These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 672 fasta sequence [CCCTTTCTCCCCCAAATCGGCGGCGACCTCTCTCCGATCTCCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA-CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC-AGCAGGAGCTGGCC-TCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACC-TC-GAACCCTAGAATACTGCATCTG--TTTT-ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCCNTTAGTTGTGCTGCTCTGAGAGTTTTCGTGAAAAA] [+] EMBL CF339917 [CCCTTTCTCCCCCAAATCGGCGGCGACCTCTCTCCGATCTCCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGTCCAAGGGCTACC ] [+] EMBL AK108131 [ CCTTTCTCCCCCAAATCGGCGGCGACCTCTCTCCGATCTCCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCCTTTAGTTGTGCTGCTCTGAG ] [+] EMBL OSC820 [ GCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGNCGCCGCCGCCGGGGGNGGAGTCGCGGAAGTNGGAGGACTNGGAGTTGCCCTGCTACGTCAACTCGTTCCTCACCGTCGTCATCCT ] [+] EMBL OSC829 [ GCGCGCACCAACCGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCG GGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGACGCCGCCGGGNGGNGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCANCGTCGTCATCCTCGGCGTCGGGCTCAACGGCAAGCCCGACCTTA ACCTCGAGACCTNGGCGCACCAGAAGGCGTTTGAGCGCTTNCAGCAAGCAGGAACTNGCCTTCCGGGGggagg ] [+] EMBL OSC21201 [ GGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGC GGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCG CTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGNTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGT ] [+] EMBL OSR2327A [ ngngnCGGTGGACGACCNCATGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGG GNNGGAGTCGCGGAAGTGGGAGGACTGGNAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA CCCTCGANACCTGGGCGCACCANAAGGCGCTCGAGCGCTNCCAGC AGCAGGAGCTGGCC TCCGGGGAGG CCAGGCCGAGTNATCTNCGCGCCTCAGGTCACCTTCNGAACCCTAGANTACTGCATCTGGTTTTTAACTCCCAAT ] [+] EMBL AU184485 [ CAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCA CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATNTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCCNTTAGTTGTGCTGCTCTGAGAGTTTTCGTGAAAAA] [+] EMBL AU173349 [ CCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGNTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATNTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTNAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCCNTTAGTTGTGCTGCTCTGAGAGTTTTCGTGAAAAA] [+] EMBL AU184824 [ GGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACTTCA CCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGC AGCAGGAGCTGGCC TCCGGGGAGGCCCAGGCCGAGTGATNTGCGCGCCTCAGGTCACC TC GAACCCTAGAATACTGCATCTG TTTT ACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAATGCTTTGTAATTCTATTATTTTCTCTTCaaaaaaaa ] consensusID : consensus_12981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [GATCTCCACCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCGGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGACATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGCCTCCGGAGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGCGCTCTTGTTTCTGGGTTTGCTCTGATACCTCCAGGAATTTGGCCACCGACCGGCGAGTGCCCCTGAACATTTTTGAACGCTGTGGGAAGTGTATTAGGTTTCTCTGTGGAGGACGAGCAGAAGGGCCCGCTAGGGCC] [+] EMBL CA757061 [GATCTCCACCACCACCACCACCACCACGCGGGCGCGCGCACCAACCGGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCGGCGGGGGGGATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGAGGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGACATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGCCTCCGGAGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGCGCTCTTGTTTCTGGGTTTGCTCTGATACCTCCAGGAATTTGGCCACCGACCGGCGAGTGCCCCTGAACATTTTTGAACGCTGTGGGAAGTGTATTAGGTTTCTCTGTGGAGGACGAGCAGAAGGGCCCGCTAGGGCC] consensusID : consensus_12981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 516 fasta sequence [CATGTTTAAAGAGGAGGATTCAGGATAAAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCC-TCCAGCAGCAGGAGCTGGCCTCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAAT-CCTCGTGAATTCTATTATTTTCTCTTCCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF326741 [CATGTTTAAAGAGGAGGATTCAGGATAAAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCC TCCAGCAGCAGGAGCTGGCCTCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAAT CCTCGTG ] [+] EMBL AU031155 [ ccgCCGACCTCACCCTCGAGNCCTGGGCGCACCAGNAAGCGCTCGNGCGCCTTCCAGCAGCAGGNGCTGGCCTCCGGGGNGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCNCCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGNTGAACNCTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGNTGGCGAATGCCCTGAACATTTTGAAATGCTTTGT AATTCTATTATTTTCTCTTCCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12981#0 CCCTTTCTCCCCCAAATCGGCGGCGACCTCTCTCCGATCTCCACCACCACCACCACCACG 60 consensus_12981#1 ----------------------------GATCTCCA----CCACCACCACCACCACCACG 28 consensus_12981#2 ------------------------------------------------------------ consensus_12981#0 CGGGCGCGCGCACCAACCGGGGGGG-CTTCGATGCGGGCGATCTCGTCGGCAGCGGGGGG 119 consensus_12981#1 CGGGCGCGCGCACCAACCGGGGGGGGCTTCGATGCGGGCGATCTCGTCGGCGGCGGGGGG 88 consensus_12981#2 ------------------------------------------------------------ consensus_12981#0 GATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGA 179 consensus_12981#1 GATGCTGCGGGCGCGGCTGCGCGGCGGGGCGCGCGTCCGCGGCGGCGGCGGGCACGGGGA 148 consensus_12981#2 ------------------------------------------------------------ consensus_12981#0 GGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAA 239 consensus_12981#1 GGGGGGCGGGCGGTGGACGACCCCGGGGCACGAGGAGCAGCCCAAGGGCTACCTATTCAA 208 consensus_12981#2 --CATGTTTAAAGAGGAGGATTCAGGATAA--AGGAGCAGCCCAAGGGCTACCTATTCAA 56 * * *** ** * ** * **************************** consensus_12981#0 CCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTA 299 consensus_12981#1 CCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTA 268 consensus_12981#2 CCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTTGCCCTGCTA 116 ************************************************************ consensus_12981#0 CGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCT 359 consensus_12981#1 CGTCACCTCGTTCCTCACCGTCGACATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCT 328 consensus_12981#2 CGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCT 176 *********************** ************************************ consensus_12981#0 CACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGC 419 consensus_12981#1 CACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGC 388 consensus_12981#2 CACCCTCGAGACCTGGGCGCACCAGAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTGGC 236 ************************************************************ consensus_12981#0 CTCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATA 479 consensus_12981#1 CTCCGGAGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATA 448 consensus_12981#2 CTCCGGGGAGGCCCAGGCCGAGTGATCTGCGCGCCTCAGGTCACCTCGAACCCTAGAATA 296 ****** ***************************************************** consensus_12981#0 CTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTT 539 consensus_12981#1 CTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGCGCTCTT 508 consensus_12981#2 CTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACACTGTGCTCTT 356 ***************************************************** ****** consensus_12981#0 GTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGAT-GGCGAATGCCC-TGA 597 consensus_12981#1 GTTTCTGGGTTTGCTCTGATACCTCCAGGAATTTGGCCACCGACCGGCGAGTGCCCCTGA 568 consensus_12981#2 GTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGAT-GGCGAATGCCC-TGA 414 ******* **** **** * **** ******** *** ** ***** ***** *** consensus_12981#0 ACATTTTGAAATGCTTTGT-AATTCTATTATTTTCTCTTCCNTTAGTTGTGCTGCTCTGA 656 consensus_12981#1 ACATTTTTGAACGCTGTGGGAAGTGTATTAGGTTTCTCTGTGGAGGACGAGCAG----AA 624 consensus_12981#2 ACATTTTGAAATCCT-CGTGAATTCTATTATTTTCTCTTCCTTTNAAAAAAAAAAAAAAA 473 ******* ** ** * ** * ***** ** * * consensus_12981#0 GAGTTTTCGTGAAAAA--------------------------- 672 consensus_12981#1 GGGCCCGCTAGGGCC---------------------------- 639 consensus_12981#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 516 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||