These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1318 fasta sequence [TTGAATGCTCTTTTGGGTGGATTGAGTGTGTTGGGATTGCTGATAGGTCTGCATATGATCTGCGTGCTCACTCGGATAAAAGTGGTGTTGCACTTGAAGCACATGAAAAGTTTGCAGAGCCTAGAGAAGTGGAGAAGTTAGTTATAACCCCGTCAAAGAAGGAACTAGGTCTTGCGTTCAAAGGGAATCAAAGGATGGTTCTTGAAGCATTGGAGGCAATGAGCGAGACTGAAGCTTTGAATATGAAATCAGCTTTAGAATCCAAAGGGGAGGTTGAATTTAAGGTGTGTACACTTGGGAAAGATGTCACCATAAAGAAAAGCATGGTTTCAATTAACATGGAGAAGAAAAAGGAACATCAAAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG-CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG-CCATCCTGCTTTT-CTGATACATGTTTTAACAGAATGCTAATGCAG-CATTGAGCATTGTTCTGTAATCT-CGATGATTTCTCTACATATTTACAGATGA-TTTTCT-CCTGTTTACTG-TTGATATTTGGCGT-GGTCTA-CCACATAGTT-CCCTGTACTTGGTTTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGAGTATCAGTCTTTACATTGTCATATTGTTGATTCTCTGCGAAAAATACTAGAGCTATTCATGTCGGTTTTATGTACACAACTACTTCATGAGTTCCAAAATATAAGGTGTCAATATTTTTAGGAAAAAACAATATTTGTAACCTTTGACTGATATAATTGAATTAAGTGTATATATGTT] [+] EMBL AK061199 [TTGAATGCTCTTTTGGGTGGATTGAGTGTGTTGGGATTGCTGATAGGTCTGCATATGATCTGCGTGCTCACTCGGATAAAAGTGGTGTTGCACTTGAAGCACATGAAAAGTTTGCAGAGCCTAGAGAAGTGGAGAAGTTAGTTATAACCCCGTCAAAGAAGGAACTAGGTCTTGCGTTCAAAGGGAATCAAAGGATGGTTCTTGAAGCATTGGAGGCAATGAGCGAGACTGAAGCTTTGAATATGAAATCAGCTTTAGAATCCAAAGGGGAGGTTGAATTTAAGGTGTGTACACTTGGGAAAGATGTCACCATAAAGAAAAGCATGGTTTCAATTAACATGGAGAAGAAAAAGGAACATCAAAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCT ] [-] EMBL CB629781 [ ATGGAGAAGAAAAAGGAACATCAAAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTTGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG TTGATATTTGGCGT GGTCTA CCACATAGTT CCCTGTACTTGGTTTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGAGTATCAGTCTT ] [-] EMBL CB644405 [ AAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTTGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG TTGATATTGGGCGT GGTCTA CCACATA ] [-] EMBL CB654281 [ AGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG TTGATATTTGGCGT GGTCTA CCACATAGTT CCCTGTACTTGGTTTTGCACATGAATGTTTGTACCGTGTCCTTTTAGGGTTGAAGGTCATTCTAGAG ] [-] EMBL CB622721 [ AGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTTGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG AAGGTATTTGGCGT GGTCTA CCACATAGTT CCCTGTAtaaa ] [+] EMBL AK059136 [ ATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTT ] [-] EMBL CB638228 [ AGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG TTGATATTTGGCGT GGTCTA CCACATAGTT CCCTGTACTTGGTTTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGAGTATCAGTCTTTACATTGTCATATTGTTGATTCTCTGCGAAAAATACTAGAGCTATTCATGTCGGTTTTATGTACACAACTACTTCATGAGTTCCAAAATATAAGGTGTCAATATTTTTAGGAAAAAACAATATTTGTAACCTTTGACTGATATAATTGAATTAAGTGTATATATGTT] [+] EMBL AU173071 [ CAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTNAANAGGAGGAAGCATCAGAAACCTNAAGGGGGCAAGCAGTGCAGTGCAAGCCCAAAACCTCTGGCTGGAATTGAGATGGTTGTTGCCCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAGCCATTGAGCATTGTTCTGTAATCTCCGATGATTTCTCTACATATTTACAGATGATTTTTCTCCCTGTTTACTGTTTGATATTTGGCGTGGGTCTACCCACATAGTTCCCCTGTACTTGG TTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGAGTATCAGTCTTTACATTGTCAaaaaaa ] [-] EMBL CB637576 [ AAGGAAGCGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAAATGAGATGGTTGTTG CCATCCTGCTTTTCCTGACACATGTTTTAACAGAATGCTAAAAAAA CAATAAGCATTGTTCTGT ] consensusID : consensus_12971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 446 fasta sequence [ATATACAGGTANACAATCGGTAACCGTTATGCAAGGNCCGATGAAATCGTTGNCCCCCTGGCAATCACGGTTGACAACA-CCACGAGTGTGACTGNCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAANCAGTGCAGTGCAAGCCAAAACCTCTGGCTGGAATTGAGATGGTTGTTGCCATCCTGCTTTTCTGATACATGTTTTAACAGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTACAGATGATTTTCTCCTGTTTACTGTTAAAAAAAAAAAAAA] [+] EMBL AU033135 [ATATACAGGTANACAATCGGTAACCGTTATGCAAGGNCCGATGAAATCGTTGNCCCCCTGGCAATCACGGTTGACAACA CCACGAGTGTGACTGNCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAANCAGTGCAGTGCAAGCCAAAACCTCTGGCTGGAATTGAGATGGTTGTTGCCATCCTGCTTTTCTGATACATGTTTTAACAGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTACAGATGATTTTCTCCTGTTTACTGTTAAAAAAAAAAAAA ] [+] EMBL AU097188 [ CAACACCCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAANCAGTGCAGTGCAAGCCAAAACCTCTGGCTGGAATTGAGATGGTTGTTGCCANCCTGCTTTTCTGATACATGTTTTAACAGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTACAGATGATTTTCTCCTGTTTACTGTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12971#0 TTGAATGCTCTTTTGGGTGGATTGAGTGTGTTGGGATTGCTGATAGGTCTGCATATGATC 60 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 TGCGTGCTCACTCGGATAAAAGTGGTGTTGCACTTGAAGCACATGAAAAGTTTGCAGAGC 120 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 CTAGAGAAGTGGAGAAGTTAGTTATAACCCCGTCAAAGAAGGAACTAGGTCTTGCGTTCA 180 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 AAGGGAATCAAAGGATGGTTCTTGAAGCATTGGAGGCAATGAGCGAGACTGAAGCTTTGA 240 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 ATATGAAATCAGCTTTAGAATCCAAAGGGGAGGTTGAATTTAAGGTGTGTACACTTGGGA 300 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 AAGATGTCACCATAAAGAAAAGCATGGTTTCAATTAACATGGAGAAGAAAAAGGAACATC 360 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 AAAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACT 420 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 GTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATG 480 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 TATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGA 540 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 TCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTT 600 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 CTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAA 660 consensus_12971#1 ------------ATAT-ACAGGTAN-ACAATCGGTAACCGTTATGCAAGGNCCGATGAAA 46 **** ******* *********** ************ ********* consensus_12971#0 TCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGG 720 consensus_12971#1 TCGTTGNCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGNCCGTGACCGGG 106 *** ** ***************************************** *********** consensus_12971#0 ACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGA 780 consensus_12971#1 ACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGA 166 ************************************************************ consensus_12971#0 CGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGG 840 consensus_12971#1 CGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGG 226 ************************************************************ consensus_12971#0 CCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAGCCAA 900 consensus_12971#1 CCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAANCAGTGCAGTGCAAGCCAA 286 ***************************************** ****************** consensus_12971#0 AACCTCTGGCTGGAATTGAGATGGTTGTTGCCATCCTGCTTTTCTGATACATGTTTTAAC 960 consensus_12971#1 AACCTCTGGCTGGAATTGAGATGGTTGTTGCCATCCTGCTTTTCTGATACATGTTTTAAC 346 ************************************************************ consensus_12971#0 AGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTA 1020 consensus_12971#1 AGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTA 406 ************************************************************ consensus_12971#0 CAGATGATTTTCTCCTGTTTACTGTTGATATTTGGCGTGGTCTACCACATAGTTCCCTGT 1080 consensus_12971#1 CAGATGATTTTCTCCTGTTTACTGTTAAAAAAAAAAAAAA-------------------- 446 ************************** * * consensus_12971#0 ACTTGGTTTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGA 1140 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 GTATCAGTCTTTACATTGTCATATTGTTGATTCTCTGCGAAAAATACTAGAGCTATTCAT 1200 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 GTCGGTTTTATGTACACAACTACTTCATGAGTTCCAAAATATAAGGTGTCAATATTTTTA 1260 consensus_12971#1 ------------------------------------------------------------ consensus_12971#0 GGAAAAAACAATATTTGTAACCTTTGACTGATATAATTGAATTAAGTGTATATATGTT 1318 consensus_12971#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||