAAACGCTTTCCTAATTTCCCGCCAACAGATTTTGTGCACTCTTGGCTAAATCGCATTGAAATTCTTGGCCCGTATATATTCTAACAGAAAACGTTTTCTCCCTCAGTCTTTGTGATGCATTGAATTGAACAGGAACTGAGAAGTAATCCAGGTTGTAGCTTCTTCAGGCCACCTTTCAATAACTGAACTTGAAATAGAGCTGAGAAGGTCATCAAATTTTTCTTTATATTTGGCATTATCATGGATCAATACTCAAAGGGAGAGAGCATATTTCACTTACTTTCCATTGTTAACTCCTTTTCCGCTCCATCGAACAAATATTGTTGTTATTTCAGTGTCTTTCCAATCCAAATTATTCTCTCCACAC      ]
[+] EMBL CA765506             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAGATATTATGATTCTCTTAATACCATTGGATGACCTTTCTTTGGTCATCCCGTCAAAAGATGGATTCAGAGCAGTGAGAGAATTTTCTGTAGCTAGAGATGCTAATATTAACTTCAGCAGTCTGGCAAACGCTTTCCTAATTTCCCGCCAACAGATTTTGTGCACTCTTGGCTAAATCGCATTGAAATTCTTGGCCCGTATATATTCTAACAGAAAACGTTTTCTCCCTCAGTCTTTGTGATGCATTGAATTGAACAGGAACTGAGAAGTAATCCAGGTTGTAGCTTCTTCAGGCCACCTTTCAATAACTGAACTTGAAATAGAGCTGAGAAGGTCATCAAATTTTTCTTTATATTTGGCATTATCATGGATCAATACTCAAAGGGAGAGAGCATATTTCACTTACTTTCCATTGTTAACTCCTTTTCCGCTCCATCGAACAAATATTGTTGTTATTTCAGTGTCTTTCCAATCCAAATTATTCTCTCCACATACGTTA]


>consensus_12966#0 ACCGCCGCTACTCCTGAGAGATCGAGACGTCGCCTCCTTCTCCGTCCACCGTCTCTCGTC TCCACCTCCCCAATCCCACCACCGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCT CCCCCCCTCCCCATCTCCAAAGCCGACGCATCTACTTCCAATCTGATTCTCCACCGCTGA GGAGAGGTAAGAGTGGGGCGTCGATGAGGCGGATGAAGGAGCGGAAGGCCCCGTGAGTTG GGGTCTTGCCGGCGGAATATTCCATGAGTTATCGGCGTGGGATGATTAATCCAATAATTA GATGGGGTGTGAGAATAACCTTTTCTAATTATAGTTGTGTTGATCAACTCCTTGACAAAT GATGTTTGGTGACCTTTTAATCACATATATCATTTTAAGTTTTAGTCCTGACTCTTGGAG TGCTGGAAGTAAAAATTATGCATGGATCTCTTATGAGAGTTTGGATATAGAATCTCTTTG TGATTTCCAGTGTTAAATCTGGGATTCCACTGGCCAATAGAGGAACTGCTTCCATCGTTT CGTCATCTCTAATCTACAGAGGCACTTATCACCATCCCCTGCTACTGCTCTCTTATTAAG CAACTTAGTTTTACTCTTCCTCTAATTATCTTAGATTGATTATTTGGTACAAACTTTCAG ACTGCATAATCGTGTCCATTTTATCCAGGCTGCTATGATTTCCAACCGGTTTAGAACATT CCAGAATTACCTAATTTTACTCTTAAGCGATAAAAAAGAGAATGCTCAGTGTTAACAAAA AAAAGGATTGTAAAGCAGTTTCAATAGATCGAACTTACAATTTTTCATCCAACATTTGTA AGTTTGTTGTACGTAGTACCATAATAATTGAGGTTATACAGATATACTGAATGTGTAGAG CCAGTTGCATTATATAGAATTTTCTTCCTCTCAATAGTCATATCTTTAGATAGGATTCTT CTGAACAAAGAAAGGTGTAGTTCATAATGTGATCTAGATTCTATTAAGAAATAATTAATC ATGTTGAATTCAAGTTGTGGCATGTTAATTGCTTCTGCATGTTTTCACTAGCTATAGTAT ATCACAGGGTTTACTGCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTT GAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCATAGTA CTGAAAGGTGAACTATGCATATGGGGCTTAAAGAAAGATATTATGATTCTCTTAATACCA TTGGATGACCTTTCTTTGGTCATCCCGTCAAAAGATGGATTCAGAGCAGTGAGAGAATTT TCTGTAGCTAGAGATGCTAATATTAACTTGAGCAGTCTGGCAAACGCTTTCCTAATTTCC CGCCAACAGATTTTGTGCACTCTTGGCTAAATCGCATTGAAATTCTTGGCCCGTATATAT TCTAACAGAAAACGTTTTCTCCCTCAGTCTTTGTGATGCATTGAATTGAACAGGAACTGA GAAGTAATCCAGGTTGTAGCTTCTTCAGGCCACCTTTCAATAACTGAACTTGAAATAGAG CTGAGAAGGTCATCAAATTTTTCTTTATATTTGGCATTATCATGGATCAATACTCAAAGG GAGAGAGCATATTTCACTTACTTTCCATTGTTAACTCCTTTTCCGCTCCATCGAACAAAT ATTGTTGTTATTTCAGTGTCTTTCCAATCCAAATTATTCTCTCCACACACGTTA



consensusID : consensus_12966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence
                              [GAGGTTATACAGATATACTGAATGTGTAGAGCCAGTTGCATTATATAGAATTTTCTTCCTCTCAATAGTCATATCTTTAGATAGGATTCTTCTGAACAAAGAAAGGTGTAGTTCATAATGTGATCTAGATTCTATTAAGAAATAATTAATCATGTTGAATTCAAGTTGTGGCATGTTAATTGCTTCTGCATGTTTTCACTAGCTATAGTATATCACAGGGTTTACTGCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGAACTATGCATATGGGGCTTAAAGAAAGATATTATGATTCTCTTAATACCATTGGATGACCTTTCTTTGGTCATCCCGTCAAAAGATGGATTCAGAGCAGTGAGAGAATTTTCTGTAGCTAGAGATGCTAATATTAACTTGAGCAGTCTGGCAAACGCTTTCCTAATTTCCCGCCAACAGATTTTGTGCACTCTTGGCTAAATCGCATTGAAATTCTTGGCCCGTATATATTCTAACAGAAAACGTTTTCTCCCTCAGTCTTTGTGATGCATTGAATTGAACAGGAACTGAGAAGTAATCCAGGTTGTAGCTTCTTCAGGCCACCTTTCAATAACTGAACGGGAAATAGAGCTGAGAAGGTCATCAAATTTTTCTTTATATTTGGCATTATCATGGATCAATACTCAAAAAGGGAGAGCATATTTCACTTACTTTCCATTGTTCCCATAAAGG]

[-] EMBL CB672768             [GAGGTTATACAGATATACTGAATGTGTAGAGCCAGTTGCATTATATAGAATTTTCTTCCTCTCAATAGTCATATCTTTAGATAGGATTCTTCTGAACAAAGAAAGGTGTAGTTCATAATGTGATCTAGATTCTATTAAGAAATAATTAATCATGTTGAATTCAAGTTGTGGCATGTTAATTGCTTCTGCATGTTTTCACTAGCTATAGTATATCACAGGGTTTACTGCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGAACTATGCATATGGGGCTTAAAGAAAGATATTATGATTCTCTTAATACCATTGGATGACCTTTCTTTGGTCATCCCGTCAAAAGATGGATTCAGAGCAGTGAGAGAATTTTCTGTAGCTAGAGATGCTAATATTAACTTGAGCAGTCTGGCAAACGCTTTCCTAATTTCCCGCCAACAGATTTTGTGCACTCTTGGCTAAATCGCATTGAAATTCTTGGCCCGTATATATTCTAACAGAAAACGTTTTCTCCCTCAGTCTTTGTGATGCATTGAATTGAACAGGAACTGAGAAGTAATCCAGGTTGTAGCTTCTTCAGGCCACCTTTCAATAACTGAACGGGAAATAGAGCTGAGAAGGTCATCAAATTTTTCTTTATATTTGGCATTATCATGGATCAATACTCAAAAAGGGAGAGCATATTTCACTTACTTTCCATTGTTCCCATAAAGG]


>consensus_12966#1 GAGGTTATACAGATATACTGAATGTGTAGAGCCAGTTGCATTATATAGAATTTTCTTCCT CTCAATAGTCATATCTTTAGATAGGATTCTTCTGAACAAAGAAAGGTGTAGTTCATAATG TGATCTAGATTCTATTAAGAAATAATTAATCATGTTGAATTCAAGTTGTGGCATGTTAAT TGCTTCTGCATGTTTTCACTAGCTATAGTATATCACAGGGTTTACTGCTTCTTATAAAAG GATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAA GTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGAACTATGCATATGGGGCTT AAAGAAAGATATTATGATTCTCTTAATACCATTGGATGACCTTTCTTTGGTCATCCCGTC AAAAGATGGATTCAGAGCAGTGAGAGAATTTTCTGTAGCTAGAGATGCTAATATTAACTT GAGCAGTCTGGCAAACGCTTTCCTAATTTCCCGCCAACAGATTTTGTGCACTCTTGGCTA AATCGCATTGAAATTCTTGGCCCGTATATATTCTAACAGAAAACGTTTTCTCCCTCAGTC TTTGTGATGCATTGAATTGAACAGGAACTGAGAAGTAATCCAGGTTGTAGCTTCTTCAGG CCACCTTTCAATAACTGAACGGGAAATAGAGCTGAGAAGGTCATCAAATTTTTCTTTATA TTTGGCATTATCATGGATCAATACTCAAAAAGGGAGAGCATATTTCACTTACTTTCCATT GTTCCCATAAAGG



consensusID : consensus_12966#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence
                              [CAGTCGCCGGCCTCGCTGCGCACCCCGCCCCTCCTGGTCACCGCGCCGCGCCGCCGAGCGCCCCCGAGGCTGGCCACCAACGCCGCTGGGTTGGTTTACTGCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGACCAAATGCTGCTGTAGTGTTGTATTTTACTACTATTACTTGCTTTTGACCAAATTTAAGTAATGAAAAATCTAGGACTAGTCGACGATTTACTCAAAGTTTATGATAGTATGCCCATCTTTGAATTTTATCTGCTGGTTAAAATAAGCTGCCATTAGCCAGAAGAGAGGGTGTTTCTTAGCCAATTTGACGCTATGTCGGCTGGTATAGCTGCTAATGTTGTTGAGTTAATTTTTCTGCACAAAAAAAAA]

[+] EMBL AU101402             [CAGTCGCCGGCCTCGCTGCGCACCCCGCCCCTCCTGGTCACCGCGCCGCGCCGCCGAGCGCCCCCGAGGCTGGCCACCAACGCCGCTGGGTTGGTTTACTGCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGACCAAATGCTGCTGTAGTGTTGTATTTTACTACTATTACTTGCTTTTGACCAAATTTAAGTAATGAAAAATCTAGGACTAGTCGACGATTTACTCAAAGTTTATGATAGTATGCCCATCTTTGAATTTTATCTGCTGGTTAAAATAAGCTGCCATTAGCCAGAAGAGAGGGTGTTTCTTAGCCAATTTGACGCTATGTCGGCTGGTATAGCTGCTAATGTTGTTGAGTTAATTTTTCTGCACAAAAAAAAA]


>consensus_12966#2 CAGTCGCCGGCCTCGCTGCGCACCCCGCCCCTCCTGGTCACCGCGCCGCGCCGCCGAGCG CCCCCGAGGCTGGCCACCAACGCCGCTGGGTTGGTTTACTGCTTCTTATAAAAGGATGAT GAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTT CACGGCTACAACAAATAGCATAGTACTGAAAGGTGACCAAATGCTGCTGTAGTGTTGTAT TTTACTACTATTACTTGCTTTTGACCAAATTTAAGTAATGAAAAATCTAGGACTAGTCGA CGATTTACTCAAAGTTTATGATAGTATGCCCATCTTTGAATTTTATCTGCTGGTTAAAAT AAGCTGCCATTAGCCAGAAGAGAGGGTGTTTCTTAGCCAATTTGACGCTATGTCGGCTGG TATAGCTGCTAATGTTGTTGAGTTAATTTTTCTGCACAAAAAAAAA



consensusID : consensus_12966#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence
                              [AGGCCGTCTCTCGTCTCCACCTCCCCAATCCCACCACCGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCTCCCCCCCTCCCCATCTCCAAAGCCGACGCATCTACTTCCAATCTGATTCTCCACCGCTGAGGAGAGGTAAGAGTGGGGCGTCGATGAGGCGGATGAAGGAGCGGAAGGCCCCGTGAGTTGGGGTCTTGCCGGCGGAATATTCCATGAGTTATCGGCGTGGGATGATTAATCCAATAATTAGATGGGTCCTGACTCTTGGAGTGCTGGAAGTAAAAATTATGCATGGATCTCTTATGAGAGCTTGGATATAGAATCTC]

[+] EMBL CA998290             [AGGCCGTCTCTCGTCTCCACCTCCCCAATCCCACCACCGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCTCCCCCCCTCCCCATCTCCAAAGCCGACGCATCTACTTCCAATCTGATTCTCCACCGCTGAGGAGAGGTAAGAGTGGGGCGTCGATGAGGCGGATGAAGGAGCGGAAGGCCCCGTGAGTTGGGGTCTTGCCGGCGGAATATTCCATGAGTTATCGGCGTGGGATGATTAATCCAATAATTAGATGGGTCCTGACTCTTGGAGTGCTGGAAGTAAAAATTATGCATGGATCTCTTATGAGAGCTTGGATATAGAATCTC]


>consensus_12966#3 AGGCCGTCTCTCGTCTCCACCTCCCCAATCCCACCACCGCTTCCTCCCCTCCCCTCCCGC TGTAGTCGAGCATCTCCCCCCCTCCCCATCTCCAAAGCCGACGCATCTACTTCCAATCTG ATTCTCCACCGCTGAGGAGAGGTAAGAGTGGGGCGTCGATGAGGCGGATGAAGGAGCGGA AGGCCCCGTGAGTTGGGGTCTTGCCGGCGGAATATTCCATGAGTTATCGGCGTGGGATGA TTAATCCAATAATTAGATGGGTCCTGACTCTTGGAGTGCTGGAAGTAAAAATTATGCATG GATCTCTTATGAGAGCTTGGATATAGAATCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12966#0      ------------------------------------------------------------
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      GAGGTTATACAGATATACTGAATGTGTAGAGCCAGTTGCATTATATAGAATTTTCTTCCT 60
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      ----------------------------------ACCGCCGCTACTCCTGAGAGATCGAG 26
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      CTCAATAGTCATATCTTTAGATAGGATTCTTCTGAACAAAGAAAGGTGTAGTTCATAATG 120
consensus_12966#2      ----------------------------------------------------------CA 2
                                                                                   

consensus_12966#0      ACGTCGCCTCCTTCTCCGTCCACCGTCTCTCGTCTCCACCTC----CCCAATCCCACCAC 82
consensus_12966#3      -------------------AGGCCGTCTCTCGTCTCCACCTC----CCCAATCCCACCAC 37
consensus_12966#1      TGATCTAGATTCTATTAAGAAATAATTAATCATGTTGAATTCAAGTTGTGGCATGTTAAT 180
consensus_12966#2      GTCGCCGGCCTCGCTGCGCACCCCGCCCCTCCTGGTCACCGC----GCCGCGCCGCCGAG 58
                                                    ** *    *   *                * 

consensus_12966#0      CGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCTCCCCCCCT-CCCCATCTCCAAA 141
consensus_12966#3      CGCTTCCTCCCCTCCCCTCCCGCTGTAGTCGAGCATCTCCCCCCCT-CCCCATCTCCAAA 96
consensus_12966#1      TGCTTCTGCATGTTTTCACTAGCTATAGTATATCACAGGGTTTACTGCTTCTTATAAAAG 240
consensus_12966#2      CGCCCCCGAGGCTGGCCACCAAC----GCCGCTGGGTTGGTTTACTGCTTCTTATAAAAG 114
                        **  *      *   * *   *    *                ** *  * * *  ** 

consensus_12966#0      GCCGACGCATCTACTT--CCAATCTGATTCTCCACCG-------CTGAGGAGAGGTAAGA 192
consensus_12966#3      GCCGACGCATCTACTT--CCAATCTGATTCTCCACCG-------CTGAGGAGAGGTAAGA 147
consensus_12966#1      GATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAA 300
consensus_12966#2      GATGATGAAGACACTGAACAAAATGGAGTTTGAAGTGAAGGATTCAGTGGTCTGGCAAAA 174
                       *  ** * *   ***   * **   ** * *  *  *       * * **   ** ** *

consensus_12966#0      GTGGGGCGTCGATGAGGCGGATGA---AGGAGCGGAAGGCC--CCGTGAGTTGGGGTCTT 247
consensus_12966#3      GTGGGGCGTCGATGAGGCGGATGA---AGGAGCGGAAGGCC--CCGTGAGTTGGGGTCTT 202
consensus_12966#1      GTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGAACTATGCATATGGGGCTT 360
consensus_12966#2      GTATTTCACGGCTACAACAAATAGCATAGTACTGAAAGGTGA-CCAAATGCTGCTGTAGT 233
                       **    *   * *    *  **     ** *  * ****    *           *   *

consensus_12966#0      GCCGGCGGA-ATATTCCATGAGTTATCGGCGTGGGATGA--TTAATCCAATAATTAGATG 304
consensus_12966#3      GCCGGCGGA-ATATTCCATGAGTTATCGGCGTGGGATGA--TTAATCCAATAATTAGATG 259
consensus_12966#1      AAAGAAAGATATTATGATTCTCTTAATACCATTGGATGACCTTTCTTTGGTCATCCCGTC 420
consensus_12966#2      GTTGT-----ATTTTACTACTATTACTTGCTTTTGACCAAATTTAAGTAATGAAAAATCT 288
                          *      **  *       ***    * *  **  *  **       * *       

consensus_12966#0      GGGTGTGAGAATAACCTTTTCTAATTATAGTTGTGTTGATCAACTCCTTGACAAATGATG 364
consensus_12966#3      GG---------------------------------------------------------- 261
consensus_12966#1      AAAAGATGGATTCAGAGCAGTGAGAGAATTTTCTGTAGCTAGAGATGCTAATATTAACTT 480
consensus_12966#2      AGGACTAGTCGACGATTTACTCAAAGTTTAT------GATAGTATGCCCATCTTTGAATT 342
                                                                                   

consensus_12966#0      TTTGGTGACCTTTTAATCACATATATCATTTTAAGTTTTAGTCCTG---ACTCTTGGAGT 421
consensus_12966#3      -----------------------------------------TCCTG---ACTCTTGGAGT 277
consensus_12966#1      GAGCAGTCTGGCAAACGCTTTCCTAATTTCCCGCCAACAGATTTTGTGCACTCTTGGCTA 540
consensus_12966#2      TTATCTGCTGGTTAAAATAAGCTGCCATTAGCCAGAAGAGAGGGTG---TTTCTTAGCCA 399
                                                                   **     **** *   

consensus_12966#0      GCTGGAAGTAAAAATTATG-CATGGATCTCTTATGAGAGTTTGGATATAGAATCTCTTTG 480
consensus_12966#3      GCTGGAAGTAAAAATTATG-CATGGATCTCTTATGAGAGCTTGGATATAGAATCTC---- 332
consensus_12966#1      AATCGCATTGAAATTCTTGGCCCGTATATATTCTAACAGAAAACGTTTTCTCCCTCAGTC 600
consensus_12966#2      ATTTGACGCTA---TGTCGGCTGGTATAGCTGCTAATGTTGTTGAGTTAATTTTTCTGCA 456
                         * *     *   *   * *  * **   *  * *           *      **    

consensus_12966#0      TGATTTCCAGTGTTAAATCTGGGATTCCACTGGCCAATAGAGGAACTGCTTCCATCGTTT 540
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      TTTGTGATGCATTGAATTGAACAGGAACTGAGAAGTAATCCAGGTTGTAGCTTCTTCAGG 660
consensus_12966#2      CAAAAAAAAA-------------------------------------------------- 466
                                                                                   

consensus_12966#0      CGTCATCTCTAATCTACAGAGGCACTTATCACCATCCCCTGCTACTGCTCTCTTATTAAG 600
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      CCACCTTTCAATAACTGAACGGGAAATAGAGCTGAGAAGGTCATCAAATTTTTCTTTATA 720
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      CAACTTAGTTTTACTCTTCCTCTAATTATCTTAGATTGATTATTTGGTACAAACTTTCAG 660
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      TTTGGCATTATCATGGATCAATACTCAAAAAGGGAGAGCATATTTCACTTACTTTCCATT 780
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      ACTGCATAATCGTGTCCATTTTATCCAGGCTGCTATGATTTCCAACCGGTTTAGAACATT 720
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      GTTCCCATAAAGG----------------------------------------------- 793
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      CCAGAATTACCTAATTTTACTCTTAAGCGATAAAAAAGAGAATGCTCAGTGTTAACAAAA 780
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      AAAAGGATTGTAAAGCAGTTTCAATAGATCGAACTTACAATTTTTCATCCAACATTTGTA 840
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      AGTTTGTTGTACGTAGTACCATAATAATTGAGGTTATACAGATATACTGAATGTGTAGAG 900
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      CCAGTTGCATTATATAGAATTTTCTTCCTCTCAATAGTCATATCTTTAGATAGGATTCTT 960
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      CTGAACAAAGAAAGGTGTAGTTCATAATGTGATCTAGATTCTATTAAGAAATAATTAATC 1020
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      ATGTTGAATTCAAGTTGTGGCATGTTAATTGCTTCTGCATGTTTTCACTAGCTATAGTAT 1080
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      ATCACAGGGTTTACTGCTTCTTATAAAAGGATGATGAAGACACTGAACAAAATGGAGTTT 1140
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      GAAGTGAAGGATTCAGTGGTCTGGCAAAAGTATTTCACGGCTACAACAAATAGCATAGTA 1200
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      CTGAAAGGTGAACTATGCATATGGGGCTTAAAGAAAGATATTATGATTCTCTTAATACCA 1260
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      TTGGATGACCTTTCTTTGGTCATCCCGTCAAAAGATGGATTCAGAGCAGTGAGAGAATTT 1320
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      TCTGTAGCTAGAGATGCTAATATTAACTTGAGCAGTCTGGCAAACGCTTTCCTAATTTCC 1380
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      CGCCAACAGATTTTGTGCACTCTTGGCTAAATCGCATTGAAATTCTTGGCCCGTATATAT 1440
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      TCTAACAGAAAACGTTTTCTCCCTCAGTCTTTGTGATGCATTGAATTGAACAGGAACTGA 1500
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      GAAGTAATCCAGGTTGTAGCTTCTTCAGGCCACCTTTCAATAACTGAACTTGAAATAGAG 1560
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      CTGAGAAGGTCATCAAATTTTTCTTTATATTTGGCATTATCATGGATCAATACTCAAAGG 1620
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      GAGAGAGCATATTTCACTTACTTTCCATTGTTAACTCCTTTTCCGCTCCATCGAACAAAT 1680
consensus_12966#3      ------------------------------------------------------------
consensus_12966#1      ------------------------------------------------------------
consensus_12966#2      ------------------------------------------------------------
                                                                                   

consensus_12966#0      ATTGTTGTTATTTCAGTGTCTTTCCAATCCAAATTATTCTCTCCACACACGTTA 1734
consensus_12966#3      ------------------------------------------------------
consensus_12966#1      ------------------------------------------------------
consensus_12966#2      ------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)